Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00382 and BL01842
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:02
# Commandline: needle
# -asequence dna-align/BSNT_00382.1.5803.seq
# -bsequence dna-align/BL01842___ybfB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00382-BL01842___ybfB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00382-BL01842___ybfB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00382
# 2: BL01842___ybfB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1302
# Identity: 606/1302 (46.5%)
# Similarity: 606/1302 (46.5%)
# Gaps: 486/1302 (37.3%)
# Score: 1924.0
#
#
#=======================================
BSNT_00382 1 ATGAAA---AGACTGCATTATGCGTGGATCATCGTCTCCGTCACCTTTTT 47
|||||| |.|.|.||.||.||.|||||.|||||.|..||.||.|||||
BL01842___ybf 1 ATGAAACGGAAAATACACTACGCCTGGATTATCGTTTTTGTGACGTTTTT 50
BSNT_00382 48 GA-TCTTATTGGCGGTTCAGGGGGTGCGGCTGTCGTTTGGTGCGTTTGTG 96
|| .||| |||||.|||||.||.|||||.||.||.||.||.||.|||.|.
BL01842___ybf 51 GACGCTT-TTGGCCGTTCAAGGAGTGCGCCTTTCTTTCGGAGCCTTTATT 99
BSNT_00382 97 GAGCCGTGGGAACGGCAGTTTTCAATCGATAGAAGCACCATCTCGCTGAT 146
.||||.||||||..|.|.||||||||.||.||..||||.||.|||||.||
BL01842___ybf 100 CAGCCTTGGGAAGAGGAATTTTCAATGGACAGGGGCACGATTTCGCTTAT 149
BSNT_00382 147 TTCGACGGTGAGTTTTATTGTTTATGGCATATCACAGCCTGTGATCGGTC 196
|||.|.|.||||.||.|||||.||||||.|.||.|||||.||||||||..
BL01842___ybf 150 TTCCATGCTGAGCTTCATTGTATATGGCGTGTCCCAGCCGGTGATCGGCA 199
BSNT_00382 197 GGCTTGTGGACAAATGGGGTGCCCGGGCTGTTTT-------GGCATGGAG 239
|||||||.|||...|..||..|.|||....|||| .|||
BL01842___ybf 200 GGCTTGTCGACCGCTTCGGACCGCGGATCATTTTATCCCTCAGCA----- 244
BSNT_00382 240 TGCGTTACTGACAGGAGTCAGCATTTTCTTAACATACCTTGTGACTTCGC 289
||.|.|||...||..|.|||||.||.||.|||||.||.||||||||.|
BL01842___ybf 245 --CGCTTCTGGTCGGCTTGAGCATCTTTTTTACATATCTCGTGACTTCTC 292
BSNT_00382 290 CTTGGCAGCTGTTTTTGCTTTATGGGCTGGGTGTCTCGCTTGGAGTGGGA 339
|.||||||||||||.|..|.|||||..|....||.||.||.||.||.||.
BL01842___ybf 293 CGTGGCAGCTGTTTATTTTGTATGGCATCATCGTTTCTCTCGGCGTCGGC 342
BSNT_00382 340 GGAGCGTCGAATGTGGCGGCAAGTGTATTGGTCGT---CAATTGGTTCAG 386
||.|||||||||||.|||.|.|..| ||.|||| |||||||||||.
BL01842___ybf 343 GGTGCGTCGAATGTCGCGTCGACCG---TGATCGTGACCAATTGGTTCAA 389
BSNT_00382 387 CAAAAAGCGGGGACTAGCCTTTGGGACCATGGAAGCAGGCTTTGGCGCGG 436
..|.|||||.||.||.||.||.||.|.|||||||||.||.||.||.||||
BL01842___ybf 390 TGAGAAGCGCGGGCTTGCATTCGGCATCATGGAAGCGGGATTCGGTGCGG 439
BSNT_00382 437 GGCAAATGCTTCTCGTTCCCGGCTCACTCATGTTGATCCATTGGTTTAGC 486
|.||.|||||.||.||.||.||.||.||||||.|||||||.|||||||.|
BL01842___ybf 440 GACAGATGCTGCTTGTCCCTGGATCGCTCATGATGATCCACTGGTTTAAC 489
BSNT_00382 487 TGGAAGCTGACGGTTGTGGTGTTGGGACTGCTGTTAATCTTGATTGTCTT 536
|||||..||||.||..|.||..|||||.||.|.|||..|.|.|||||.||
BL01842___ybf 490 TGGAAAGTGACCGTCATTGTTCTGGGATTGTTTTTAGCCGTTATTGTATT 539
BSNT_00382 537 TCCG-------GCTGCGCTGCTGATGCTGCGGAACAATCCTTCAGAAAAG 579
|||| .|| ||.|..||||||||.|||||||.||||||
BL01842___ybf 540 TCCGATCGTCATCT-------TGTTATTGCGGAACCATCCTTCGGAAAAG 582
BSNT_00382 580 AATACAGAGCCGATAGGCGG-ACT---GGCTGCATCAGA-AAAAGAA--- 621
|||..|.|||||||.||||| .|| |||.|| .||| |||||||
BL01842___ybf 583 AATGTACAGCCGATCGGCGGCGCTCAGGGCGGC--GAGATAAAAGAAGAG 630
BSNT_00382 622 --------ACAGCACCCAAAACAACAGCT--CTTTCAGTGGCCGGGATGT 661
.||| ||.|||| ||.| |.|.|| ..|||| |.|
BL01842___ybf 631 CCGGACGCCCAG--CCGAAAA----AGATTCCATACA-AAGCCG---TTT 670
BSNT_00382 662 TTCGGATGAGGCAA--TTCTGGTTCTTGATTTTTCCGTTTTTGATCTGTG 709
|||..|..|| || ||.||||||.|..|.||.||||||||.||.||.|
BL01842___ybf 671 TTCTCAAAAG--AACGTTTTGGTTCCTCGTCTTGCCGTTTTTCATTTGCG 718
BSNT_00382 710 GATTTACGACCGTGGGGTTGATGGATACCCATTTGATTCCGTTTTCTCAT 759
|||||||.||...||||||.||||||||||||.|.||.||.|||||.|||
BL01842___ybf 719 GATTTACAACAACGGGGTTAATGGATACCCATCTTATCCCTTTTTCGCAT 768
BSNT_00382 760 GATCATGGCTTTTC-AACGACAGTCACGAGTGCTGCTGTCAGTCTGCTGG 808
||.||.||.||||| |.||| |||.||.||.||.||||||||.|||||||
BL01842___ybf 769 GACCACGGGTTTTCGACCGA-AGTAACAAGCGCCGCTGTCAGCCTGCTGG 817
BSNT_00382 809 -CAGGCTTAATATTGCTGGCATCTTGCTGTCCGGAATTGTAG-------- 849
|.||.||||.||....|||||.|||.|.|||||..|.||.|
BL01842___ybf 818 CCGGGTTTAACATCATCGGCATTTTGATTTCCGGCGTCGTCGCTGACCGC 867
BSNT_00382 849 -------------------------------------------------- 849
BL01842___ybf 868 TGGAGCAGCCGGAAAATTTTGTGCTTTTTATATGCCGTAAGGGCGCTGTC 917
BSNT_00382 849 -------------------------------------------------- 849
BL01842___ybf 918 GCTTGTCATTCTGTTGTCGAGCCACAACTCGATGCTCCTGCTTTGCTTCG 967
BSNT_00382 849 -------------------------------------------------- 849
BL01842___ybf 968 CGGTTTTGTTCGGTTTGGTCGACTTTGCGACCGTCGCCCCGACGCAAATG 1017
BSNT_00382 849 -------------------------------------------------- 849
BL01842___ybf 1018 CTGGCAACCCAGTATTTCAGGCAGTATTCCGTCGGGTTCATTCTCGGCTG 1067
BSNT_00382 849 -------------------------------------------------- 849
BL01842___ybf 1068 GCTATTCCTCAGCCACCAGATCGGTTCGGCGCTCGGGGCTTATTTGCCGG 1117
BSNT_00382 849 -------------------------------------------------- 849
BL01842___ybf 1118 GCGTCTGGTACAGCCAAACAGGCAACTATAACCTGTCTTTCTACCTTTCA 1167
BSNT_00382 849 -------------------------------------------------- 849
BL01842___ybf 1168 ATCGTTATTTTGGCGGTAGCAAGCATTTTGAACATCCTGCTGCCGGAACC 1217
BSNT_00382 849 -------------------------------------------------- 849
BL01842___ybf 1218 TAAAAAAATAAATCCAACACTGAATCAGGAAGGGCGTTCCGTCCAGCAAT 1267
BSNT_00382 849 -- 849
BL01842___ybf 1268 AA 1269
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