Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00516 and BL01697

See Amino acid alignment / Visit BSNT_00516 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:08
# Commandline: needle
#    -asequence dna-align/BSNT_00516___yceF.1.5803.seq
#    -bsequence dna-align/BL01697___yceF.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00516___yceF-BL01697___yceF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00516___yceF-BL01697___yceF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00516___yceF
# 2: BL01697___yceF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 781
# Identity:     607/781 (77.7%)
# Similarity:   607/781 (77.7%)
# Gaps:          14/781 ( 1.8%)
# Score: 2312.0
# 
#
#=======================================

BSNT_00516___      1 TTGGACTTTTTACATCATATTTTGTCTACGTATGCTTCATTTTTCGATTG     50
                     .||||.||.||.|||||||||.||||.|..||.||.||||||||||||||
BL01697___yce      1 GTGGATTTATTTCATCATATTATGTCAATTTACGCCTCATTTTTCGATTG     50

BSNT_00516___     51 GAAAATGTGGGGGGAAGTTCTGACGGATCCTGTTTCCTGGGGTTTGATCG    100
                     |.|||||||||.||||||..|.|||||.||||||||||||||..||||||
BL01697___yce     51 GGAAATGTGGGTGGAAGTATTAACGGACCCTGTTTCCTGGGGGCTGATCG    100

BSNT_00516___    101 GTTCCCTTGTTGTTCTGGAAGGCCTTTTATCGGCCGATAACGCGCTTGTT    150
                     |.||.||.||.||.|||||.||.||||||||.||.||||||||.||.|||
BL01697___yce    101 GCTCGCTGGTCGTGCTGGAGGGGCTTTTATCTGCGGATAACGCCCTCGTT    150

BSNT_00516___    151 CTTGCGGTCATGGTTAAACACCTGCCGGAAAAACAGCGGAAAAAAGCGTT    200
                     ||.||.||||||||.||.|||||.|||||||||||.||.|||||||||||
BL01697___yce    151 CTCGCCGTCATGGTGAAGCACCTTCCGGAAAAACAACGCAAAAAAGCGTT    200

BSNT_00516___    201 AACGTATGGTTTGTTTGGAGCTTATATTTTCAGGTTTATTTTTATCGGGC    250
                     .||.||.|||||..|.||.||.||..|.||.||.|||.|.||.||.||.|
BL01697___yce    201 GACATACGGTTTAATCGGGGCCTACTTCTTTAGATTTCTATTCATTGGAC    250

BSNT_00516___    251 TCGGTATGCTTCTCATTAAATTCTGGTGGATCAAGGTGCTTGGCG-CGCT    299
                     ||||||||.|.||.||||||||||||||||||||..||||.||.| ||| 
BL01697___yce    251 TCGGTATGATCCTGATTAAATTCTGGTGGATCAAACTGCTCGGAGCCGC-    299

BSNT_00516___    300 TTACCTGGCTTGGCTCGTCATTAAGCACTTCTGGATAGGCGAAAAAGAAG    349
                     .||.|||||.|||||||||||.||||||||||..||.||.||....||.|
BL01697___yce    300 ATATCTGGCATGGCTCGTCATCAAGCACTTCTTCATCGGTGAGGGCGATG    349

BSNT_00516___    350 AGGAAGCGGACGGCATCAAGAAAAACTCTTGGATGGTCCGCACGTTCGGG    399
                     |.|||||..|||.||||||.|||.||...||||||||.|||...||||||
BL01697___yce    350 ATGAAGCAAACGCCATCAAAAAAGACAGCTGGATGGTACGCGTTTTCGGG    399

BSNT_00516___    400 ATCTTCTGGGCGACTGTCATTTCAGTAGAATTAATGGATCTTGCCTTCTC    449
                     .||||||||||||||||||||||.|||||..|.|||||.|||||.||.||
BL01697___yce    400 GTCTTCTGGGCGACTGTCATTTCGGTAGAGCTCATGGACCTTGCATTTTC    449

BSNT_00516___    450 TGTGGACAGCATCCTGGCCGCGTTTGCAGTATCTGAAAAAGTATGGGTGC    499
                     .||.||||||||||||||.||.|||||.|||||||||||.||||||||||
BL01697___yce    450 GGTCGACAGCATCCTGGCGGCATTTGCCGTATCTGAAAAGGTATGGGTGC    499

BSNT_00516___    500 TTCTGATCGGCGGTATGCTTGGTATTTTAATGATGCGTACAGTGGCAAAA    549
                     |||||||||||||.|||||.||.||.||.||||||.|.||.||.||.|||
BL01697___yce    500 TTCTGATCGGCGGCATGCTCGGCATCTTGATGATGAGAACCGTTGCGAAA    549

BSNT_00516___    550 GTGTTCCTTG-TGCTGATTGATAAAATTCCTGAGCTGGAAAACACAGCAT    598
                     .|.|| |||| .|||||||||.|||.|.|||||.||.||||..||.||.|
BL01697___yce    550 TTCTT-CTTGACGCTGATTGACAAAGTGCCTGAACTTGAAACAACGGCCT    598

BSNT_00516___    599 TCGTGTTAATCGGCATTATCGCGCTGAAAATGGCGGGGAGCGCTTTCCAT    648
                     |.||.||||||||.||.|||||.|||||||||||.|.|||.|..|..|||
BL01697___yce    599 TTGTTTTAATCGGAATCATCGCACTGAAAATGGCTGCGAGTGTATGGCAT    648

BSNT_00516___    649 TACGAAATGCCGCACTCTGTATTCTTCATCA---TCATTATCGCTGCATT    695
                     ...||||||||||||...||.|||||.||||   |.|||||   |||.||
BL01697___yce    649 ATTGAAATGCCGCACAGCGTCTTCTTTATCATTCTGATTAT---TGCTTT    695

BSNT_00516___    696 TGCGGTAACATTGATCATTCACTACATCAATAAACAAAAGCAG--GTGCG    743
                     |||.|.||||||.|||||||||||.||.||.||.|||||  ||  ||...
BL01697___yce    696 TGCCGCAACATTTATCATTCACTATATGAACAAGCAAAA--AGCTGTAAA    743

BSNT_00516___    744 CGAACAAACAGCCGCTTCAAAAGAAGAATAA    774
                     .||.|||||.||.||||||||.|||||||||
BL01697___yce    744 AGAGCAAACGGCGGCTTCAAAGGAAGAATAA    774


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_00516 and BL01697

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
