Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00633 and BL01730
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:15
# Commandline: needle
# -asequence dna-align/BSNT_00633___ycxD.1.5803.seq
# -bsequence dna-align/BL01730___ycxD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00633___ycxD-BL01730___ycxD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00633___ycxD-BL01730___ycxD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00633___ycxD
# 2: BL01730___ycxD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1443
# Identity: 939/1443 (65.1%)
# Similarity: 939/1443 (65.1%)
# Gaps: 201/1443 (13.9%)
# Score: 2879.0
#
#
#=======================================
BSNT_00633___ 1 ATGGAGAAATATATGAGTC-TATTAATGA--GGA-TAGAGGAGATGATGC 46
|||.|.|||||| ||| .|.|.|||| |.| |.|||||.||||| |
BL01730___ycx 1 ATGCACAAATAT----GTCGCACTGATGAACGAATTGGAGGATATGAT-C 45
BSNT_00633___ 47 AAAG-CACCGCCTATCAAGAAGGAGACAGGCTTCCATCTATCCGTCAGCT 95
.||| ||...|||.|||.|||||.||||||||.||.||.|||||...|||
BL01730___ycx 46 GAAGACAAATCCTTTCAGGAAGGGGACAGGCTGCCTTCCATCCGCGCGCT 95
BSNT_00633___ 96 GTCCGCCCGCTACCAAGTCAGCAAAAGCACAGTGATCCGCGCGCTGCAGG 145
|.||...||.|.|.|.||.|||||||||||.||.|||.|.|||.||.|.|
BL01730___ycx 96 GGCCATACGTTTCAAGGTAAGCAAAAGCACGGTCATCAGGGCGTTGAACG 145
BSNT_00633___ 146 AGCTGGAAAAGCGCCACCTTATCTATTCTGTTCCGAAAAGCGGCTATTAT 195
|||||||||..||.|||||.||||||||.||.|||||||||||||||||.
BL01730___ycx 146 AGCTGGAAAGACGGCACCTCATCTATTCAGTGCCGAAAAGCGGCTATTAC 195
BSNT_00633___ 196 ATTGTGAAAAAGACAGGGAAATCAAGAAGCGGGC-----------AGCCT 234
.|.||||||||.|| .|||| |||||.| ||.||
BL01730___ycx 196 GTCGTGAAAAAAAC----GAATC----AGCGGCCCAACTCCGGAAAGGCT 237
BSNT_00633___ 235 GGCCCCATCGACTTTGCCACATCTGCGCCGGATCCAGATGTGTTTCCGTA 284
| ..|||||.||.||..||||.||.||.|||||.|||||.|||||.||
BL01730___ycx 238 G---TAATCGATTTCGCAGCATCCGCTCCTGATCCGGATGTTTTTCCATA 284
BSNT_00633___ 285 TCTTGATTTTCAGCACTGTATCAACAAAGCGATTGATACATACAAAAACG 334
..|.|||||||||||.||.|||||.|||||.||.||||||||||||||||
BL01730___ycx 285 CATCGATTTTCAGCATTGCATCAATAAAGCCATCGATACATACAAAAACG 334
BSNT_00633___ 335 ATTTGTTTATTTATGGGACGCCAAAGGGGCTTCCCTCACTCATCC---GC 381
||.|||||||||||||||||||.||.||.||.||.||..|.|||| .|
BL01730___ycx 335 ATCTGTTTATTTATGGGACGCCGAAAGGTCTGCCGTCGTTAATCCAAGCC 384
BSNT_00633___ 382 GTACTCCGAAAGCTCTTGGCCACTCAA-----CAGGTATTTGC---GGAT 423
|| ||.|||||..|| |.||| |||||.||||| .||.
BL01730___ycx 385 GT--TCAGAAAGAGCT------CGCAAACAGCCAGGTGTTTGCAAAAGAG 426
BSNT_00633___ 424 GAACGGCATATTTTCATTACATCAGGTGTCCAGCAGGCGTTATCCTTGCT 473
|||| .||||||| |||||||||||.|||||||||||..|..|||||||
BL01730___ycx 427 GAAC-ACATATTT--ATTACATCAGGCGTCCAGCAGGCCCTCGCCTTGCT 473
BSNT_00633___ 474 TTGTGCCATGCCGTTCCCAAATGGGAAAGAGAA------GATCGCCATTG 517
...|.|.|||||.||.|||||..||||...||| |||| |
BL01730___ycx 474 CGCTTCAATGCCTTTTCCAAACCGGAAGCGGAAAGTTCTGATC------G 517
BSNT_00633___ 518 AACAGCCGGGCTACCATTTGATGGTCGAACAGCTTGA----GACGCTTGG 563
||||||||.||||.|||||..||.|..||.|.||||| .|| ||
BL01730___ycx 518 AACAGCCGAGCTATCATTTATTGATTAAATACCTTGAAGTTCAC----GG 563
BSNT_00633___ 564 GATTCCCGCTATCGGGGT-GAAACGAACGGAAGAAGGGCTTGATATAGCC 612
.||.|||||..||||..| ||.| ||||.|..|||||..|.|||||.|.|
BL01730___ycx 564 CATCCCCGCGGTCGGCATCGAGA-GAACCGCCGAAGGCATCGATATGGAC 612
BSNT_00633___ 613 GAGGTTGAGCGGTTATTTCAAACAGAATCGATTAAATTTTTTTATACGAT 662
|||.|.|||||..|.||||||||.|||...||.|||||||||||||||||
BL01730___ycx 613 GAGCTGGAGCGCATCTTTCAAACCGAAGATATCAAATTTTTTTATACGAT 662
BSNT_00633___ 663 GCCGCGCTTCCATAACCCGCTTGG------CTACTCATTGTCAGAGCGTG 706
||||.|.|||||.||.|||||.|| |||| .|.||.||.|
BL01730___ycx 663 GCCGAGATTCCACAATCCGCTCGGGACATCCTAC------ACGGAACGGG 706
BSNT_00633___ 707 ATAAACAGGAGCTTGTGAGACTGGC--AGAAGCGTATGATGTCTATCTCG 754
|.|||..||...|.||.|..||||| |||| .|||||.||||||.|.|
BL01730___ycx 707 AAAAAACGGCCATCGTCAAGCTGGCGGAGAA--ATATGACGTCTATATTG 754
BSNT_00633___ 755 TTGAGGATGATTACCTCGGTGATCTGGAGGAAAATAAAAAGGCAGATCCG 804
..||||||||||...|.||.|||.|||||.|..||||||||||.||||||
BL01730___ycx 755 CCGAGGATGATTTTTTAGGAGATTTGGAGAATGATAAAAAGGCGGATCCG 804
BSNT_00633___ 805 ---CTGTACGCATATGATCTGTCCTCACATGTCATCTATTTGAAAAGCTT 851
|..||| |||||..|.||.||.||.||.||.|||||||||||.||
BL01730___ycx 805 TTACATTAC---TATGACATTTCTTCCCACGTTATTTATTTGAAAAGTTT 851
BSNT_00633___ 852 CTCGAAAATGATGTTCCCCGGCCTTCGCGTGGGGGCGGCTGTTTTGCCCG 901
|||.||.||.||.||.||.||.||.||.||.||.||.||.||..||||||
BL01730___ycx 852 CTCAAAGATTATTTTTCCGGGTCTGCGGGTCGGAGCCGCCGTGCTGCCCG 901
BSNT_00633___ 902 AAGCGCTGAC---TGACACGTTCTATGCGTACAAAAAGCTGAACGACATC 948
|..|.||||| || .||||.|...|||||||.|||||..||||||.
BL01730___ycx 902 ATTCTCTGACAATTG---TGTTCAACCGGTACAAACAGCTGCTCGACATT 948
BSNT_00633___ 949 GACTGTTCGATGATTTCTCAAGCGGCATTGGAGATTTACCTGAAAAGCGG 998
|||.||||.|||.|.|||||.||.||.||||||||.||..||||.|||||
BL01730___ycx 949 GACAGTTCCATGCTGTCTCAGGCCGCTTTGGAGATCTATTTGAAGAGCGG 998
BSNT_00633___ 999 TATGTACGGCAGGCATAAGGAGAAAATCAGAGATTCTTATAAAGAGCGGT 1048
.||||..|..|.|||||||.|.||.|||.|...|||.|||.||.|
BL01730___ycx 999 GATGTTTGAAAAGCATAAGCAAAAGATCCGTTCTTCCTATCAAAA----- 1043
BSNT_00633___ 1049 CGCTGAAGCTTCATCAAGCCATTC-------------AAACACACAG--- 1082
||| ||||.||| ||| ||| ||
BL01730___ycx 1044 -----AAG----ATCATGCC-TTCTGCATGATCTGCTAAA-----AGAAT 1078
BSNT_00633___ 1083 -----GCAGCT----GGGAAGCGGCCGCTTTACGTTCTCCAGCGGGCAGG 1123
||..|| ||||.|.|...|..||.|.|.||||.|| .
BL01730___ycx 1079 GTTCCGCGTCTCTAGGGGATGTGTTTGAATTTCATCCTCCCGC------A 1122
BSNT_00633___ 1124 CACCCTGC-ATGCACACCCACCTGGTGCTT----CCTCAGGATCTGCCCG 1168
||.||.|| ||.|||||||| |..||..| ||..|.|||| ||.|
BL01730___ycx 1123 CAGCCGGCTATCCACACCCA--TATTGAATTGGACCGGACGATC--CCGG 1168
BSNT_00633___ 1169 CCTCAAGAGTGATTCATAGACTGAAAAAACAAGGG--GTTCTCCTTGAGG 1216
|.||..|..|||||.|.||.||..|||||| ||| ||.||.||.||..
BL01730___ycx 1169 CATCCCGTCTGATTAAAAGCCTACAAAAAC--GGGACGTCCTGCTCGAAC 1216
BSNT_00633___ 1217 CGATAGACCGTCATTATTTATCAGATTAT-CAGAAAGAAAATCTATTAAA 1265
||.|..||..|||||||.|..|.|.||.| ||.|||| |||||||||.||
BL01730___ycx 1217 CGGTCAACGCTCATTATATGCCGGCTTTTCCAAAAAG-AAATCTATTGAA 1265
BSNT_00633___ 1266 AATCAATATTTCCAATGTGAAAACGGAAGA---------------TATTG 1300
||||||||..||||||||||| |||||| .||.|
BL01730___ycx 1266 AATCAATACGTCCAATGTGAA---GGAAGAGGACATCCGCAGCGGCATCG 1312
BSNT_00633___ 1301 AGC----GCGGTGTCAAGCTGTTGATGAGCC----ATTTATAA 1335
||| |||| |||||.||.|| |.|| ||||.||.
BL01730___ycx 1313 AGCGGTTGCGG---CAAGCGGTGGA--AACCGCTTATTTTTAG 1350
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