Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_01629 and BL01764

See Amino acid alignment / Visit BSNT_01629 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:06
# Commandline: needle
#    -asequence dna-align/BSNT_01629___yhdG.1.5803.seq
#    -bsequence dna-align/BL01764___yhdG.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01629___yhdG-BL01764___yhdG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01629___yhdG-BL01764___yhdG.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01629___yhdG
# 2: BL01764___yhdG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1726
# Identity:     812/1726 (47.0%)
# Similarity:   812/1726 (47.0%)
# Gaps:         662/1726 (38.4%)
# Score: 1386.0
# 
#
#=======================================

BSNT_01629___      1 ATGAAAGGGAGCGTTTTTAGGAAGAAGAGCATTCAGGATTTAATCGCTGC     50
                         |.|||        ||     ||.||||          ||       
BL01764___yhd      1 ----ATGGG--------TA-----AACAGCA----------AA-------     16

BSNT_01629___     51 GACGAGCGGTGAAAAGTCTTTAAAAAGAGAATT-----AGGGGCATTTGA     95
                              |||||       ||||.||    |     ||..|.||.||.
BL01764___yhd     17 ---------TGAAA-------AAAACGA----TGTCGCAGACGGATGTGC     46

BSNT_01629___     96 TTTAACATTGCTTGGAATCGGCGCCATTAT----TGGCACAGGGATTTTT    141
                     |     |||..|.|..|||||.||.||..|    |||..|.|||    |.
BL01764___yhd     47 T-----ATTTTTAGCGATCGGAGCTATGCTCGGCTGGGGCTGGG----TC     87

BSNT_01629___    142 GTTCT-------GACGGGA-----ACAGGTGCAGTCACGGCCGG--TCCC    177
                     ||.||       |||.|||     |||            |||||  |...
BL01764___yhd     88 GTCCTTTCCGGCGACTGGATTTCGACA------------GCCGGCTTTTT    125

BSNT_01629___    178 GGGCTG-ACGATTTCATTTGTTGT-GGCGGC--GCTGG----CTT-----    214
                     ||||.| |||||..|.|||.|..| ||||||  .||.|    |||     
BL01764___yhd    126 GGGCAGCACGATCGCGTTTATCATCGGCGGCATACTCGTCATCTTAATCG    175

BSNT_01629___    215 -GTTTA--TTCGCCGCCCTGTCTT--------------AC-----GCGG-    241
                      |||.|  |.|||.|..|||||||              ||     |||| 
BL01764___yhd    176 GGTTAACGTACGCGGAGCTGTCTTCTGCCATCCCTGAAACGGGTGGCGGC    225

BSNT_01629___    242 --AATTTGCGTCAAGTGTGCCTGTTTCAGGTTCGGTGTATACA----TTC    285
                       .||||.||||.|..|.||         ||||||...|.|.|    || 
BL01764___yhd    226 TTGATTTTCGTCTACAGGGC---------GTTCGGACGAAAAACGGCTT-    265

BSNT_01629___    286 ACTTAT-GCGACATTGGGAGAGCTTATGGCCTTTATTATCGGGTGGGATT    334
                       ||.| ||..|.|.|||.|.|||..|.|.||.|.|| |||   |.||||
BL01764___yhd    266 --TTGTCGCCGCTTGGGGTGTGCTGTTCGGCTATGTT-TCG---GTGATT    309

BSNT_01629___    335 TAATTTTAGAATACATGCTGGCGGTAAGTGCAGTG----------TCGGT    374
                     ..||||.|           ||||||   .|||.||          |||.|
BL01764___yhd    310 ACATTTGA-----------GGCGGT---CGCATTGCCTACCGTCATCGAT    345

BSNT_01629___    375 --CGGCTGGTCTGGTTATTTCCAATCGTTTTTATCAGGGCTCGGCATTCA    422
                       ||.|..|.|||      ||.||       .|||||||.|     ||| 
BL01764___yhd    346 TACGTCCTGCCTG------TCGAA-------CATCAGGGGT-----TTC-    376

BSNT_01629___    423 TCTTCCGGTTGCTTTAACAGCGGC----ACCGGGCGCAGTGAAAGGCACC    468
                        ||.|||.|||    .||||||    ||        |||.|.|.|||.
BL01764___yhd    377 ---TCTGGTCGCT----AAGCGGCTGGGAC--------GTGTATGTCACT    411

BSNT_01629___    469 TTTACCCTGT-TTAATC--TTC-----CTGCATTCGTCATTGTAATGGCG    510
                     |     ..|| ||.|||  |||     .|||..|||||   .|.|..|||
BL01764___yhd    412 T-----GGGTGTTGATCGGTTCGGGAGGTGCGGTCGTC---CTGACAGCG    453

BSNT_01629___    511 ATCACATATTTGCTTTATTTAGGCATCAA--------AGA---ATCAAAA    549
                     .|||         .|||.||.|||.||||        .||   .||    
BL01764___yhd    454 CTCA---------ATTACTTCGGCGTCAAGCCGGCCGCGATTTTTC----    490

BSNT_01629___    550 AGAGTCAACAATATCATGGTTATCTTGAAGAT-------------ACTGG    586
                       ||||           ||   ||||.|.|||             ||.||
BL01764___yhd    491 --AGTC-----------GG---TCTTTACGATTGCGATTATCGCCACGGG    524

BSNT_01629___    587 TTGTTCTGCTGTTTATCGCGGTGGCAGCC---GTTTAC-GTGAAGCCGCA    632
                     .| ||||.||.||     .||.||| |||   ||..|| ||||...||.|
BL01764___yhd    525 CT-TTCTCCTTTT-----GGGCGGC-GCCTTGGTAAACGGTGATTTCGAA    567

BSNT_01629___    633 CAACTG-GCAG-CCGTTTATGCCAATG--GGCTTTGGCGGCGTGTTCAGT    678
                     ||  || .||| ||.|||.|   ||.|  ||.|||..|||..||.|  ||
BL01764___yhd    568 CA--TGTACAGCCCCTTTTT---AAAGACGGGTTTTCCGGTATGAT--GT    610

BSNT_01629___    679 GCAGCGGCGCTCGT----ATTC--TTTGCT-TTTATCGGATTTGACGCTG    721
                         |.|..||.||    ||||  ||| || |||.|||||||||||   |
BL01764___yhd    611 ----CCGTCCTTGTCATGATTCCGTTT-CTATTTGTCGGATTTGAC---G    652

BSNT_01629___    722 T-ATCCTCT---GCTGCGGAAGAAA---------CGAAAAATCCCGCGAA    758
                     | |||| ||   |.|||||..||||         |||||||       ||
BL01764___yhd    653 TCATCC-CTCAGGTTGCGGCTGAAATTAATGCCCCGAAAAA-------AA    694

BSNT_01629___    759 GGATCTGCCTAAA-----GGCATTATT----TTCTC-------------T    786
                     ..|||.||  |||     |  ||||||    ||.||             |
BL01764___yhd    695 TCATCGGC--AAAATTTTG--ATTATTTCGATTATCAGTGCGGTCGTGTT    740

BSNT_01629___    787 TTATTGGTCTGCACGATTTTATATGTCACCGTATC---------------    821
                     |||||    ||| .||||.|||   ||..||||.|               
BL01764___yhd    741 TTATT----TGC-TGATTGTAT---TCGGCGTAACGATGGGTCTGTCAGA    782

BSNT_01629___    822 -AGCGATCATG--------ACTGGGGTTATCCCGTTTGC-----TCAATT    857
                      |||||.|.||        .||..||..|.|.||..|||     |||||.
BL01764___yhd    783 AAGCGAGCTTGCGACGACTTCTTTGGCAACCGCGGATGCAATGGTCAATC    832

BSNT_01629___    858 TG--CGGG-------TGT--GGATCATCCGGTTTCTCTAGTTCTTCAAAG    896
                     ||  ||||       |||  ||  ||  ||||   .||.||.||      
BL01764___yhd    833 TGCTCGGGAACCAGCTGTTCGG--CA--CGGT---GCTTGTCCT------    869

BSNT_01629___    897 CGCAGGGCAAAACTGG-GTGGCTGGCATCATTGATATTGGCGCCGTGCTG    945
                         .|||      || ||.||.||.||||||          .||.||| 
BL01764___yhd    870 ----CGGC------GGCGTCGCCGGAATCATT----------ACGAGCT-    898

BSNT_01629___    946 GGAATGACAACAGTTATGCTTGTGATGCTTTACGGGCAGACACGCG----    991
                     ||||.|    ||.||||..|            |||       ||||    
BL01764___yhd    899 GGAACG----CATTTATCAT------------CGG-------CGCGAGCC    925

BSNT_01629___    992 ----TCATGTTTGCCATGTC-----------TCGTGACGGACTTGTGCCG   1026
                         || |||||||.|||||           |.|||.||.|.|.||.|  
BL01764___yhd    926 GGATTC-TGTTTGCAATGTCGGAAAAGGGCATGGTGCCGAAATGGTTC--    972

BSNT_01629___   1027 GGC-TCACTTTCTAAAGTGCATCCAAAGCACAAAACAC---CTTATGTGG   1072
                     ||| |||          |.|||||.|||.|.|||||.|   ||.||   |
BL01764___yhd    973 GGCTTCA----------TCCATCCGAAGTATAAAACGCCGACTAAT---G   1009

BSNT_01629___   1073 CCACTTGGTTTTTCGGAACGATGTCG---------GCGCTTCTCGG----   1109
                     |.|.||..|||.|.||..||.||.||         .||||.|||||    
BL01764___yhd   1010 CAATTTTATTTCTGGGTGCGCTGGCGTTTTTTGCCCCGCTGCTCGGACGC   1059

BSNT_01629___   1110 -CT-CACTTGTTCCGCTGGATGAACTTGCAAAGC-TGGTGAACATCGGGA   1156
                      || |.||||||    |||||   |.| |||.|| .||.|||||  ||.|
BL01764___yhd   1060 CCTGCCCTTGTT----TGGAT---CGT-CAATGCAGGGGGAACA--GGTA   1099

BSNT_01629___   1157 -CACTGTCGG-CATTT----GTCCTGATTTCTGTGGCAGTTAT----CGT   1196
                      .|..||||| .||||    |||..||||      |||.|.||    |  
BL01764___yhd   1100 TTATAGTCGGATATTTGATCGTCTCGATT------GCATTCATGAAGC--   1141

BSNT_01629___   1197 TTTGAGAAAGA-AGCAGCCCGATCTTCCGAGAGCCTT----------TAA   1235
                       |||||||.| || ||||.|||.|.|..|| |||.|          |||
BL01764___yhd   1142 --TGAGAAAAACAG-AGCCGGATTTACACAG-GCCGTATAAAATCAATAA   1187

BSNT_01629___   1236 ATG------CCCGGGAGTTCCGGTTATCC----CAGGCCTGGCGATTCTG   1275
                     .||      ..||||..|..|.|.|||||    .||   ||    ||.|.
BL01764___yhd   1188 GTGGAAAACAACGGGTATATCTGCTATCCTCTTAAG---TG----TTATC   1230

BSNT_01629___   1276 TTC--TGCCTGTTCTTGATTTTAAATCTGGGATG--GGTGACGAT----T   1317
                     |||  |||||    ||.||||   ..|.||.|||  ||...||.|    |
BL01764___yhd   1231 TTCCTTGCCT----TTTATTT---GCCAGGCATGCCGGCCGCGCTCACAT   1273

BSNT_01629___   1318 GTCCGCTTCCTA-GTGTGGCTGTTAAT--CGGCTTGGTAATTTA-----T   1359
                     |.|||     || |.|||||||.|..|  |||..|||..|||.|     |
BL01764___yhd   1274 GGCCG-----TATGAGTGGCTGATCTTGGCGGGATGGACATTGATCGGTT   1318

BSNT_01629___   1360 TTCCTGTATTCAAGAAAGCA-TTCAAAA-TTAAA-----------TCAAT   1396
                     |||.|.|||.||  |.|||| ||||||| .||||           ||||.
BL01764___yhd   1319 TTCTTTTATACA--ACAGCAGTTCAAAACGTAAAGGGGAGGAGATTCAAC   1366

BSNT_01629___   1397 AA------------------------   1398
                     |.                        
BL01764___yhd   1367 ATGACCAGCATGCTAGAAGTATATAA   1392


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.