Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00605 and BL01717

See Amino acid alignment / Visit BSNT_00605 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:14
# Commandline: needle
#    -asequence dna-align/BSNT_00605.1.5803.seq
#    -bsequence dna-align/BL01717.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00605-BL01717.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00605-BL01717.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00605
# 2: BL01717
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 777
# Identity:     421/777 (54.2%)
# Similarity:   421/777 (54.2%)
# Gaps:         207/777 (26.6%)
# Score: 1318.5
# 
#
#=======================================

BSNT_00605         1 ATGTTTTTAAAAAAGGTTACTCTTCTTCGAGATAAGATTTTGGACTT-TG     49
                     |||||||||||||||.|.|||.|.|||||.|| |.||.||....||| ||
BL01717            1 ATGTTTTTAAAAAAGCTGACTTTACTTCGGGA-AGGAGTTCCTTCTTATG     49

BSNT_00605        50 ACAGATTTCCTTTTACTATCCCGGCTATAAGTCAA---TTAAA-----TG     91
                     ..|.||.|||.|||.|.||.||.|||||   ||||   |||||     ||
BL01717           50 CAAAATATCCATTTTCAATTCCTGCTAT---TCAACATTTAAAAGAACTG     96

BSNT_00605        92 ACATCTTATTTACTAGCCAA------GTGACTTTTTTTGTGGGGGAAAAT    135
                     ||.|.|           |||      ||.||.||||||||.||||||||.
BL01717           97 ACGTTT-----------CAAAAAAACGTAACATTTTTTGTCGGGGAAAAC    135

BSNT_00605       136 GGATCTGGAAAATCTACTTTGCTTGAAGCGATAGCAGATAAGTGTGAATT    185
                     |||||.||.|||||.||..||||||||||.||.||||||||.||.|||||
BL01717          136 GGATCGGGCAAATCGACGCTGCTTGAAGCAATCGCAGATAAATGCGAATT    185

BSNT_00605       186 CAATACAGCGGGCGGAAGCCGAAATAATGTCTATGAA--TTACGGGAGTC    233
                     .||.|||||.|||||..|..|||||||....||||||  .|||||  .||
BL01717          186 TAACACAGCCGGCGGGGGAAGAAATAACACATATGAAGTGTACGG--CTC    233

BSNT_00605       234 AGATTCCCATTTAGGAGATTATATACGTTTATCTTGGCTTCCAAAGGTAA    283
                     .|..||...|.|.|||||.|||||..|.||.||.||||||||.||.||||
BL01717          234 CGGATCGGCTCTTGGAGACTATATCAGATTGTCGTGGCTTCCCAAAGTAA    283

BSNT_00605       284 CAAATGGCTTCTTCTTAAGGGCTGAATCGTTTTATCATCTTTCTCTTCAT    333
                     ||||.|||||.||..|..|.||||||||.||.||||||.||.|...||||
BL01717          284 CAAACGGCTTTTTTCTGCGCGCTGAATCTTTCTATCATTTTGCCACTCAT    333

BSNT_00605       334 CTGGATGAGATGGA----ACTAGATGCTCCTCAGCCATACCGTTC----C    375
                     .|.|||||..||||    ||..|||                 |||    |
BL01717          334 ATTGATGAAGTGGATATCACGGGAT-----------------TTCGAAGC    366

BSNT_00605       376 TATGGAGGGAGGCCGCTACACAATCAATCACATGGAGAGTCCTTTATGTC    425
                     ||.|||||.||..|.||.|||.|.||.||.||.||.||.||.|||.|.||
BL01717          367 TACGGAGGCAGATCTCTTCACGAGCAGTCGCACGGCGAATCTTTTTTATC    416

BSNT_00605       426 TCTATTCCGTCATCGTTTTAAAGAGAAAGCGATTTACCTTTTAGATGAGC    475
                     .||.|||...||||||||||||||.||.|.||||||.|||.|||||||||
BL01717          417 GCTTTTCAAGCATCGTTTTAAAGAAAAGGGGATTTATCTTCTAGATGAGC    466

BSNT_00605       476 CAGAAGCAGCACTT-TCTCCAGCTAGACAATTAGCTTTTTTGAGAGTTAT    524
                     |.|||||.|| ||| |||||.||.|||||..|.||.||.||||.|.|.||
BL01717          467 CTGAAGCGGC-CTTATCTCCGGCAAGACAGCTGGCATTCTTGAAAATCAT    515

BSNT_00605       525 ACATGATTTGGTGAAGGGCGGAATTGGTGAAGGGCGGAAATGTACAGATG    574
                     .||||||||       |.||.|||         .|.|..|.|..|||.|.
BL01717          516 TCATGATTT-------GACGAAAT---------CCAGCCAGGCTCAGTTT    549

BSNT_00605       575 ATCATTGCGACTCACTCCCCAATCCTACTGGGCTATCCCAATGCTAA---    621
                     |||||.||..|.||||||||.||..||.|.||.|||||..|.||..|   
BL01717          550 ATCATCGCTTCCCACTCCCCCATTTTATTAGGGTATCCGGAAGCCGAAAT    599

BSNT_00605       621 --------------------------------------------------    621
                                                                       
BL01717          600 CTTTAGTTTTGATGGTGAACAAATCGCTGAAGTGAACTATGAGGATACGG    649

BSNT_00605       621 --------------------------------------------------    621
                                                                       
BL01717          650 ATCATTACACTTTAACCAAGTATTTTCTTCAGCACCGGGAAAAGCTTTTG    699

BSNT_00605       621 ---------------------------    621
                                                
BL01717          700 GCGGAGCTGTTTTTAGATGACGTTTGA    726


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