Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00627 and BL01729

See Amino acid alignment / Visit BSNT_00627 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:15
# Commandline: needle
#    -asequence dna-align/BSNT_00627___srfAD.1.5803.seq
#    -bsequence dna-align/BL01729___lchAD.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00627___srfAD-BL01729___lchAD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00627___srfAD-BL01729___lchAD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00627___srfAD
# 2: BL01729___lchAD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 801
# Identity:     502/801 (62.7%)
# Similarity:   502/801 (62.7%)
# Gaps:         132/801 (16.5%)
# Score: 1456.0
# 
#
#=======================================

BSNT_00627___      1 ATGAGCCAACTC-TTCAAATCA-TTTGATGCGTCGGAAA---AAACGCAG     45
                     ||||.|.|..|| ||  ||.|| ||||..|||.|||.||   ..|.||||
BL01729___lch      1 ATGAACGAGATCATT--AAGCAGTTTGGAGCGCCGGCAAGCGGTATGCAG     48

BSNT_00627___     46 CTCATCTGTTTTCCGTTTGCTGGCGGCTACTCGGCGTCGTTTCGCCCTCT     95
                     .|.||||||||.||||||||.||.||.||.|||||.||.||..|.||.||
BL01729___lch     49 TTGATCTGTTTCCCGTTTGCCGGGGGATATTCGGCATCATTCAGACCGCT     98

BSNT_00627___     96 CCATGCTTTTTT----GCAGGGGGAGTGCGAGATGCTCGCTGCCGAGCCG    141
                     .||.|....|||    .||    ||.|..||.|||||.||...|||.|||
BL01729___lch     99 TCACGAACATTTAAAAACA----GATTTTGATATGCTGGCGATCGAACCG    144

BSNT_00627___    142 CCGGGACACGGCACGAATCAAACGTCAGCCATT---GAGGATCTCGAAGA    188
                     ||.|||||||||||.||||.||.|   ||..||   ||..||.|.|||.|
BL01729___lch    145 CCTGGACACGGCACAAATCGAATG---GCGCTTGTCGACAATTTGGAAAA    191

BSNT_00627___    189 GCTGACAGATTTGTACA-AGCAAGAACTGAACCTTCGCCCTGATCGGCCG    237
                     |||..|.||||||||.| ||| .|..||.||     |||    .||||  
BL01729___lch    192 GCTCGCCGATTTGTATATAGC-GGCGCTTAA-----GCC----GCGGC--    229

BSNT_00627___    238 TTT-----------GTGCTGTTCGGACACAGTATGGGCGGAATGATCACC    276
                     |||           |||||||||||.||||||||||||||.|||.|....
BL01729___lch    230 TTTCCTCTCAATTCGTGCTGTTCGGCCACAGTATGGGCGGCATGGTTGTT    279

BSNT_00627___    277 TTCAGGCTGGCGCAAAAGCTTGAGCGTGAGGGCATCTTTCC-GCAGGCG-    324
                     |.|||||||||||||||||||||.|..||.||.|||||||| ||||.|| 
BL01729___lch    280 TACAGGCTGGCGCAAAAGCTTGAACAAGAAGGGATCTTTCCGGCAGCCGC    329

BSNT_00627___    325 ---GTTATCATTTCTGCAATCCAGCCGCCTCATATTCAGCGGAAGAAAGT    371
                        |.|||||     ||.||.||||||||.||||||||||||.|.||.||
BL01729___lch    330 TGTGATATCA-----GCGATACAGCCGCCCCATATTCAGCGGCAAAAGGT    374

BSNT_00627___    372 GTCCCACCTGCCTGATGA-TCAGTTTCTCGATCATATTATCCAATTAGGC    420
                     |||.||||.....||||| .|| ||||||||.|||.|.||.||..|.|||
BL01729___lch    375 GTCTCACCAAAAGGATGACGCA-TTTCTCGACCATCTCATTCAGCTTGGC    423

BSNT_00627___    421 GGAATGCCCGCAGAGCTTGTTGAAAATAAGGAGGTCATGTCCTTTTTCCT    470
                     |||||.|||..|||.||.|..||..|.|.|||..|.|||..|||||||||
BL01729___lch    424 GGAATACCCAAAGAACTGGCAGAGCACAGGGAAATGATGAACTTTTTCCT    473

BSNT_00627___    471 GCCTTCTTTCCGATCAGATTACCGGGCTCTTGAACAATTTGAGCTTTACG    520
                     ||||||.|||.||.|.||.|||.|.||.|||||             .|||
BL01729___lch    474 GCCTTCGTTCAGAGCGGACTACAGAGCGCTTGA-------------GACG    510

BSNT_00627___    521 ATCTGGCCCA----GATC----------CAG-TCGCCTGTTCATGTCTTT    555
                     .||||  |||    ||||          .|| ||||||||.|||.|..|.
BL01729___lch    511 TTCTG--CCATACCGATCATACGCCGCTTAGATCGCCTGTGCATATTCTG    558

BSNT_00627___    556 AACGG-----GCTTGATGATAAAAAATGCATACGAGATGCGGAAGGCTGG    600
                     |||||     ||     |||.|.||||||||..|.||||||...||||||
BL01729___lch    559 AACGGAGACCGC-----GATGAGAAATGCATGAGGGATGCGCTTGGCTGG    603

BSNT_00627___    601 AAGAAGTGGGCAAAAGAC-ATCACATTCCATCAATTT-GACGGAGGACAC    648
                     ||.|||||||| .||.|| |||...||||| |.|||| .|.||.|||||.
BL01729___lch    604 AAAAAGTGGGC-GAATACGATCGATTTCCA-CTATTTCAAAGGCGGACAT    651

BSNT_00627___    649 ATGTTCCTGCTGTCACAAACGGAAGAAGTCGC----------AGAACGGA    688
                     ||||..||..|.|||.||||||||.||||.||          |.||| ||
BL01729___lch    652 ATGTATCTTTTATCAGAAACGGAACAAGTAGCCGCCAAGTTGAAAAC-GA    700

BSNT_00627___    689 TTTTTGCGATCTTGAATCAGCA----------TCCGATCATTCAACCGTG    728
                     ||...|||..|    |.|.|||          |||||..||..||     
BL01729___lch    701 TTGCCGCGGCC----AGCCGCAGTACGGCTGTTCCGACAATGTAA-----    741

BSNT_00627___    729 A    729
                      
BL01729___lch    741 -    741


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