Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03455 and BL01885

See Amino acid alignment / Visit BSNT_03455 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:26
# Commandline: needle
#    -asequence dna-align/BSNT_03455___ypuH.1.5803.seq
#    -bsequence dna-align/BL01885___scpB.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03455___ypuH-BL01885___scpB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03455___ypuH-BL01885___scpB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03455___ypuH
# 2: BL01885___scpB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 606
# Identity:     456/606 (75.2%)
# Similarity:   456/606 (75.2%)
# Gaps:          24/606 ( 4.0%)
# Score: 1669.0
# 
#
#=======================================

BSNT_03455___      1 ATGGGGCTTGATATCGTGAATTGGAAAGCTATTGTGGAAGCCCTTCTTTA     50
                     |||..||||||||||||||||||||||||.|||||.|||||.|||.|.||
BL01885___scp      1 ATGACGCTTGATATCGTGAATTGGAAAGCCATTGTCGAAGCGCTTTTGTA     50

BSNT_03455___     51 TGCGGCAGGCGATGAAGGGCTTACAAAAAAGCAGCTGTTAACAGTGCTTG    100
                     |||.||.|||||.||.||.||.||||||||.|||||.|||.|.||..|.|
BL01885___scp     51 TGCCGCCGGCGACGAGGGCCTGACAAAAAAACAGCTATTATCCGTTTTGG    100

BSNT_03455___    101 AAATCGAAG-AGCCTGAACTGAACACG--ATCATGGCGGATGTGGCGGAC    147
                     |..||||.| |||| ||.|||  |..|  ||.|||...|||||   ..|.
BL01885___scp    101 AGGTCGATGAAGCC-GAGCTG--CTGGATATTATGCTTGATGT---CAAA    144

BSNT_03455___    148 GAATACC-------GCGAAGATACACGAGGGATTGAACTTATTGAGTATG    190
                     ||| |||       ..|||||.|   |.||.||.||.|||.|.|||||||
BL01885___scp    145 GAA-ACCTATGAAAAAGAAGACA---GGGGCATCGAGCTTGTCGAGTATG    190

BSNT_03455___    191 CAGATACGTACATGCTCTCTACCAAAAAAGACTTTGCGCC--TTACTTGA    238
                     |.||||||||||||||.||.|||||||||||.||  ||||  .||.||||
BL01885___scp    191 CGGATACGTACATGCTTTCGACCAAAAAAGAATT--CGCCGTCTATTTGA    238

BSNT_03455___    239 AAAAACTGATTGAAGTGCCGTCAAAGGGCCTTTCTCAAGCATCTTTAGAA    288
                     ||||.|||||.||||..||.|||||.||.||||||||.||..|..|.||.
BL01885___scp    239 AAAAGCTGATCGAAGCCCCTTCAAAAGGGCTTTCTCAGGCTGCGCTCGAG    288

BSNT_03455___    289 GTACTGGCCATTGTTTCATACAAACAGCCAATTACGAGAGCAGAAATTGA    338
                     ||..|||||||.||.||.||.||.|||||.||.||||||||.|||.||||
BL01885___scp    289 GTTTTGGCCATCGTCTCTTATAAGCAGCCGATCACGAGAGCGGAAGTTGA    338

BSNT_03455___    339 AGAAATCAGAGGAGTAAAATCAGAGCGGATTTTACACAGTCTTGTCGCGA    388
                     .||.||||||||.||.|||||.||.||||||.|.||.||.||.|||||.|
BL01885___scp    339 GGAGATCAGAGGGGTCAAATCTGAACGGATTCTTCAGAGCCTGGTCGCAA    388

BSNT_03455___    389 AGGCGCTATTGTGTGAAGTAGGGCGTGCCGATGGTCCGGGGCGGGCCATT    438
                     |.|||||.||.||.|||||.||.||.||.|||||.|||||..||||.||.
BL01885___scp    389 AAGCGCTGTTATGCGAAGTCGGACGGGCGGATGGACCGGGCAGGGCGATC    438

BSNT_03455___    439 TTATACGGTACTACGCCGACTTTTCTTGAACAATTCGGTCTGAAAACGCT    488
                     ||.||||||||.||....||.|||||.|||||||||||..|.||||||||
BL01885___scp    439 TTGTACGGTACAACAGAAACATTTCTGGAACAATTCGGCTTAAAAACGCT    488

BSNT_03455___    489 GGACGAGCTTCCGCCGCTGCCTGAAAATGCGGAAGAAGACGTTCTTCAAG    538
                     .||.|||||||||||||||||.|||||||..||||||||||...||||.|
BL01885___scp    489 TGAAGAGCTTCCGCCGCTGCCCGAAAATGTAGAAGAAGACGGGGTTCAGG    538

BSNT_03455___    539 AAGAAGCAGATTTATTTTTTGAAAACTTTAACCAAACCTTCGAAGATATA    588
                     |||||||.|||.|.||.||.||||||||||||||.||.|||||||||.||
BL01885___scp    539 AAGAAGCCGATCTGTTCTTCGAAAACTTTAACCAGACGTTCGAAGATTTA    588

BSNT_03455___    589 AAATAG    594
                     ||||||
BL01885___scp    589 AAATAG    594


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