Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03073 and BL01787

See Amino acid alignment / Visit BSNT_03073 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:46
# Commandline: needle
#    -asequence dna-align/BSNT_03073___yoaA.1.5803.seq
#    -bsequence dna-align/BL01787___ynaD.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03073___yoaA-BL01787___ynaD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03073___yoaA-BL01787___ynaD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03073___yoaA
# 2: BL01787___ynaD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 648
# Identity:     326/648 (50.3%)
# Similarity:   326/648 (50.3%)
# Gaps:         225/648 (34.7%)
# Score: 640.5
# 
#
#=======================================

BSNT_03073___      1 ATG-------TTTCCTATATTAGAAACGGATCGGCTTACACTTAGGCAAA     43
                     |||       ||   |||| .|||||  |||.|      ||||.|..|||
BL01787___yna      1 ATGGAAACCCTT---TATA-CAGAAA--GATTG------ACTTTGAGAAA     38

BSNT_03073___     44 TCACTGAT-------CAGGATGCGGAAGCCATTT----TTGCTTGTTTCT     82
                          |||       .|||||||.||.|.|.|.|    .|.||.|    |
BL01787___yna     39 -----GATGGAATTGGAGGATGCAGATGTCCTCTGTCAATACTGG----T     79

BSNT_03073___     83 CAAACGATGAGGTGACACGCTATTATGGGCTTGAAA-ACATGGA-ATC--    128
                     ||.||...||.||.|||                ||| |.|||.| |||  
BL01787___yna     80 CAGACCCGGAAGTCACA----------------AAATATATGAATATCGC    113

BSNT_03073___    129 ------TATAGA------ACA------GGCCAT----------TTCAATG    150
                           ||.|||      |||      ||.|||          .||||||
BL01787___yna    114 GCCTTTTACAGACGTCTCACAAGCGCGGGACATGATCCAAATGATCAATG    163

BSNT_03073___    151 ATTCAAACGTTTGCTGCCCTCTATCAAGAA--------AAACGCGGTATA    192
                     |||.||.|.||                |||        |||| ||.|.|.
BL01787___yna    164 ATTTAAGCCTT----------------GAAGGGCAGGCAAAC-CGCTTTT    196

BSNT_03073___    193 CGGTGGGGAATTG-AAAG---ACGGGACACTAAAGAACTGATCGGAACAA    238
                     ||.|    .|||| ||||   |||||       .|||.|.|||||.|||.
BL01787___yna    197 CGAT----TATTGCAAAGGAAACGGG-------TGAAGTCATCGGGACAT    235

BSNT_03073___    239 TAGGCTTTCACGCTCTG---GCCCA--AAAGCATAGGC-GCGCGGAGATC    282
                     ..||||||.|   |.||   |.|||  |||.|   ||| |.||.||.|||
BL01787___yna    236 GCGGCTTTAA---TATGATCGACCAGGAAAAC---GGCAGAGCTGAAATC    279

BSNT_03073___    283 GGTTAT----------GAAATCATCCCGGAGCATTGGCGAAACGGATTTG    322
                     ||.|||          |||||          ||||||.||||.||.||||
BL01787___yna    280 GGCTATGACTTAGGAAGAAAT----------CATTGGGGAAAAGGCTTTG    319

BSNT_03073___    323 CATCAGAAGTCATTTCAAAGGTCGTATC--TTACGGATTTTC-TGCCCTT    369
                     |.||.||||  .|.|||||...|..|||  .|||||.|||.| .|  |||
BL01787___yna    320 CTTCCGAAG--CTGTCAAAAAACTGATCGACTACGGCTTTACAAG--CTT    365

BSNT_03073___    370 GGACTGTC--GCGTATTG--GCGCAGTTGTATTTACCGCTAATGAAGC--    413
                     |.|| .||  .||.||.|  |||.||  |||....||| .||..|.||  
BL01787___yna    366 GAAC-CTCAACCGAATCGAAGCGAAG--GTAGAGCCCG-AAAACACGCCT    411

BSNT_03073___    414 ---ATCAAATCGTCTGCTTCTAAAAATGGGT----TTTCAAAAAGAAGGC    456
                        ||||||       ||||| .||.|.|.|    ||||||||.|||||.
BL01787___yna    412 TCAATCAAA-------CTTCT-CAACTCGTTATCCTTTCAAAAGGAAGGA    453

BSNT_03073___    457 GTTTTAAGACAGTAC-ATGTATCAAAATGG------GATTCCATATGA--    497
                     .|.||||||.|.||| |...|.||||| ||      |||      |||  
BL01787___yna    454 CTGTTAAGAGAATACGAGAAAGCAAAA-GGAAGACTGAT------TGACG    496

BSNT_03073___    498 TACAAATGTGTACTCTATTG-TGAAACCAAGAGAATGA----------    534
                     ||.|.||||.|.|   |.|| ||||   |||||||| |          
BL01787___yna    497 TATACATGTTTTC---ACTGCTGAA---AAGAGAAT-ACGCTGGGTAA    537


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