Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03450 and BL01880

See Amino acid alignment / Visit BSNT_03450 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:26
# Commandline: needle
#    -asequence dna-align/BSNT_03450___spmA.1.5803.seq
#    -bsequence dna-align/BL01880___spmA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03450___spmA-BL01880___spmA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03450___spmA-BL01880___spmA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03450___spmA
# 2: BL01880___spmA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 593
# Identity:     451/593 (76.1%)
# Similarity:   451/593 (76.1%)
# Gaps:           7/593 ( 1.2%)
# Score: 1664.0
# 
#
#=======================================

BSNT_03450___      1 ATGGTCAATATAATTTGGGTCAGTTTAACCGTGATCGGACTCGTTTTTGC     50
                     ||||||||||||||.||||||.|.|||||.||||||||.||.||.|||||
BL01880___spm      1 ATGGTCAATATAATCTGGGTCGGCTTAACGGTGATCGGTCTGGTGTTTGC     50

BSNT_03450___     51 GATGTGCAACGGAACTCTGCAAGATGTAAATGAAGCCGTGTTTAAGGGTG    100
                     |.|.|.|||||||||..|.||.||.||.||||||||.||.|||||.||..
BL01880___spm     51 GCTTTTCAACGGAACGGTTCAGGAAGTTAATGAAGCTGTATTTAAAGGAT    100

BSNT_03450___    101 CGAAAGAAGCGATTACGATT-TCATTTGGATTGATGAGCGTGCTTGTTTT    149
                     ||||.|||||..|.|||||| |.| |.|||.||||||||||.||||||||
BL01880___spm    101 CGAAGGAAGCCGTCACGATTGTGA-TCGGACTGATGAGCGTCCTTGTTTT    149

BSNT_03450___    150 CTGGCTTGGCTTAATGAAAATCGCCGAGCAGTCAGGTCTTTTGGATATTT    199
                     .|||||.||..|.|||||||||||.||.|||||.||.|||.|.||.|..|
BL01880___spm    150 TTGGCTGGGGCTGATGAAAATCGCTGAACAGTCCGGGCTTCTCGAAAAAT    199

BSNT_03450___    200 TCAGCCGGATGTGCAGGCCTTTTATATCTAAACTGTTCCCTGATATACCG    249
                     |||||.||.|||||.||||.||.||.||.||.|||||.||.||.||.||.
BL01880___spm    200 TCAGCAGGCTGTGCCGGCCGTTCATTTCAAAGCTGTTTCCCGAGATCCCT    249

BSNT_03450___    250 CCGGATCACCCGGCGATGGGCTATATTTTATCTAATCTTATGGCGAATTT    299
                     ||||||||.|||||||||||.|||||||||||.|||.|.|||||.||.||
BL01880___spm    250 CCGGATCATCCGGCGATGGGATATATTTTATCCAATTTAATGGCCAACTT    299

BSNT_03450___    300 CTTCGGCCTCGGAAATGCAGCAACTCCGCTTGGCATTAAAGCAATGGAAC    349
                     .|||||..|.||.||||||||.||.|||||.||.||||||||.|||||||
BL01880___spm    300 TTTCGGATTGGGCAATGCAGCGACACCGCTCGGTATTAAAGCGATGGAAC    349

BSNT_03450___    350 AAATGAAAAAGCTGAACGGAAACCGATCGGAAGCAAGCCGGTCAATGATT    399
                     |.|||||...|||.|||.|.|||||...||||||.|||||.||||||||.
BL01880___spm    350 AGATGAAGGCGCTCAACCGGAACCGCAGGGAAGCGAGCCGCTCAATGATC    399

BSNT_03450___    400 ACTTTTTTAGCTGTTAATACGTCCTGCATCACACTCATCCCGACAACGGT    449
                     ||.|||.|.||.||.||||||||..||||.||..|.||.|||||.||.||
BL01880___spm    400 ACCTTTCTGGCGGTCAATACGTCAAGCATTACCTTGATTCCGACGACCGT    449

BSNT_03450___    450 GATCGCTGTCCGAATGGCTTATTCCTCCAAA-ACGCCGACAGATATCGTC    498
                     .|||||.|||.|.|||.|.|| |..|.|||| .||||||||||.||||||
BL01880___spm    450 CATCGCGGTCAGGATGACATA-TGATGCAAAGGCGCCGACAGACATCGTC    498

BSNT_03450___    499 GGGCCAAGCATTTTGGCAACGCTTATTTCCGGAATCGGTGCCATTATCAT    548
                     ||.||.|.|||||||||.||..|.||.||.||.|||..|||.||..||||
BL01880___spm    499 GGTCCGACCATTTTGGCGACTTTAATATCGGGGATCTTTGCGATCTTCAT    548

BSNT_03450___    549 TGATCGGTATTTTTATTACCGCCGCAAAAAGAAGGGAAGGTGA    591
                     .||.||.||.||||||||..|..|.||||||||||   |||||
BL01880___spm    549 CGACCGATACTTTTATTATAGAAGAAAAAAGAAGG---GGTGA    588


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