Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00643 and BL01831

See Amino acid alignment / Visit BSNT_00643 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:16
# Commandline: needle
#    -asequence dna-align/BSNT_00643___yclA.1.5803.seq
#    -bsequence dna-align/BL01831___yclA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00643___yclA-BL01831___yclA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00643___yclA-BL01831___yclA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00643___yclA
# 2: BL01831___yclA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 908
# Identity:     619/908 (68.2%)
# Similarity:   619/908 (68.2%)
# Gaps:          70/908 ( 7.7%)
# Score: 1956.0
# 
#
#=======================================

BSNT_00643___      1 TTGGATATTCGCCAGCCTCGATACTTCATTACCATTGCCCAAGAACAGAA     50
                     .||||||||||||||.....|||||||.||||.||.||||..|||...||
BL01831___ycl      1 ATGGATATTCGCCAGTTAAAATACTTCGTTACAATCGCCCGGGAAGGAAA     50

BSNT_00643___     51 AATTACGTCCGCAGCCAAAAAGCTTCACATGGCGCAGCCGCCTTTAAGCA    100
                     ||||||..|.||.||.||...|||.||.||.||.||||||||..|...||
BL01831___ycl     51 AATTACAACGGCGGCGAAGCGGCTCCATATTGCACAGCCGCCGCTCTCCA    100

BSNT_00643___    101 GGCAGCTCAAACAGCTGGAGGACGAGCTTGGTGTTGTTCTGTTTGACCGG    150
                     |||||.|.||.|||.||||.||.|||||.||.||.|||.|.|||||||||
BL01831___ycl    101 GGCAGTTGAAGCAGATGGAAGAGGAGCTCGGAGTCGTTTTATTTGACCGG    150

BSNT_00643___    151 AACAAGAAAAAACAAATGACTCTTACATATGAAGGAGCTGTTTTTCTAAA    200
                     |||||.||.|||.|..||||..|.||.||.|||||||..||||||.|.||
BL01831___ycl    151 AACAAAAAGAAAAACCTGACGTTGACCTACGAAGGAGAAGTTTTTTTGAA    200

BSNT_00643___    201 AAGAGCAAAAGAGATTCTGCATAGGTTTGAAGATGCAGTCATTGAGGTAC    250
                     ||||||||||||.||.|||||.|.|.||||.|||.|..||.|.|||||.|
BL01831___ycl    201 AAGAGCAAAAGAAATCCTGCACAAGCTTGAGGATTCCATCTTGGAGGTGC    250

BSNT_00643___    251 AGGAGCTGAAGGAGGAAGTAGCCGGTACACTTGCCGTGGGATCAACGATT    300
                     .|||||||...||.|||||...|||.||.||||||||.||.||.||||||
BL01831___ycl    251 GGGAGCTGCGTGAAGAAGTCAACGGAACCCTTGCCGTCGGCTCGACGATT    300

BSNT_00643___    301 TATTGCGCGGCTCTGATGCTTGAAAAAGTAACACAGATCAAAGAGAGATA    350
                     ||.||||||||.|||.||||...||||||..|..||||||.|||.|..||
BL01831___ycl    301 TACTGCGCGGCCCTGCTGCTCTCAAAAGTCTCGAAGATCAGAGATATGTA    350

BSNT_00643___    351 CCCCCATCTCACCTTTAATATTTGGGAAAATGAGCCCGCGACACTGTTA-    399
                     .||..||.|.|..|||||.|||||||||..|||||   |..|||.|.|| 
BL01831___ycl    351 TCCGAATTTAATGTTTAACATTTGGGAAGGTGAGC---CTTCACGGCTAA    397

BSNT_00643___    400 --GAGCTGCTGGAAAGCCGGCAAATCGATGCGGCGGTCACGACAACACTG    447
                       |||||.||||||||||||||.||||||||.||.|||||||||||.|..
BL01831___ycl    398 GCGAGCTCCTGGAAAGCCGGCAGATCGATGCAGCCGTCACGACAACGCCT    447

BSNT_00643___    448 AT------CAAAAGTGACACAGTACAATTCAAGCAGCTTG-ATGACATTC    490
                     ||      |||||   ||||    |.|.||||..|||.|| ..||..|||
BL01831___ycl    448 ATCCACAGCAAAA---ACAC----CGAATCAAAAAGCCTGCCGGAGGTTC    490

BSNT_00643___    491 CATGTGTGCTCGTGCTTTCAGATGAAGCCGGATATCCGT------GC---    531
                     ||||...|||.||.|||.|||        ||| |||.||      ||   
BL01831___ycl    491 CATGCAAGCTTGTTCTTCCAG--------GGA-ATCAGTCGTATGGCTTA    531

BSNT_00643___    532 ---GGAGACACCATTAAG--ATGGAGGACATT-----CCTTCATTTCCGC    571
                        |||||..||     |  |||.|.||.|||     ||     |.||||
BL01831___ycl    532 AAAGGAGAAGCC-----GGAATGAAAGAAATTGCCGGCC-----TGCCGC    571

BSNT_00643___    572 TGATCCTGCTGCGGCCTGTC-AACGGAAAAGGCGTCTATAATCAGGTCAT    620
                     ||||.|||||..|||| ||| .||||||||||..|.||..|..|||||.|
BL01831___ycl    572 TGATTCTGCTCAGGCC-GTCGCACGGAAAAGGGATTTACGACGAGGTCGT    620

BSNT_00643___    621 GAATGAATTTC-ATCGTTTGAACCTGGAGCCGCGCATTGTTTGTGAATGC    669
                     ..||.|.|||| |||.|.|| .|||.||.|||.|..|.||||||||.|||
BL01831___ycl    621 CCATCACTTTCAATCATCTG-GCCTCGAACCGAGGGTCGTTTGTGAGTGC    669

BSNT_00643___    670 CACGACTCTGCAACTTTGCTCAGCCTCGTGTCATCCGGATTCGGCGCGTC    719
                     ||.||.|||.||||..|.|||||||||||..|.||.||||||||.|||.|
BL01831___ycl    670 CATGATTCTACAACGCTTCTCAGCCTCGTCACTTCGGGATTCGGAGCGAC    719

BSNT_00643___    720 TATTTTGC--CTGTCACAATGATTCCCGTTCATATGAGAAATCACGTTCA    767
                     .|||.|||  ||||  |.|||.|.||.|..|||.|...|...||.|||||
BL01831___ycl    720 GATTCTGCCGCTGT--CCATGCTGCCGGCGCATTTTGCACGGCATGTTCA    767

BSNT_00643___    768 CACCGTCCATATCGAAAATAATCCCTTCATTATGACA-CCGGCTGTCATG    816
                     .||..|..|.||..||||.|||||.||||||.|| || |||.|||||.|.
BL01831___ycl    768 GACATTGGAAATTCAAAACAATCCGTTCATTCTG-CAGCCGTCTGTCGTT    816

BSNT_00643___    817 TGGAGAACGGACAGTTATTTGCCTAAACC-GGCACAGCAATTTTTGGATT    865
                     |||||..|.|.|||||.|.||||.||.|| |..|.|| |||||||||.||
BL01831___ycl    817 TGGAGGGCCGGCAGTTTTCTGCCGAAGCCTGTGAGAG-AATTTTTGGCTT    865

BSNT_00643___    866 TATTTTAA    873
                     ||||||.|
BL01831___ycl    866 TATTTTGA    873


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