Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00308 and BL01731
See
Amino acid alignment /
Visit
BSNT_00308 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:58
# Commandline: needle
# -asequence dna-align/BSNT_00308.1.5803.seq
# -bsequence dna-align/BL01731___ybbA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00308-BL01731___ybbA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00308-BL01731___ybbA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00308
# 2: BL01731___ybbA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 939
# Identity: 448/939 (47.7%)
# Similarity: 448/939 (47.7%)
# Gaps: 339/939 (36.1%)
# Score: 854.5
#
#
#=======================================
BSNT_00308 1 TTGAAAGGATCTCTTTCAGAACA-----CAAAG---CCGGCAACAGGAGG 42
.|||.|| .|.||||| .|||| |..||..|.|||||
BL01731___ybb 1 ATGATAG--------ACGGAACATTGATAAAAGATACATGCTTCGGGAGG 42
BSNT_00308 43 ------TTCACGCTGTACCTCCCTCCTTCCTACAGCACAGACAGCGGGG- 85
|| |.|.||.||.||||||||.||| |..|||||.|
BL01731___ybb 43 GAGCTTTT---GATCTATCTTCCTCCTTCATAC------GGGAGCGGTGA 83
BSNT_00308 86 -----GATTTCCTGCTGTTTACGTGCAGGA--TGGCAG--TTCTTTGTTC 126
|.|.|||.|.|.|.|||||.||.|| |||.|| ||.||.|.||
BL01731___ybb 84 AAACCGCTATCCCGTTCTATACGTCCATGACCTGGGAGATTTATTCGATC 133
BSNT_00308 127 ----------CAAAA-------CCAAATCGAATTACTAGAAAGCGCCTTT 159
|||.| |..|||||| |||||...|||
BL01731___ybb 134 CGGCATACAGCAACAGTCTGCGCTCAATCGA--------AAAGCTGTTTT 175
BSNT_00308 160 CAA--CAGCAAAGGCTCCCTGAACTCGTGCTGATCGGTATCGAACCCGAA 207
|.| |||.|| .|.||.|||.|..|||||.||||..|.|..||..||
BL01731___ybb 176 CGAGTCAGGAA---GTGCCGGAATTGCTGCTGGTCGGAGTGGCTCCAAAA 222
BSNT_00308 208 AACCGGCTTGA---TGAATACAC-------CCCATGGCCG------GCTG 241
.||.|| || .|||||||| ||||.| || ||||
BL01731___ybb 223 GACAGG---GAAAGCGAATACACGCCTTTTCCCAAG--CGGCATTTGCTG 267
BSNT_00308 242 C---ATCACTCAGTGATCGGTTCAC-GGACTTCGGCGGAATGGGATATCA 287
| ||.| || |||.|.||||||.|.|||
BL01731___ybb 268 CCGAATAA---------------ACGGGAGTACGGCGGGAAGGG------ 296
BSNT_00308 288 CTATCTGTCTGATATAACGAACCAGTTCATTCCGCT---------AATCG 328
.|||||| .||.||||| |||||
BL01731___ybb 297 --------------CAACGAA------TATGCCGCTTTTTTGGCCAATCG 326
BSNT_00308 329 ----AAG----AAAACTGGAACGTCACCAGGGAA-----CCGCAGTC--- 362
||| |.| |.||.||.|||.|..||| ||| ||.|
BL01731___ybb 327 GCTCAAGCCTCATA--TCGACCGGCACTACCGAACAAATCCG-AGCCGTG 373
BSNT_00308 363 ----AAGAGGAATGATCGGTGCCTCATTAGGCGGCCTCATCTCAATGTTC 408
||.||||||.|||||....||.||.||.||..|.|||||..|.|.|
BL01731___ybb 374 AACAAACAGGAATCATCGGAAAGTCGTTCGGAGGGTTGATCTCGGTTTAC 423
BSNT_00308 409 ---GCCATATTAAAATATCCGTCA-ATGTTCGGGAAAATAGGCTCTATAT 454
|| |.||..|..|||.| | |..||.||.|||||.||.|||.|.|
BL01731___ybb 424 ACAGC--TTTTCTAGCATCGG--AGACCTTTGGAAAAATCGGATCTTTGT 469
BSNT_00308 455 CAGGTTCATACTGGTACGA--GAACGCAGCGGAAACC--ATTCAT----- 495
|||||||.|.|||||..|| ||| .|||| .||.||
BL01731___ybb 470 CAGGTTCTTTCTGGTTTGAAGGAA--------TAACCGAGTTTATGAAGA 511
BSNT_00308 496 ATATCTTCTTT-----AAAGCCTGGCACTGCACGTGTTTTCATGTCTATC 540
|||.|..|||| .||||.| ||| ||..|||..|||..|.||
BL01731___ybb 512 ATAACCGCTTTGAGAATAAGCAT----CTG--CGCATTTATATGGATGTC 555
BSNT_00308 541 GGGAGTGAAGAAGGCTGTGAAAAACAATCCATTCAGCGA-CATATGCTGA 589
||.||....||||| || ||..|||.|| .||.|||.||
BL01731___ybb 556 GGAAGCACGGAAGG----GA---------CAGACAGGGATAATCTGCAGA 592
BSNT_00308 590 AA------------AAAACAAAGCAAG--TTCATC----------AAAG- 614
|| |..||||||.||| ||||.| ||||
BL01731___ybb 593 AAGAGATGATACCGAGGACAAAGGAAGCCTTCAGCCTGTTAACAGAAAGC 642
BSNT_00308 615 ------TCTAAAAGAAAAAGGCTTCACTGAAGACCAGTTGTGTCTTTCAA 658
|| .||||||| .|||||| |.|||| .|
BL01731___ybb 643 GCCGCCTC----CGAAAAAG----AACTGAA----ATTTGT-------CA 673
BSNT_00308 659 TTGAAAAAG-----------------GAGCGGT----GCACCACCGCAAG 687
||||..||| ||||||| |.|.| |
BL01731___ybb 674 TTGATGAAGGTGGCTCACATCGGCTTGAGCGGTTTGCGAAGC-------G 716
BSNT_00308 688 TATTTCTGCAAACAGT---------------------TCATCAAC-GCGC 715
| ||||.|.||.|.|| ||| |||| ||||
BL01731___ybb 717 T-TTTCCGGAAGCCGTTAAATGGCTGTTTGGCTCCTGTCA-CAACAGCGC 764
BSNT_00308 716 TC-GAATGGCTATACGGAAAAAACCGCTCAACCCTATGA 753
.| ||||||| .||| |.| |.|||
BL01731___ybb 765 ACGGAATGGC----AGGA-------GTT------TCTGA 786
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.