Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02953 and BL01876

See Amino acid alignment / Visit BSNT_02953 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:38
# Commandline: needle
#    -asequence dna-align/BSNT_02953.1.5803.seq
#    -bsequence dna-align/BL01876.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02953-BL01876.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02953-BL01876.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02953
# 2: BL01876
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 548
# Identity:     292/548 (53.3%)
# Similarity:   292/548 (53.3%)
# Gaps:         181/548 (33.0%)
# Score: 721.5
# 
#
#=======================================

BSNT_02953         1 ATGAAACAT-----ATCATTGCGCTTGCTTCAAAGATTGCTTTCACT---     42
                     |||||.|||     |.|||||    ||.||.|||       ||||.|   
BL01876            1 ATGAAGCATGTAAGAGCATTG----TGTTTAAAA-------TTCATTGTG     39

BSNT_02953        43 ---CTCGCCCTTTTATATGTG-------------ATTTTGGACAGAGTCT     76
                        ||.|.|||||||||||||             .||||||         
BL01876           40 AGCCTTGTCCTTTTATATGTGGTCCTAACTCTGTTTTTTGG---------     80

BSNT_02953        77 ATCACGCATCCTTC--TTAAGTGTGATGTTT--------ATTGCACTTTT    116
                              |.|||  ||..|||..||||||        ||||    |||
BL01876           81 ---------CGTTCCATTCGGTGAAATGTTTGTTTTGACATTG----TTT    117

BSNT_02953       117 CTTAGGTTTTG-TTTCCTATCTTTCTGGT--GACATGCTCGTCT--TACC    161
                     ||  ||.|.|| |.|||||    ||||||  ||.||..||..||  |.||
BL01876          118 CT--GGGTGTGATATCCTA----TCTGGTCGGAGATCTTCTGCTGCTGCC    161

BSNT_02953       162 CAGAACAAACAATATTACAGCTTCATTGGCTGACTTTGGCCTTTCATTCG    211
                     .|||||||||||||..||.||..||.|||..||.||||||||||||.|||
BL01876          162 GAGAACAAACAATACAACCGCGACAATGGGAGATTTTGGCCTTTCACTCG    211

BSNT_02953       212 TTATT-CTTTGGGT-ATT-------TGTTTTAACCCAAACAA--------    244
                      |||| .||||||| |||       ||       |.|||.||        
BL01876          212 -TATTGATTTGGGTGATTCTCGCCATG-------CAAAATAATCCCCCGT    253

BSNT_02953       245 --GAAACGATTTCTCACCATTTGGAGCAGCT---CTCCTTTCCG----CT    285
                       |..|||.||.||           ||||||   .||.|.||.|    |.
BL01876          254 ATGGTACGCTTGCT-----------GCAGCTTCAATCGTGTCAGCGATCG    292

BSNT_02953       286 GCCTGTCTTACTGTTTTTGAATTCTTTTTTCATCGGTATTTATTGAA--A    333
                     ||  |||  ||.||.||.||||..|||||.||.||.||  |||.|||  .
BL01876          293 GC--GTC--ACAGTGTTCGAATATTTTTTCCACCGCTA--TATGGAAGCC    336

BSNT_02953       334 AATGTACTTG-ATGAAAATTTCCGAAATGAACTGTCAGCG-------AGA    375
                     ||.|| |||| |.||||    |.|||   |||.|..|.||       |||
BL01876          337 AACGT-CTTGAACGAAA----CAGAA---AACGGAAAACGGGAAAACAGA    378

BSNT_02953       376 GATAA--------CACGTTGCAGTATCAAACGGAAGCCGCGGACGAGCTG    417
                     ||.||        ||  |||||||||||||..|||.|..|.||.|||||.
BL01876          379 GAAAAGCCTGGTTCA--TTGCAGTATCAAAGCGAATCATCAGAGGAGCTT    426

BSNT_02953       418 TTTCCCG--------------AAACGAATGA-GAAGCATAAAGAATAG    450
                     |.|||.|              ||||  |.|| ||||.||||       
BL01876          427 TATCCGGTTACCCACTCTAAAAAAC--AGGACGAAGAATAA-------    465


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