Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03462 and BL01889
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:27
# Commandline: needle
# -asequence dna-align/BSNT_03462___ribA.1.5803.seq
# -bsequence dna-align/BL01889___ribA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03462___ribA-BL01889___ribA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03462___ribA-BL01889___ribA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03462___ribA
# 2: BL01889___ribA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1223
# Identity: 893/1223 (73.0%)
# Similarity: 893/1223 (73.0%)
# Gaps: 52/1223 ( 4.3%)
# Score: 3146.5
#
#
#=======================================
BSNT_03462___ 1 GTGTTTCATCCGATAGAAGAAGCACTGGA----CGCTTTAAAAAAAGGCG 46
.|||||||..|.||.|||||||| || ||.|||.||..|.||..
BL01889___rib 1 ATGTTTCACACAATTGAAGAAGC----GATTCGCGATTTGAAGCAGGGAA 46
BSNT_03462___ 47 AAGTCATCATCGTTGTAGATGATGAAGACAGAGAAAATGAAGGAGACTTT 96
|||||||||||||.||.|||||.||..||||.|||||.|||||.||.||.
BL01889___rib 47 AAGTCATCATCGTAGTCGATGACGAGAACAGGGAAAACGAAGGCGATTTC 96
BSNT_03462___ 97 GTGGCTCTTGCCGAGCATGCAACGCCGGAAGTCATTAACTTTATGGCGAC 146
||.||.||.||.||..|.|||||.||.||.||.||.|||||||||||..|
BL01889___rib 97 GTTGCGCTGGCGGAATACGCAACACCCGATGTAATCAACTTTATGGCTTC 146
BSNT_03462___ 147 ACATGGGAGAGGACTGATCTGCACGCCGCTCAGTGAGGAAATCGCAGACA 196
.||.||.||.||..||||||||.|||||||||.|||.||.|||||...|.
BL01889___rib 147 GCACGGAAGGGGGTTGATCTGCGCGCCGCTCAATGAAGAGATCGCTTCCC 196
BSNT_03462___ 197 GGCTTGATCTTCACCCTATGGTGGAGCATAATACAGATTCTCACCACACT 246
|||||||.||.||.||.||||||||..|.|||||.||||||||||||||.
BL01889___rib 197 GGCTTGAGCTCCAACCGATGGTGGACGAAAATACCGATTCTCACCACACA 246
BSNT_03462___ 247 GCATTTACCGTAAGCATAGACCATCGTGAAACGAAGACAGGTATCAGCGC 296
||||||||.||.||..|.||.||.||.||.||.|||||.||.||.|||||
BL01889___rib 247 GCATTTACGGTCAGTGTCGATCACCGCGATACAAAGACGGGGATTAGCGC 296
BSNT_03462___ 297 TCAAGAAAGATCTTTTACCGT----TCAAGC--ATTGCTGGACA-GCACA 339
|||.||..|.||..|.||||| || || ||.||||..|| ||.||
BL01889___rib 297 TCAGGAGCGGTCGCTGACCGTCATGTC--GCTGATCGCTGATCACGCGCA 344
BSNT_03462___ 340 TCCGTGCCATCTGATTTTCAGCGTCCGGGGCACATTTTTCCACTGATTGC 389
||||.| |||||||.|..|.||||||||||||||.||.|||||.||
BL01889___rib 345 TCCGGG-----TGATTTTAAAAGGCCGGGGCACATTTTCCCCCTGATCGC 389
BSNT_03462___ 390 GAAAAAAGGAGGTGTCCTGAAAAGAGCGGGCCATACAGAAGCTGCTGTTG 439
|||||||||.||.||..|.||||||||.||.|||||.||.||.||.||||
BL01889___rib 390 GAAAAAAGGCGGCGTTTTAAAAAGAGCCGGACATACGGAGGCGGCCGTTG 439
BSNT_03462___ 440 ATCTTGCTGAAGCTTGCGGATCTCCAGGAGCCGGCGTCATTTGTGAAATT 489
|.|||||.|||||.|||||.||..|....|||||||||||.||.|||||.
BL01889___rib 440 ACCTTGCAGAAGCGTGCGGGTCCGCGCCGGCCGGCGTCATCTGCGAAATC 489
BSNT_03462___ 490 ATGAATGAAGACGGAACGATGGCGAGAGTGCCTGAGCTCATTGAAATTGC 539
||||||||||||||.||||||||.||.||||||||.|||| |||
BL01889___rib 490 ATGAATGAAGACGGCACGATGGCAAGGGTGCCTGAACTCA---AAA---- 532
BSNT_03462___ 540 GAAAAAGC--ATCA------ATTAAAAATGATCACCATTAAGGATTTGAT 581
|||.||| |||| .||.|||||||||||.|||||.||||||||
BL01889___rib 533 -AAATAGCCGATCAGCACGGCTTGAAAATGATCACGATTAAAGATTTGAT 581
BSNT_03462___ 582 TCAATACCGTTACAATCTGACAACACTTGTCGAGCGTGAAGTTGACATTA 631
..|||||||.||||....|..|||.||..||.|.||.|||||..|.||||
BL01889___rib 582 CGAATACCGCTACAGCAAGGGAACGCTGATCAACCGGGAAGTGAAAATTA 631
BSNT_03462___ 632 CGCTGCCTACTGATTTTGGGACATTTAAGGTTTATGGATACACAAATGAG 681
||||||||.|.||.||.||.||.||.||||||||.||.||.|||||.||.
BL01889___rib 632 CGCTGCCTTCCGAATTCGGTACCTTCAAGGTTTACGGCTATACAAACGAA 681
BSNT_03462___ 682 GTAGATGGAAAAGAGCATGTCGCATTTGTGATGGGAGAGGTGCCGTTCGG 731
.|.||||..|||||.|||.|.|||.|.||.|..||.||..|.||.|||||
BL01889___rib 682 ATCGATGACAAAGAACATATAGCACTCGTCAAAGGCGACATACCTTTCGG 731
BSNT_03462___ 732 AGAAGAACCGGTATTGGTCCGGGTGCATTCAGAATGTCTCACAGGTGACG 781
.||.||.||.||..|.||||||||.||.||||||||.||.||.||.||.|
BL01889___rib 732 TGACGAGCCTGTGCTTGTCCGGGTACACTCAGAATGCCTGACGGGCGATG 781
BSNT_03462___ 782 TGTTTGGGTCTCATCGCTGTGACTGCGGACCGCAGC-TGCACGCCGCGCT 830
|.||.||.|||.|.|||||.||||||||.||||||| ||| |||.|||||
BL01889___rib 782 TTTTCGGCTCTTACCGCTGCGACTGCGGCCCGCAGCTTGC-CGCTGCGCT 830
BSNT_03462___ 831 GAACCAAATTGCCGCAGAA---GGCCGTGGAGTGCTTCTGTACTTGCGCC 877
....||||| ||.|.|| |||||.||.||.||.|||||.|||.|.|
BL01889___rib 831 CGCGCAAAT---CGAACAAGCGGGCCGGGGCGTACTCCTGTATTTGAGAC 877
BSNT_03462___ 878 AAGAAGGACGAGGCATCGGTTTAATCAATAAATTAAAAGCTTATAAGCTT 927
|.||||||.|.||.|||||.||||||||||||.|.||||||||||||||.
BL01889___rib 878 AGGAAGGAAGGGGAATCGGCTTAATCAATAAACTGAAAGCTTATAAGCTG 927
BSNT_03462___ 928 CAGGAACAAGGTTATGACACCGTAGAAGCCAATGAGGCGCTTGG-ATTCT 976
||||||.||||.||.|||||||||.|.||.||.||...|||.|| .||||
BL01889___rib 928 CAGGAAGAAGGATACGACACCGTACAGGCTAACGAAAAGCTCGGTTTTCT 977
BSNT_03462___ 977 TGCCGGATCTTCGCAACTATGGCATCGGAGCACAAATTTTACGCGACCTC 1026
| ||.||.|||||||||||.||.|||||.||.|||||.|||.|.||||||
BL01889___rib 978 T-CCAGACCTTCGCAACTACGGGATCGGCGCCCAAATCTTAAGGGACCTC 1026
BSNT_03462___ 1027 GGTGTCCGGAATATGAAGCTTTTGACGAATAATCCGCGAAAAATCGCAGG 1076
||.||...|.|.||||||||.||.|||||.||.|||||||||||.|||||
BL01889___rib 1027 GGCGTGAAGCAAATGAAGCTGTTAACGAACAACCCGCGAAAAATTGCAGG 1076
BSNT_03462___ 1077 CCTTGAAGGCTACGGACTCAGTATTTCAGAAAGAGTGCCGCTTCAAATGG 1126
.||.|||||.|||||.||.|..||..||||.||.||||||||.||.||||
BL01889___rib 1077 TCTCGAAGGTTACGGCCTGACGATCGCAGACAGGGTGCCGCTGCAGATGG 1126
BSNT_03462___ 1127 AGGCGAAAGAACACAATAAAAAATATTTGCAAACCAAAATGAA--CAAGC 1174
||.|.|||.||.|.|||.||||.|||.|..||||.|||| || .||..
BL01889___rib 1127 AGACAAAAAAAGATAATGAAAAGTATCTAAAAACGAAAA--AATCAAAAT 1174
BSNT_03462___ 1175 TAGGTCATTTACTTCATTTCTAA 1197
|.||.|||.|.||||||||.|||
BL01889___rib 1175 TGGGGCATATGCTTCATTTTTAA 1197
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