Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00665 and BL01849

See Amino acid alignment / Visit BSNT_00665 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:17
# Commandline: needle
#    -asequence dna-align/BSNT_00665___yclI.1.5803.seq
#    -bsequence dna-align/BL01849___yclI.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00665___yclI-BL01849___yclI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00665___yclI-BL01849___yclI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00665___yclI
# 2: BL01849___yclI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1536
# Identity:    1031/1536 (67.1%)
# Similarity:  1031/1536 (67.1%)
# Gaps:         171/1536 (11.1%)
# Score: 3249.0
# 
#
#=======================================

BSNT_00665___      1 ATGAACTTTATCAAACGGGCCTTTTGGAATATGAAGGCTAAAAAGGGAAA     50
                     |||||.|||.|||||||.||||||||||..|||||.||.|||||.|||||
BL01849___ycl      1 ATGAATTTTTTCAAACGAGCCTTTTGGAGCATGAAAGCGAAAAAAGGAAA     50

BSNT_00665___     51 AACGTTATTGCAATTATTTGTGTTTACAGTCATATGTGTCTTTGTTCTAT    100
                     |||..|.||.|||||.|||||.||.||..|.||.||.||..|.||.||..
BL01849___ycl     51 AACACTTTTACAATTGTTTGTTTTCACGATGATTTGCGTGCTCGTGCTGA    100

BSNT_00665___    101 CAGGCCTCACCATCCAGTCGGCAGCACAAAAGTCAAGCGAACTGGCCAGA    150
                     ||||..|.||.||||||||||||||....||.||.|||||||||||.|| 
BL01849___ycl    101 CAGGAATTACGATCCAGTCGGCAGCCGTGAAATCGAGCGAACTGGCGAG-    149

BSNT_00665___    151 CAGGAA---CTCGGCGGAAGCGTGACACTTCAGGTTGACCGCCAAAAGCA    197
                       ||||   |||||.||.|||||.||.||..|.||||||.|..|||   |
BL01849___ycl    150 --GGAACAGCTCGGAGGCAGCGTCACGCTCAAAGTTGACAGGGAAA---A    194

BSNT_00665___    198 AATG--GAAA-AACAGCAGGACAGCGGTGA----AAAACGCAGCTTCAAA    240
                     ||||  |||| |||||||||||...||.||    |||    ||.||..||
BL01849___ycl    195 AATGATGAAAGAACAGCAGGACTCAGGAGACCGGAAA----AGGTTTGAA    240

BSNT_00665___    241 TCAACAC------CGATCAAAGTGTCTGATGCGAATAAGCTTGC-AGCGC    283
                     ||.||.|      |..|||||   ||   .||..|.||.||||| ||| |
BL01849___ycl    241 TCGACCCCCGTTTCTCTCAAA---TC---AGCCGAGAAACTTGCGAGC-C    283

BSNT_00665___    284 TTGACCATGTGAAGAGCTACAATTACA------CCACATCAGCTTCAGCC    327
                     ||.|||||||.||.|||||.||.|.||      |.|||||.||||.||| 
BL01849___ycl    284 TTTACCATGTCAAAAGCTATAACTTCATCTCCTCAACATCTGCTTTAGC-    332

BSNT_00665___    328 AACGCGGGA-AACTTTGATGCGATTGAAAGCTCTAGTTCAAGTGATTCCA    376
                           ||| |||||.|||.||||.||||||         .||||     
BL01849___ycl    333 ------GGACAACTTCGATCCGATCGAAAGC---------GGTGA-----    362

BSNT_00665___    377 GCTCCAGCAGTTCAA---GCTCAAAC-GCTAAAAACAGCCAAGGC-----    417
                        |.||.| |||||   .||||||| ||   .|.|||||  |||     
BL01849___ycl    363 ---CGAGGA-TTCAACGGACTCAAACAGC---GATCAGCC--GGCCGGAT    403

BSNT_00665___    418 --GGCGG------ACAAGGCGGACCGCAAATGGTTCAAGCCGATCTTTCG    459
                       |||||      |||.|||||.|.|||||||.|.||.||.||..|.||.
BL01849___ycl    404 CGGGCGGCAATGAACAGGGCGGCCGGCAAATGATGCAGGCTGACGTATCA    453

BSNT_00665___    460 ATTGAAGGTGTCATCAGCACAGCGTTAGTCGATGATTTCTCTGACGGAGA    509
                     ||.||||||||.|..||||||||..|.|||||.||.||..|.||||| ||
BL01849___ycl    454 ATCGAAGGTGTGACAAGCACAGCCCTCGTCGACGAATTTGCCGACGG-GA    502

BSNT_00665___    510 -TTCAAAAATCACAGACGGACGCGCGATTACAAA--ATCAGATGTCGGCA    556
                      .||.||.|||||.||.||.||.||..|.|||||  ||  |||||  |.|
BL01849___ycl    503 CGTCCAAGATCACGGAAGGCCGTGCTTTAACAAAGGAT--GATGT--GAA    548

BSNT_00665___    557 --AAAAAGTAACAGTGATCAACGAAACTTTAGCGGAAGAAAATGATTTGA    604
                       |||||||..|.|||||..|.|||||..|.||.||||||||.||..|||
BL01849___ycl    549 TGAAAAAGTCGCCGTGATTGAAGAAACGCTTGCCGAAGAAAACGAGCTGA    598

BSNT_00665___    605 GCGTTGGCGATTCGATCACAATTGAATC-AGCAACAGATGAAGATACGAC    653
                     ..||.||||||.||||||.|.|..||.| ||||.| |||||||||.|.||
BL01849___ycl    599 AGGTCGGCGATACGATCAAAGTCAAAGCGAGCAGC-GATGAAGATGCAAC    647

BSNT_00665___    654 GGTAAAGCTGAAGATCGTCGGTATTTATAAAACAACATCTTCAGGCGATG    703
                     |.|.||..|.||.||||||||.||.||||||||.||.||.||.||.||..
BL01849___ycl    648 GATCAATTTAAAAATCGTCGGAATCTATAAAACGACTTCATCCGGAGACA    697

BSNT_00665___    704 ACCAAGCCCAAAATTTCTCTTTCTTAAACCCTTATAACAAGCTTTATACG    753
                     |.|||||.|||||.|||.|.||.|||||||||||||||||..|.|||||.
BL01849___ycl    698 ATCAAGCGCAAAACTTCGCCTTTTTAAACCCTTATAACAAAATCTATACA    747

BSNT_00665___    754 CCTTACACAGCAACAGCGGCGCTGAAAGGCGACGACTATAAAAATACGAT    803
                     ||.||.||.||..||.||||..|.|||||||||||.|||.||||..||||
BL01849___ycl    748 CCATATACGGCGGCATCGGCCTTAAAAGGCGACGATTATCAAAACGCGAT    797

BSNT_00665___    804 TGACTCAGCTGTTTACTATATGGACGACGCGAAAAATATGGATGCTTTCG    853
                     .||...|||.||.|||.|||||||||||||....||.||.||.||||||.
BL01849___ycl    798 AGATGAAGCGGTCTACAATATGGACGACGCCTCCAACATCGACGCTTTCA    847

BSNT_00665___    854 TAAAAGCAGCGAAGAAAACATCAATAGACTTCGATACGTACACACTGAAT    903
                     |....||.||.|||||||||...||.||.||.|||||.|.||||.||.|.
BL01849___ycl    848 TTGCGGCTGCCAAGAAAACAGGCATTGATTTGGATACATTCACATTGGAC    897

BSNT_00665___    904 ACAAACGATCAGCTTTACCAGCAAATGGTCGGACCGATTGAAAATGTGGC    953
                     .|.||.||.|||.|.||||||||.||||||||.||||||||||||||.||
BL01849___ycl    898 GCCAATGACCAGTTGTACCAGCAGATGGTCGGCCCGATTGAAAATGTCGC    947

BSNT_00665___    954 TTCTTTCTCTAAAAACGTGGTGTATCTTGTATCAGTGGCAGGCGCCGTCA   1003
                     .||.|||||.|||||.||.||.||||||||..|.||.||.||.||.||.|
BL01849___ycl    948 CTCCTTCTCGAAAAATGTCGTCTATCTTGTCACGGTCGCCGGGGCGGTGA    997

BSNT_00665___   1004 TTCTTGGCCTGATTGTCATGATGTCAATCAGGGAGCGCAAATACGAAATG   1053
                     ||||.||.|||||.|||||||||||||||||||||.|.||||||||||||
BL01849___ycl    998 TTCTCGGACTGATCGTCATGATGTCAATCAGGGAGAGAAAATACGAAATG   1047

BSNT_00665___   1054 GGCGTGTTAATGGCCATCGGTGAAAAACGATGGAAATTGATTGGACAGTT   1103
                     ||.||..|.|||||.|||||.||||||||..|||||.|.||.||||||||
BL01849___ycl   1048 GGTGTTCTGATGGCGATCGGCGAAAAACGCCGGAAACTCATCGGACAGTT   1097

BSNT_00665___   1104 CTTGACTGAGATTCTGATTG-TGGCCGTTATCGCTATCGGCCTTGCATCT   1152
                     .||.||.|| |.|||.|.|| |.||.||..|.||.|||||..|..||.|.
BL01849___ycl   1098 TTTAACCGA-AATCTTAATGATCGCAGTGCTTGCCATCGGGATCTCAGCA   1146

BSNT_00665___   1153 GTGACGGGAAATCTCGTCGCAAATCAGCTTGGAAATCAGCTTTTATCCCA   1202
                     .|.||.||.|..||..|.|||||.||..|.||.||.|||||.||...|||
BL01849___ycl   1147 TTAACCGGCAGCCTGATTGCAAAGCAAATCGGGAACCAGCTCTTGAGCCA   1196

BSNT_00665___   1203 GCAAATCAGTTCATCAACCGATTCAACGCAAACC-----GCAAGCGGACA   1247
                     |||||||    .|.|||.||  |||  ||.|.||     |||.|||||..
BL01849___ycl   1197 GCAAATC----GAACAAACG--TCA--GCTAGCCAGTCTGCAGGCGGAAT   1238

BSNT_00665___   1248 AATG---CCCGGCGGCGGTGGCGGCATGGGCGG-CAAA---------ATG   1284
                     .|||   ||.||||||||.|||..|.|   ||| ||||         |.|
BL01849___ycl   1239 GATGGGCCCAGGCGGCGGAGGCTTCTT---CGGACAAAGTACTGCTCAAG   1285

BSNT_00665___   1285 T-TCGGCCACAGTTCATCAAACG-TGGACGTTATCGATTCACTGAACGTC   1332
                     | ||.||||   ||.||||   | |.|||       |||||         
BL01849___ycl   1286 TCTCAGCCA---TTGATCA---GCTCGAC-------ATTCA---------   1313

BSNT_00665___   1333 GCGGTTTCTAT---GAACGACATGCTTATT----CTGGGCGGGATCGGCA   1375
                       .||.||..|   |||       ||||.|    ||.|||||.||||||.
BL01849___ycl   1314 --AGTATCCTTCGGGAA-------CTTAATGGCACTTGGCGGAATCGGCC   1354

BSNT_00665___   1376 TCCTAATCGCAATCATTGCAACATTGCTGCCGTCAATTTCAGTACTGCGG   1425
                     |..||||.||.||..|.||.|||.|.||.|||||.||.||.||..|..||
BL01849___ycl   1355 TTTTAATTGCGATGTTCGCGACACTCCTTCCGTCCATATCTGTTTTAAGG   1404

BSNT_00665___   1426 CTTCATCCGAAAACGATATTGACAAAACAGGAATAG   1461
                     ||.||||||||||||||.||.||||||||.||||||
BL01849___ycl   1405 CTCCATCCGAAAACGATTTTAACAAAACAAGAATAG   1440


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