Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00661 and BL01752

See Amino acid alignment / Visit BSNT_00661 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:17
# Commandline: needle
#    -asequence dna-align/BSNT_00661___gerKC.1.5803.seq
#    -bsequence dna-align/BL01752___gerKC.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00661___gerKC-BL01752___gerKC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00661___gerKC-BL01752___gerKC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00661___gerKC
# 2: BL01752___gerKC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1372
# Identity:     783/1372 (57.1%)
# Similarity:   783/1372 (57.1%)
# Gaps:         296/1372 (21.6%)
# Score: 1821.5
# 
#
#=======================================

BSNT_00661___      1 ATGGTACG------TAAATGTCTATTAGTCGTTCTCATGCTTTTGAG-CG     43
                     |||..|||      ||||     |||    ||.|||.|.|||    | ||
BL01752___ger      1 ATGAAACGAATCGTTAAA-----ATT----GTGCTCCTACTT----GCCG     37

BSNT_00661___     44 CCATTG---TGCTGCCCGGCTGCTGGGATAAGAGGGAGCTGACGGATCT-     89
                     ||||||   |.||.|..||.|||||||||||.||.||||||||.||||| 
BL01752___ger     38 CCATTGTCCTTCTTCAAGGGTGCTGGGATAAAAGAGAGCTGACAGATCTG     87

BSNT_00661___     90 -TGCGATTATCTCGGCGATTGGCATCGATCGGACAAACG-------ACAG    131
                      |||  |.|||.|.||.||.||.||.|||     |||.|       ||||
BL01752___ger     88 CTGC--TGATCACTGCCATCGGTATTGAT-----AAAGGTAAAGATACAG    130

BSNT_00661___    132 CAACTACG-----TGCTGCATCTTCAAATTATCAATCCAGGGAATGTTGC    176
                       |.||||     .|||     .|||.||..|||||||....|||||..|
BL01752___ger    131 --ATTACGAATTAAGCT-----ATCAGATCGTCAATCCGATCAATGTGAC    173

BSNT_00661___    177 CGGCTACCTTCAGGGAGGAGGTGGTGGAGACAGGCCGCCTGTATCTGTCT    226
                     .|||..||||||.||.|||...||.||||||||||||||..|.||...||
BL01752___ger    174 AGGCGGCCTTCAAGGCGGACAGGGAGGAGACAGGCCGCCGATTTCAAGCT    223

BSNT_00661___    227 ATTCGAT-TGA-AGGTAACAATTTAACGGA----AGCACTCAGAAAAGCC    270
                     ||||  | ||| .||.||||||.|.|||||    ||    ||||.|.||.
BL01752___ger    224 ATTC--TGTGACGGGCAACAATCTGACGGAAATGAG----CAGACATGCG    267

BSNT_00661___    271 TC--CATAAAGGTATCACGGCGGCTTTATTTTGCCCATACCAATCTAGTC    318
                     ||  ||.|||  |.||.|||....||||||...||||.|||||.||.||.
BL01752___ger    268 TCAGCAAAAA--TGTCGCGGGAAATTTATTACTCCCACACCAACCTCGTG    315

BSNT_00661___    319 GTGATCAATGAAAAGCTGGCAAAAGAAGAAGGTTTG-----GATTTTGTA    363
                     ||..||.|||||||.||.||.||.||.|||||.|||     .|||.||  
BL01752___ger    316 GTTGTCGATGAAAAACTCGCCAAGGAGGAAGGCTTGATCAAAATTCTG--    363

BSNT_00661___    364 TTAGATAATCTTGACCGGGACACAGAATTTAGGTCAACAGCAAC-ATTCG    412
                        |||..|||||||||||||||.||.|||.|..||||.||.|| |||..
BL01752___ger    364 ---GATGTTCTTGACCGGGACACCGATTTTCGTACAACGGCGACGATTAT    410

BSNT_00661___    413 TCGTT-----GCCCATAAAACAAAAGCAGAAAATATTGTGAAAATC----    453
                     |..||     |.|||      |||||| |||||.|||     .|||    
BL01752___ger    411 TATTTCCCGCGGCCA------AAAAGC-GAAAACATT-----CATCCGGA    448

BSNT_00661___    454 --TTGACGCCAATTGATAAAATTCCATCAAATAAAGTCAATAAAACCTTG    501
                       .|||||||.||.|||||.||.||.|||||||||||.||.|||||..||
BL01752___ger    449 CGCTGACGCCGATCGATAAGATCCCGTCAAATAAAGTAAACAAAACGCTG    498

BSNT_00661___    502 GATTTCACGGAGGCGCAATACGGG----CAGGTGGTCAATACCAATATTC    547
                     .|.||.||.||.|.|| ||..|||    ||..||   ||.||.|...|.|
BL01752___ger    499 CAATTTACCGAAGAGC-ATTTGGGAGAACATATG---AAAACGAGCGTCC    544

BSNT_00661___    548 AGGACGTTTTGAA------AACACTTGCCGCCAACACTATGGCACCGG--    589
                     ||||.||..|.||      |||| |.|..|.|||      .|||||.|  
BL01752___ger    545 AGGATGTCATCAAGTGCTTAACA-TCGAAGGCAA------AGCACCCGAT    587

BSNT_00661___    590 ----TCATCCCCGGATTTATGATGATTGGTGACGATAAAAAAGGAGTCAG    635
                         ||.|||     ||||...|.|..||..||.|..||||.||.|..|.
BL01752___ger    588 TATTTCTTCC-----TTTAAAGTAACCGGAAACAAGGAAAAGGGTGAAAA    632

BSNT_00661___    636 CATGGAAAACACGCAGGCGAC-TGACCCGAAAGCCATTCTTC-AGGCAGA    683
                     .|||||||||..||||.|.|| |..||.|  ||.||.|..|| |.||.||
BL01752___ger    633 AATGGAAAACGTGCAGTCTACATCTCCTG--AGGCAATAGTCGAAGCGGA    680

BSNT_00661___    684 TGGTCTGGCGGTTTTTGATAAGGCAGGATATTTAAAG------TATTGGC    727
                     .||..|||||||..||.|..|||         .||||      .||||||
BL01752___ger    681 CGGCTTGGCGGTCATTAAAGAGG---------GAAAGCTCGTCAATTGGC    721

BSNT_00661___    728 TGGAAGATGATG-AAAGCGTGGGGGC-AGTCTGGC---TTATG-------    765
                     |.||||     | |||.|     ||| ||  .|||   |||||       
BL01752___ger    722 TTGAAG-----GCAAAAC-----GGCGAG--AGGCGTTTTATGGCTGCGC    759

BSNT_00661___    766 AATAAGATCCAGCA-TACGTTGATT----AATGC---TGACTGGGGCAAG    807
                     |||||.|| ||||| .||||  |||    |||.|   |||.|    ||.|
BL01752___ger    760 AATAAAAT-CAGCAGAACGT--ATTTGACAATTCCAATGAAT----CATG    802

BSNT_00661___    808 ACGAAGGATGCGGTCAGCTTGCAGGTTACCCATCAAGATACAAAGCTGGT    857
                     | ||..|||||.||||..||..|.||.|.||..|||.|.|||||..|.|.
BL01752___ger    803 A-GAGAGATGCCGTCACATTTGACGTCATCCGCCAAAAAACAAAAATCGG    851

BSNT_00661___    858 A------CCGAAAATGCGGAACGGACGTCCGTACATCCATGTGAAAGTGT    901
                     |      |.||||      |||||         ||..|..|.||   |.|
BL01752___ger    852 ATCTCACCTGAAA------AACGG---------CAAACCGGCGA---TTT    883

BSNT_00661___    902 CGGTTGAAGGTATTATTGATG-------CTGTCAAATACCCTTTCCAAT-    943
                     |||||||.|....|||.||.|       |.|..|||.|.|..|.||.|| 
BL01752___ger    884 CGGTTGACGTGGCTATGGAAGGGGACATCGGCGAAACAACTGTGCCGATT    933

BSNT_00661___    944 ----TGTCTGATCCCAAGGTGCTGGCCGCTATTGAAA--AAGCGCTCAAC    987
                         ||..||||||.||.||||||..||.|||.||||  |||....||  
BL01752___ger    934 CACCTGGATGATCCAAAAGTGCTGAGCGATATCGAAAGGAAGGTGGCA--    981

BSNT_00661___    988 AAAGAGCTTGAAAAGGAAATTAGC--CATACTG--TGAAAAAGATTAAGA   1033
                     ||.||.||..||||.|||  |.||  .|||| |  |||.|..| |||||.
BL01752___ger    982 AAGGAACTGAAAAATGAA--TTGCAGAATAC-GATTGACATTG-TTAAGC   1027

BSNT_00661___   1034 AGAATAAAATAGATTTT------ATCGGTTTTGGTGACACGATATATAGA   1077
                     .|||.||.|..|||.||      .|||||..||.||      |.|||.|.
BL01752___ger   1028 GGAACAAGACGGATGTTCTGCAATTCGGTGATGTTG------TGTATCGC   1071

BSNT_00661___   1078 AAGTATCCGGAGCAGTG-GGAGAAA-ATGAAGGACACATGGGACAAAGAA   1125
                     |...|.||.||  |||| |||.||| |||.|||....||||..|||....
BL01752___ger   1072 ACCCACCCCGA--AGTGTGGAAAAAGATGGAGGGTGAATGGAGCAATCGG   1119

BSNT_00661___   1126 TATTTGCCCGA-ACTGCC-----CAT--CGATGTGAAGGCCGAGACGTAT   1167
                     |||||.||.|| ||.|.|     |||  ||  ||.||.||  |.||||| 
BL01752___ger   1120 TATTTTCCTGACACAGACGTCGACATTACG--GTTAATGC--ATACGTA-   1164

BSNT_00661___   1168 ATCAGAAGGACGGGATTGCGAAACGATCCGATCAAACACCAGTTTAAA--   1215
                        .||||.||.||.||..|||||.|||||       |.||.|||.||  
BL01752___ger   1165 ---CGAAGAACAGGTTTAAGAAACAATCCG-------AACATTTTGAATC   1204

BSNT_00661___   1216 --GATGATTAG-----------   1224
                       .||||  ||           
BL01752___ger   1205 ATCATGA--AGGGCGTTCTTGA   1224


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