Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05003 and BL01898
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:12
# Commandline: needle
# -asequence dna-align/BSNT_05003___yvgY.1.5803.seq
# -bsequence dna-align/BL01898___copZ.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05003___yvgY-BL01898___copZ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05003___yvgY-BL01898___copZ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05003___yvgY
# 2: BL01898___copZ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 214
# Identity: 152/214 (71.0%)
# Similarity: 152/214 (71.0%)
# Gaps: 8/214 ( 3.7%)
# Score: 521.0
#
#
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BSNT_05003___ 1 ATGGAACAAAAAACATTGCAAGTTGAAGGAATGTCTTGTCAGCACTGCGT 50
|||||||||||||||.||.||||.|||||.||||||||..|.|||||.||
BL01898___cop 1 ATGGAACAAAAAACACTGAAAGTCGAAGGCATGTCTTGCAACCACTGTGT 50
BSNT_05003___ 51 CAAAGCAGTAGAAACAAGCGTAGGAGAACTGGACGGCGTCAGTG----CC 96
..|.|||||||||..||.|||.|||.|.||.|.||| |||| |.
BL01898___cop 51 TCAGGCAGTAGAAGGAAACGTCGGAAAGCTTGGCGG----AGTGGAGTCT 96
BSNT_05003___ 97 GTTCATGTCAATCTGGAAGCGGGTAAAGTCGATGTTTCGTTTGATGCTGA 146
||..|.||.|||.|..|.|.|||.||||||||.||.|||||||||.|.|.
BL01898___cop 97 GTCAAAGTGAATTTAAACGAGGGCAAAGTCGAAGTATCGTTTGATTCAGG 146
BSNT_05003___ 147 CAAAGTATCAGTCAAAGATATTGCGGATGCGATAGAAGATCAGGGCTATG 196
||||||.||..|.||.||.||....|||.||||.|||||.|||||.||||
BL01898___cop 147 CAAAGTCTCGCTGAAGGAGATCATCGATACGATCGAAGACCAGGGGTATG 196
BSNT_05003___ 197 ACGTAGCTGAGTGA 210
|.||.||.|..|||
BL01898___cop 197 ATGTTGCAGGCTGA 210
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