Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_00514 and BL01695

See Amino acid alignment / Visit BSNT_00514 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:08
# Commandline: needle
#    -asequence dna-align/BSNT_00514___yceD.1.5803.seq
#    -bsequence dna-align/BL01695___yceD.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00514___yceD-BL01695___yceD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00514___yceD-BL01695___yceD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00514___yceD
# 2: BL01695___yceD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 584
# Identity:     431/584 (73.8%)
# Similarity:   431/584 (73.8%)
# Gaps:           4/584 ( 0.7%)
# Score: 1519.0
# 
#
#=======================================

BSNT_00514___      1 ATGACAATTTCATTGGCAAAAGGACAAAAAGTAGATTTAACAAAAACAAA     50
                     |||.||||||||||.|||||||||||||||.|.|||||||||||||||||
BL01695___yce      1 ATGGCAATTTCATTAGCAAAAGGACAAAAAATCGATTTAACAAAAACAAA     50

BSNT_00514___     51 TCCGGGTCTTTCAAAGGTTGTTGTCGGTTTAGGCTGGGAT-ACGAACAAG     99
                     |||.||..|.||.||.|||||.|||||..|.||||||||| .|.|.||| 
BL01695___yce     51 TCCCGGATTGTCGAAAGTTGTCGTCGGCCTTGGCTGGGATGTCAATCAA-     99

BSNT_00514___    100 TATGACGGCGGACACGACTTTGATCTTGACTCAAGTGTGTTTTTGTTAGA    149
                     |||||||||||....||.|||||.||.||..|.||.|||||..||.|..|
BL01695___yce    100 TATGACGGCGGTGCTGATTTTGACCTGGATGCTAGCGTGTTCCTGCTCAA    149

BSNT_00514___    150 CGCCGCAGGCAAATGCGCGTCACCAAACGACTTTATTTTCTACAACCAGC    199
                     |||.|.||||||.|||.|.||...|||.||||||||||||||.||.|||.
BL01695___yce    150 CGCAGAAGGCAAGTGCTCTTCTGAAAAGGACTTTATTTTCTATAATCAGA    199

BSNT_00514___    200 TTGAAGGCGGCA-ACGGTTCAGTCGTTCATTCAGGCGACAACCTGACTGG    248
                     ..||.||| ||| .|||..|.|||.|.|||.||||||||||.|.|||.||
BL01695___yce    200 CCGAGGGC-GCAGGCGGAGCTGTCATACATACAGGCGACAATCGGACAGG    248

BSNT_00514___    249 TGCTGGCGAAGGCGACGATGAGAATGTAAAAGTAAATCTCAGCGCTGTAC    298
                     .|..||||||||.|||||||||.|.||||||.|.|||.|.|..||.||.|
BL01695___yce    249 GGAAGGCGAAGGAGACGATGAGCAGGTAAAAATCAATTTGAATGCAGTGC    298

BSNT_00514___    299 CGGCAAACATTGATAAAATCTCATTTGTTATTACCATTCACGATGCAGAA    348
                     ||||..|.|||.|.||.||.||.|||||.|||||.|||||.||.||.||.
BL01695___yce    299 CGGCCGATATTCAAAAGATTTCTTTTGTGATTACGATTCATGAAGCGGAG    348

BSNT_00514___    349 GCGCGCAGCCAAAACTTTGGACAAGTATCAAACGCGTTTGTCCGCATTGT    398
                     ||.|||.|||||||.||.|||||.||.|||||.||.|..||.|||.|..|
BL01695___yce    349 GCTCGCCGCCAAAATTTCGGACAGGTGTCAAATGCTTACGTTCGCGTGAT    398

BSNT_00514___    399 AAATGAAGAAACAAATGAAGAGCTCATCCGTTACGATCTTGCAGAAGATT    448
                     .||||||||..|.||.||||||.|.|||||.||.|||||.|..|||||||
BL01695___yce    399 CAATGAAGACTCGAACGAAGAGTTAATCCGCTATGATCTGGGTGAAGATT    448

BSNT_00514___    449 TCTCTATTGAAACGGCAATCATTGCAGGGGAGCTTTACAGACATAACGGC    498
                     ||||.||||||||.||..|.||..|.||.|||||.|||.|.||....||.
BL01695___yce    449 TCTCGATTGAAACAGCGCTGATCACGGGAGAGCTGTACCGCCACGGAGGG    498

BSNT_00514___    499 GAGTGGAAATTCTCCGCAATCGGCTCAGGCTACCAAGGCGGCCTTGCCCG    548
                     ||.|||||.|||||.||.||||||||||||||.||||||||.||.||..|
BL01695___yce    499 GAATGGAAGTTCTCAGCGATCGGCTCAGGCTATCAAGGCGGGCTGGCGAG    548

BSNT_00514___    549 CATTGCAACAGACTACGGTTTGCAAGTCGGTTAA    582
                     .||.||.||.||.|.|||..||||.|||||.|.|
BL01695___yce    549 GATCGCCACCGATTTCGGCCTGCAGGTCGGCTGA    582


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.