Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00609 and BL01819
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:14
# Commandline: needle
# -asequence dna-align/BSNT_00609___nin.1.5803.seq
# -bsequence dna-align/BL01819___nin.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00609___nin-BL01819___nin.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00609___nin-BL01819___nin.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00609___nin
# 2: BL01819___nin
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 457
# Identity: 255/457 (55.8%)
# Similarity: 255/457 (55.8%)
# Gaps: 116/457 (25.4%)
# Score: 669.0
#
#
#=======================================
BSNT_00609___ 1 TTGATCAAATCAT-GGAAGCCGCAAGAACTTTCGATTTCATATCATCAAT 49
|||||||||...| ||||| |.||||||.|..||||.|||||.|||||.|
BL01819___nin 1 TTGATCAAAAAGTGGGAAG-CACAAGAAATGACGATGTCATACCATCAGT 49
BSNT_00609___ 50 TTACTGTATTTCAAAA----GGATTCTACACCTCCTATAATGGATTGGAC 95
||||.||.|.|||.|| ||| |..||.||..|.|||||||||||
BL01819___nin 50 TTACCGTTTATCAGAAAGGCGGA----AAGCCGCCCGTTATGGATTGGAC 95
BSNT_00609___ 96 TGACGAAGCGATTGAAAAAGGATATACTGCGGCAGA-----CGGAGCCAT 140
.|||||.|..|||.|||.|||||||||..|||.||| ||| |
BL01819___nin 96 AGACGAGGATATTAAAAGAGGATATACAACGGGAGAGCACGCGG-----T 140
BSNT_00609___ 141 TTCATTTGAGGCACAGCGAAATACAAAGGC--CTTTA-------TTCTTT 181
.||.|||||.||.| .||||| || |.||| |||.| |.|.||
BL01819___nin 141 CTCGTTTGAAGCTC-TCGAAA-AC-ACGGCATCTTCAGTAGAAGTCCGTT 187
BSNT_00609___ 182 TG--CGCCTGAACAGTTCAGAAACA-GTAAACTCCTACGAAAAAAAA--- 225
|| .||| ||.||||| ||...|||||.| ||.|
BL01819___nin 188 TGAATGCC---------CAAAAACAGGTGCCCTCCTTC-----AACAGGC 223
BSNT_00609___ 226 --GTGACTGTTCCTT---------TTCATGTCACAGAAAACGGAATTCAT 264
||.||.||||||| ||.||| ||||..|..|.
BL01819___nin 224 GCGTCACCGTTCCTTTCGAAGTGCTTTATG---------ACGGGGTAGAA 264
BSNT_00609___ 265 ATTGAAAGCATTATGTCTAAGAGACTGTCCTTTGATCTGCCTAAAGGAGA 314
||||.||||.|..|.||.||||.|.||.|.|..|||.|.||..||||.|.
BL01819___nin 265 ATTGCAAGCGTCCTATCCAAGAAATTGACATGCGATATTCCGCAAGGCGC 314
BSNT_00609___ 315 CTATCAATTGACATGCTGGACTGTGCCGGCTGAAATGTCAGATTTGCACG 364
||||||..|||||||||..||..| ||||.|.||| |||.
BL01819___nin 315 CTATCAGCTGACATGCTATACAAT---------AATGCCTGAT---CACA 352
BSNT_00609___ 365 CCGACACT------------TATATTATTGATGCTGTTTCTGTGTAA--- 399
.||.|||| |||.||.|.||| |.|||
BL01819___nin 353 GCGGCACTGCACAGATCACCTATCTTCTCGAT----------TTTAAACA 392
BSNT_00609___ 399 ------- 399
BL01819___nin 393 GGCTTGA 399
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