Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01849 and BL01875
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:21
# Commandline: needle
# -asequence dna-align/BSNT_01849.1.5803.seq
# -bsequence dna-align/BL01875___yisT.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01849-BL01875___yisT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01849-BL01875___yisT.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01849
# 2: BL01875___yisT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 666
# Identity: 329/666 (49.4%)
# Similarity: 329/666 (49.4%)
# Gaps: 231/666 (34.7%)
# Score: 772.5
#
#
#=======================================
BSNT_01849 1 TTGGGGTGTCACTCTTTTGCAATTGAAAGAGAAACAGATGAAAAAAACGA 50
BL01875___yis 0 -------------------------------------------------- 0
BSNT_01849 51 ATTTCTTAGAAAAGGGGGCATGCTGATGACTGAT---GC---AAAACAGT 94
|||||..|| || |||.||
BL01875___yis 1 -------------------------ATGACACATAGCGCATTAAAGCA-- 23
BSNT_01849 95 TTTATGACTATCATTCTTGGGC-AAACAAGAAAATATTTACCCATATCGA 143
|||| ||.|||||...|||||| ||.||| |...|..|.|||||..| ||
BL01875___yis 24 TTTA-GATTATCACAATTGGGCGAATCAA-AGGGTGCTCACCCACCT-GA 70
BSNT_01849 144 AAA-CCTGCCGGAGGAAACTGCCTATCA----AGAAGTAAAGAGCGTATT 188
||| ||||||.||.|| ||...||| .|||.|.||.|||||.||
BL01875___yis 71 AAAGCCTGCCTGAAGA----GCTGTTCACCCGGGAAATCAAAAGCGTTTT 116
BSNT_01849 189 TCCTTCTGTCAGC-GACGTGCTGCTT---CATATGTGCAGGGCTGACTAC 234
||...|||| |.| ||.|| || || |||||||||..|||||||..|
BL01875___yis 117 TCAAACTGT-ATCTGAGGT--TG-TTACCCATATGTGCGTGGCTGACGCC 162
BSNT_01849 235 ATTTGGCTGAATGTTC-TTTCGGGAGTGGCCTACCAAGAGATTATAG--- 280
.|.|||||||| |.|| |.||.||||..||.|||.|.|| |..|.||
BL01875___yis 163 TTATGGCTGAA-GATCATATCCGGAGCCGCTTACGAGGA-AGCAAAGGAA 210
BSNT_01849 281 ACAGCGCAGGCAAATTAGAGTCCGCGCAAGGTAATATGGCAGCGATTAAA 330
|||| |||.||...|.|.|| ||| |||||||
BL01875___yis 211 ACAG-GCATGCGTCTGAAAG-------AAG-------------GATTAAA 239
BSNT_01849 331 CAGCACGCTGCCGAGCTGGAGTCACAGTATC-ATGATTTC---------- 369
|||..|.|..||| ||||.|||
BL01875___yis 240 ------------------GAGGAAAAAGATCGATGACTTCATTTCCATCT 271
BSNT_01849 370 TTCA---------GCCGCCAGACGAA-----CTTAGAA-------CAGAC 398
|||| ||..|.|.|.||| .||.||| .||||
BL01875___yis 272 TTCATGACACGGCGCTTCAATATGAAGCGTTTTTTGAAAATCTTGAAGAC 321
BSNT_01849 399 C-----------TTCAC-AATGCAACATCCGAAACTAGGTACACTGGAAT 436
| .|||| |.||| .|||||.|.|.|||| .|.|||
BL01875___yis 322 CCCGATGGTGAAATCACGATTGC-CCATCCAATATTAGG-----CGAAAT 365
BSNT_01849 437 CAA----CCTAT--GCAGACACCATCCTGCAT---GTCGTCAATCACGGC 477
||| ||||| ||..| |||||.||| ||.|||||.||||||
BL01875___yis 366 CAAAACGCCTATTAGCGAA----ATCCTTCATCACGTAGTCAACCACGGC 411
BSNT_01849 478 ACTTACCACAGAGGGAACGTAACCGCCATGCTGAGACAGCTGGGCCATTC 527
|||||.||||||||.||..|..|.||.|||||||||||..||||..|..|
BL01875___yis 412 ACTTATCACAGAGGCAATATTTCAGCGATGCTGAGACAAATGGGTGAAGC 461
BSNT_01849 528 AGGCGTACCTACTGATTATATGTACTATTTATATGAG--------AAAAG 569
.||.||.||.||.||.|||||.||.||||||| |.|| |||.|
BL01875___yis 462 GGGTGTGCCAACGGACTATATTTATTATTTAT-TAAGCCTGAAGCAAACG 510
BSNT_01849 570 AGAAAGCAAGGGCTAA 585
|.| |||
BL01875___yis 511 ACA----------TAA 516
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