Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04189 and BL01798

See Amino acid alignment / Visit BSNT_04189 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:16
# Commandline: needle
#    -asequence dna-align/BSNT_04189___ysfD.1.5803.seq
#    -bsequence dna-align/BL01798___ysfD.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04189___ysfD-BL01798___ysfD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04189___ysfD-BL01798___ysfD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04189___ysfD
# 2: BL01798___ysfD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1418
# Identity:     960/1418 (67.7%)
# Similarity:   960/1418 (67.7%)
# Gaps:         178/1418 (12.6%)
# Score: 3154.0
# 
#
#=======================================

BSNT_04189___      1 ATGACAACAG----AAAAAGAAA------TGAAACAGATCCAAGATAAAT     40
                     |||||.||||    ..|||||||      || |||||         .|.|
BL01798___ysf      1 ATGACGACAGCTGACGAAAGAAAGGTCATTG-AACAG---------CAGT     40

BSNT_04189___     41 TTAAAGAGCGTATGGATGAAGGCGAGTTATTAAATTGTATGCGCTGCGGC     90
                     |||||.|..|.||||||||.|..|||.|..|.|||||.||||||||||||
BL01798___ysf     41 TTAAACAAAGAATGGATGAGGAAGAGCTGCTGAATTGCATGCGCTGCGGC     90

BSNT_04189___     91 TTCTGTCTTCCTTCCTGTCCGACCTATATCGAATCGGGATTTCATGAAAC    140
                     ||||||||.||.||.||.||.|||||.||||||||.||.|||||.||||.
BL01798___ysf     91 TTCTGTCTGCCGTCATGCCCCACCTACATCGAATCCGGTTTTCAAGAAAG    140

BSNT_04189___    141 ACACTCTCCGCGCGGGCGTATCGCCTTAATGAAAGCCGTAGCGGACGGTA    190
                     .||.|||||||||||.||.|||||..|.||||||||.||.|..||.||.|
BL01798___ysf    141 CCATTCTCCGCGCGGACGCATCGCGCTCATGAAAGCGGTCGTCGATGGGA    190

BSNT_04189___    191 TGATTGAACCGGATGAAGATGTCGAACGGTCGCTGTCACTTTGCCTTGGC    240
                     .|||.||.||.|||||.||||||||||||||.||....||||||||.|||
BL01798___ysf    191 CGATCGAGCCTGATGAGGATGTCGAACGGTCACTCGAGCTTTGCCTCGGC    240

BSNT_04189___    241 TGCCGCGCCTGTGAGCCTGTATGCCCGTCTGGCGTGAAATACGGTCAGC-    289
                     ||||||||.|||||.|||||.||.|||||.|||||.||.|||||.| || 
BL01798___ysf    241 TGCCGCGCGTGTGAACCTGTTTGTCCGTCAGGCGTAAACTACGGAC-GCT    289

BSNT_04189___    290 TGCTTGAGGAAGCCAGAGATATTATCCACCAAAATAAAAAACACTC----    335
                     |||||||.|||||.|||||||||||.||.||.||.|||||.|||.|    
BL01798___ysf    290 TGCTTGAAGAAGCGAGAGATATTATTCAGCAGAACAAAAAGCACGCCTTT    339

BSNT_04189___    336 -----------GCT---CGGCGCACGTGTCATGCGAAAGGCGGCTTTTCA    371
                                |||   |.|||||   || ||.| ||||  |||||||| 
BL01798___ysf    340 CCGGTTAAAGTGCTTCGCCGCGCA---GT-ATTC-AAAG--GGCTTTTC-    381

BSNT_04189___    372 CGAGCTGTTTCCGCATCAAAACCGCAT----GCGCTCAGCTGTAAGCCTT    417
                               ||.||||.||||.|.||    |||||.|.|.|.|.||   
BL01798___ysf    382 ----------CCCCATCCAAACAGAATCAGGGCGCTGACCGGAATGC---    418

BSNT_04189___    418 ATCGGTTTGTATCAGCGGTCAGGACTGCAAACCGCTG-TGCGTAAAACCG    466
                      ||||.|||||||||||.||.||..||||||.|| || |.||.|||.|||
BL01798___ysf    419 -TCGGCTTGTATCAGCGTTCCGGCATGCAAAACG-TGATTCGCAAATCCG    466

BSNT_04189___    467 GTATGCTTCGCGTCCTGCCTGAGCA-TTTGCGAACGATGGAAGCTGTTCT    515
                     |..||||.||..|..||||.||.|| .|.||||| ||||||.||.|||.|
BL01798___ysf    467 GCTTGCTCCGGCTTTTGCCGGACCACCTCGCGAA-GATGGAGGCGGTTTT    515

BSNT_04189___    516 TCCTGATGTTCCAAAAAGCAAAGACATGAAACATCGGCCGC----GTTTC    561
                     .||..|.|||||.||.|..|||.|..|||||.|.|||||||    |.|.|
BL01798___ysf    516 GCCGAAGGTTCCTAATATGAAACAGCTGAAAAAACGGCCGCACCTGCTCC    565

BSNT_04189___    562 CTGCCGTCAATTGGCCCCATGAAAAAACGGGTCGCCTTTTTTTCGGGCTG    611
                     |||    |.||.||....|..||||||||||.|||||||||.||.|||||
BL01798___ysf    566 CTG----CGATCGGGGAGAGAAAAAAACGGGCCGCCTTTTTCTCAGGCTG    611

BSNT_04189___    612 CTTAATGGATACGATGTTTT----TACCGACTAACAATGCCA--CATTGA    655
                     ..|.|||||||||.||||||    || |||.|    |||.||  ||||| 
BL01798___ysf    612 TCTCATGGATACGCTGTTTTTGGATA-CGAAT----ATGGCAACCATTG-    655

BSNT_04189___    656 AGCTTTTACAGCTGGCAGGCTGCGACATTGTCATTCCGCCTGAA---CAG    702
                     ||||..|.|.||||||.||||||||.||..|.|||   ||.|||   |||
BL01798___ysf    656 AGCTGCTGCGGCTGGCTGGCTGCGAGATCATAATT---CCCGAACAGCAG    702

BSNT_04189___    703 GCTTGCTGCGGGGCGCTGCATGGACACAGCGGTGAAAAAAACACAGGGAA    752
                     .|.||||||||.||.||.||.|||||||||.|.|||||         |..
BL01798___ysf    703 ACCTGCTGCGGCGCCCTCCACGGACACAGCAGCGAAAA---------GTC    743

BSNT_04189___    753 AGA---------GCTCGCGAAACAAAATATCGCTGCTTTTGAAGCGTTAG    793
                     .||         ||||||.||||.||||||....||.||.||.|..|.|.
BL01798___ysf    744 TGAGGCCATCCTGCTCGCAAAACGAAATATTCAGGCATTCGAGGATTCAA    793

BSNT_04189___    794 ACGTTGATGCTGTCATTACAAACGCAGGAGGATGCGGAGCCTTTCTCACT    843
                     |||..||...|.||||.|||||.|||||.|||||||||||.|||.|.|..
BL01798___ysf    794 ACGCGGACTTTATCATAACAAATGCAGGCGGATGCGGAGCTTTTTTAAAG    843

BSNT_04189___    844 GAATATAATCATTTGCTGAAGGATGACCCTGAGTGGTCGGAACGGGCTGC    893
                     ||||||.|||||.|.|||||.||||||.|.||.|||..|||||||||.||
BL01798___ysf    844 GAATATGATCATCTCCTGAAAGATGACTCCGAATGGCGGGAACGGGCAGC    893

BSNT_04189___    894 TGCGTTTGTTCA----AAAGCTGAAGGATTTTTCTTCTGTTTTGGTTGAG    939
                         .|..||||    |||..||||.||.||||||||.||.|||.|.||.
BL01798___ysf    894 ----ATCTTTCACAGGAAAATTGAAAGACTTTTCTTCCGTCTTGTTGGAA    939

BSNT_04189___    940 CTCGATTTCCATCA--AA----TGGATCTAGCGCTCGAGACGCCTCAGGT    983
                     ||..|.|||.||||  ||    |.||.||   ||..|||      ||..|
BL01798___ysf    940 CTGAACTTCGATCAGCAATCCCTTGAACT---GCCGGAG------CAAAT    980

BSNT_04189___    984 CGTTACCTACCAAGATTCATGCCACCTAAGAAATGTAATGCATACGT-CG   1032
                     |||.||.|||||||||||.|||||..|..|||||||.|||.|.|||| ||
BL01798___ysf    981 CGTCACATACCAAGATTCGTGCCATTTGCGAAATGTCATGAAAACGTCCG   1030

BSNT_04189___   1033 CTTGCGCCCCGCCAGCTTCTTAAAAGCATCAAAGGGGC--GGAATTCAAA   1080
                     | ||.|||..|.|..|||.||...||||||||  ||||  .||||||||.
BL01798___ysf   1031 C-TGAGCCGAGACGCCTTATTCGCAGCATCAA--GGGCATTGAATTCAAG   1077

BSNT_04189___   1081 GAAATGGAGAAAGCAGACAGCTGCTGCGGATCAGCGGGAATTTACAACAT   1130
                     ||||||.|.||.||.||.||||||||.||||||||.||.|||||.|||||
BL01798___ysf   1078 GAAATGAAAAATGCCGAAAGCTGCTGTGGATCAGCCGGCATTTATAACAT   1127

BSNT_04189___   1131 CGTCGAAGCTGAAATGTCTATGAGAATACTGGACAGTAAAATGGCTGCCG   1180
                     .||||||.|.||||||||.||||.|||.||.||.|.||||||||      
BL01798___ysf   1128 TGTCGAATCCGAAATGTCGATGAAAATTCTCGATACTAAAATGG------   1171

BSNT_04189___   1181 TCAAAGCAACCGAAGCGATCC---------TCATTGTAACAGCAAATCCC   1221
                        |||||.|.|.|||||.||         ..||.||.||.||.||||||
BL01798___ysf   1172 ---AAGCAGCAGCAGCGACCCGGGCCGCTACGATCGTTACGGCTAATCCC   1218

BSNT_04189___   1222 GGCTGCCTGCTGCAGATGAAGCTCGGCATTGAACGCGAAGGACT----AA   1267
                     ||.||.||||||||.||||||||||||||||||||.|.||||||    .|
BL01798___ysf   1219 GGATGTCTGCTGCAAATGAAGCTCGGCATTGAACGAGCAGGACTTACAGA   1268

BSNT_04189___   1268 GCGGTAAAGTCAGAGCCGTTCACCTGGCTGATTTGCTATTGGAAGCAGCC   1317
                     .||    |||.|||||||||||.|||||.|||||..||.||||   ||||
BL01798___ysf   1269 CCG----AGTGAGAGCCGTTCATCTGGCGGATTTATTACTGGA---AGCC   1311

BSNT_04189___   1318 GGGCACAAACCATCATGA   1335
                     |..||.||      .|||
BL01798___ysf   1312 GTCCAGAA------GTGA   1323


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