Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00426 and BL01780
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:04
# Commandline: needle
# -asequence dna-align/BSNT_00426___ybgF.1.5803.seq
# -bsequence dna-align/BL01780___ybgF.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00426___ybgF-BL01780___ybgF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00426___ybgF-BL01780___ybgF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00426___ybgF
# 2: BL01780___ybgF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1473
# Identity: 1042/1473 (70.7%)
# Similarity: 1042/1473 (70.7%)
# Gaps: 144/1473 ( 9.8%)
# Score: 3844.5
#
#
#=======================================
BSNT_00426___ 0 -------------------------------------------------- 0
BL01780___ybg 1 ATGGAACAGTCAAACACCAATCGCCAGAACTTTCAAAGAAAAATGCAAAC 50
BSNT_00426___ 1 -------------ATGCTTTCCTTGGGAGGTGTCATCGGAACCGGGCTGT 37
|||||||||||.|||||.||.|||||.||.||.||.|
BL01780___ybg 51 GAGACACCTTATCATGCTTTCCTTAGGAGGCGTTATCGGCACGGGCCTTT 100
BSNT_00426___ 38 TTTTAAGCTCAGGTTATACCAT-TCAGCAAGCAGGCCCGGCCGGAACGAT 86
|.|||||.||.||||||||.|| ||| ||.||.||.||.|||||||||||
BL01780___ybg 101 TCTTAAGTTCCGGTTATACGATCTCA-CAGGCTGGTCCTGCCGGAACGAT 149
BSNT_00426___ 87 ACTCGCCTACTTAGTCGGTGCCGGC----ATCGTCTATCTGGTCATGCTC 132
.||.||||||||.|.||| ||| ||||||||.||.|||||||||
BL01780___ybg 150 TCTAGCCTACTTGGCCGG----GGCTCTGATCGTCTACCTTGTCATGCTC 195
BSNT_00426___ 133 TGCCTCGGTGAGCTGTCAGTCGCCATGCCTGTGACCGGCGCCTTTCACAC 182
||||||||.||..|.||.||||||||||||||.|||||..|.|||||.|.
BL01780___ybg 196 TGCCTCGGCGAATTATCGGTCGCCATGCCTGTCACCGGATCGTTTCATAT 245
BSNT_00426___ 183 CTATGCAGCCAAATACATAGGGCCGGGCACCGGATTTACGGTCGCTTGGC 232
.||.||..|||.||.|||.|||||||||||||||||.||.|||||.||||
BL01780___ybg 246 GTACGCCTCCAGATTCATCGGGCCGGGCACCGGATTCACCGTCGCCTGGC 295
BSNT_00426___ 233 TGTACTGGCTGACATGGACCGTGGCATTGGGATCAGAATTCACAGCAGCC 282
|.|||||||||||.|||.|.||.||..|.||.||.|||||.||.||.|||
BL01780___ybg 296 TATACTGGCTGACCTGGGCTGTCGCGCTCGGTTCGGAATTTACCGCTGCC 345
BSNT_00426___ 283 GGCCTGTTAATGCAGCGCTGGTTCCCCCATACATCGGTTTGGATGTGGAG 332
||..|.|||||||||||||||||||||.||||.||.||.|||||||||||
BL01780___ybg 346 GGGTTATTAATGCAGCGCTGGTTCCCCGATACTTCAGTCTGGATGTGGAG 395
BSNT_00426___ 333 TGCCGTCTT---TGCGCTGTTCATTTTCTTGCTTAACGCATTTTCGGTCA 379
.||.||.|| |||.||| ||||||..|||.||.||..|.||.||.|
BL01780___ybg 396 CGCGGTATTCGCTGCACTG---ATTTTCGCGCTCAATGCTGTCTCAGTGA 442
BSNT_00426___ 380 AGTTTTTCGCTGAATCAGAATTTTGGTTTTCCAGCATCAAAGTATTAGCC 429
..||||||||.|||||.||||||||||||||.|||||.|||||..|.|||
BL01780___ybg 443 GATTTTTCGCCGAATCCGAATTTTGGTTTTCAAGCATTAAAGTGCTTGCC 492
BSNT_00426___ 430 ATTGTATTATTTATTCTTTTAGGCGGCTCTGCCATGTTTGGCATCATTCC 479
|||.||||.||||||.|.|||||.||..|.||.||.||.||||||||.||
BL01780___ybg 493 ATTATATTGTTTATTATATTAGGAGGAGCGGCGATATTCGGCATCATCCC 542
BSNT_00426___ 480 GAT--CAAAGGCGGAGAAGCCGCTCCGATGCTGTCCAACTTCATG--GCG 525
||| .|||.|| |||.||.||.|||.|.||.||.||||| || |..
BL01780___ybg 543 GATACAAAATGC--AGACGCTGCACCGCTTCTTTCAAACTT--TGCAGGA 588
BSNT_00426___ 526 GAAGGCGGGCTTTTTCCAAATGGATTTGTCCCGATTTTGATGACGATGCT 575
||||||||.||.||||||||.||.||..|.||.|||||.|||.|||||||
BL01780___ybg 589 GAAGGCGGTCTCTTTCCAAACGGCTTCCTTCCAATTTTTATGGCGATGCT 638
BSNT_00426___ 576 GTCCGTTAATTTTGCCTTTTCGGGAACGGAACTAATCGGAATCGCAGCCG 625
.|||||.||||||||.||||||||.|||||.||.||||||||.||.||||
BL01780___ybg 639 CTCCGTGAATTTTGCGTTTTCGGGTACGGAGCTGATCGGAATTGCCGCCG 688
BSNT_00426___ 626 GTGAAAGCGTTGATCCTGACAAGACAATACCAAAAGCGATTAAAACAACG 675
|.|||||||..||.||.||.||||..||.|||||||||||.||.|||||.
BL01780___ybg 689 GAGAAAGCGCCGAACCGGAAAAGAACATTCCAAAAGCGATCAAGACAACA 738
BSNT_00426___ 676 GTCTGGCGTCTCTCACTCTTCTTTGTCGGAACAATTTTTGTGCTGTCAGG 725
.|||||.|.||....||.|||||..|||||||.|||||.|||||.||..|
BL01780___ybg 739 CTCTGGAGACTGGTGCTTTTCTTCATCGGAACGATTTTCGTGCTTTCGTG 788
BSNT_00426___ 726 GCTGATTCCGATTCAAGATGCAGGTGTCATCAAAAGCCCGTTTGTCGCTG 775
.||.||||||.||.||||.||.|||||.|||||||||||.|||||||..|
BL01780___ybg 789 CCTCATTCCGGTTAAAGAAGCCGGTGTGATCAAAAGCCCATTTGTCGACG 838
BSNT_00426___ 776 TCTTTGACAGAGTCGGTGTACCATACGCAGCCGATATCATGAACTTTGTT 825
||||||||.|..|||||||.|||||.||.|||||.||||||||||||||.
BL01780___ybg 839 TCTTTGACCGCATCGGTGTTCCATATGCGGCCGACATCATGAACTTTGTA 888
BSNT_00426___ 826 ATCCTGACAGCGATCCTGTCAGCGGCTAATTCCGGACTCTACGCTTCTTC 875
||.|||||.||..|.||.||.|||||.||.||.||..|.||.||.|..||
BL01780___ybg 889 ATTCTGACGGCTCTGCTTTCCGCGGCCAACTCAGGCTTGTATGCATGCTC 938
BSNT_00426___ 876 CCGGATGCTGTGGTCTTTATCAAAAGAAAAAACGCTTCATCCGACATTTG 925
|||||||||.|||||..|.||||||||||||||..|.||.||...||||.
BL01780___ybg 939 CCGGATGCTCTGGTCACTGTCAAAAGAAAAAACTTTGCACCCCGTATTTC 988
BSNT_00426___ 926 CAAAGCTGACGTCAAAAGGAACCCCTTTTAACGCGCTGGTGTTCAGCATG 975
.|||||||||.|||...||||.|||.||.|||||||||.|.|||||||||
BL01780___ybg 989 AAAAGCTGACTTCACGGGGAATCCCGTTGAACGCGCTGATCTTCAGCATG 1038
BSNT_00426___ 976 ATCGGCGGCATTCTGTCGTTGCTGTCCAGCGTATTTGCGCCAGACACTGT 1025
.|||||||||||||||||.||||.||||||||.||||||||.||..|.||
BL01780___ybg 1039 CTCGGCGGCATTCTGTCGCTGCTCTCCAGCGTGTTTGCGCCTGATTCCGT 1088
BSNT_00426___ 1026 ATACGTTGTGCTCGTGTCGATTTCCGGTTTTGCCGTCGTTGTCGTGTGGA 1075
.|||.|.||.||.|||||||||||.||.||||||||.||||..||.||||
BL01780___ybg 1089 CTACATCGTTCTTGTGTCGATTTCAGGGTTTGCCGTTGTTGCTGTCTGGA 1138
BSNT_00426___ 1076 TGGGAATCGCTGCTTCTCAATTCATGTTCAGAAAACGTTATATCGAAGCG 1125
||.|.||.||.|||||.||.|||||||||.|.|.|||.|.|.|.|..|.|
BL01780___ybg 1139 TGAGCATTGCGGCTTCGCAGTTCATGTTCCGCAGACGCTTTTTGGCTGAG 1188
BSNT_00426___ 1126 GGAAACA----AGGTTACTGATTTGAAATACAGAACCCCTTTGTATCCGT 1171
||||||| || || ||.||.||||||.|.||.||..|.||||||.
BL01780___ybg 1189 GGAAACACCGCAG---AC-GACTTAAAATACCGGACACCGCTTTATCCGG 1234
BSNT_00426___ 1172 TCGTGCCGATTGCTGCGTTCCTGTTATGCCTGGCTTCCGTTG--TTGGCA 1219
.|||.||||||||.||.||.|||.||||||||||.||| || ||||||
BL01780___ybg 1235 CCGTACCGATTGCCGCTTTTCTGCTATGCCTGGCATCC--TGCATTGGCA 1282
BSNT_00426___ 1220 TTGCCTTTGATCCGAATCAAAGAATCGCACTCTATTGCGGCGTTCCATTT 1269
||||||||||||||||.|||||.|||||.||.|.||||||.||.||.|||
BL01780___ybg 1283 TTGCCTTTGATCCGAACCAAAGGATCGCCCTTTTTTGCGGTGTGCCGTTT 1332
BSNT_00426___ 1270 ATGGCCATTTGCTATGCAATATATTATGTAAAAAACCGCAAAA------G 1313
|||||..|.||||||.|.||.|||||||.||.||||||.|||| |
BL01780___ybg 1333 ATGGCGTTATGCTATACCATCTATTATGCAACAAACCGAAAAAATAGCTG 1382
BSNT_00426___ 1314 CCAGCCGGCTG---CTGATATGA------------------CTTATTC-- 1340
..|.|||.||| |.|.||.|| |.|.|||
BL01780___ybg 1383 GAATCCGTCTGAGCCCGTTAAGAATGCAAGTTTGCATGTTTCATTTTCTG 1432
BSNT_00426___ 1341 ---------AAAATAA------- 1347
||||.||
BL01780___ybg 1433 AATACGAGGAAAAGAAAAACTAA 1455
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