Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05002 and BL01899
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:12
# Commandline: needle
# -asequence dna-align/BSNT_05002___yvgX.1.5803.seq
# -bsequence dna-align/BL01899___copA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05002___yvgX-BL01899___copA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05002___yvgX-BL01899___copA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05002___yvgX
# 2: BL01899___copA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2574
# Identity: 1697/2574 (65.9%)
# Similarity: 1697/2574 (65.9%)
# Gaps: 297/2574 (11.5%)
# Score: 5323.0
#
#
#=======================================
BSNT_05002___ 1 ATGTTGAGTGAACAAAAGGAAATCGCGATGCAGGTCTCTGGTATGACCTG 50
||| || .|.||||||.|||..|.|..|.||..|||||||.||||||||
BL01899___cop 1 ATG--GA-CGGACAAAAAGAAGCCACCCTCCAAATCTCTGGCATGACCTG 47
BSNT_05002___ 51 TGCGGCATGTGCTGCCAGAATTGAAAAAGGCCTGAAGCGGATGCCCGGTG 100
.||.||.|||||.||..|.||.||.|||||..||||..||.|...|||.|
BL01899___cop 48 CGCCGCCTGTGCGGCGCGGATCGAGAAAGGGTTGAAAAGGCTTGACGGCG 97
BSNT_05002___ 101 -TCACGGATGCAAATGTTAATCTGGCAACGGAAACATCAAATGTAATC-- 147
||| |||.||||||||.||..||||...|||||.|||||| ||||
BL01899___cop 98 TTCA-GGACGCAAATGTGAACTTGGCGCTGGAAAAATCAAA---AATCGT 143
BSNT_05002___ 148 -TACGATCCTGCTGAAACAG-----GGACTGCAGCGATTCAAGAAAAAAT 191
||.|||||.|...|||..| ||||.||.| |.| ||.|||.|
BL01899___cop 144 TTATGATCCGGGGCAAATCGAAGTCGGACAGCTG-GCT----GAGAAAGT 188
BSNT_05002___ 192 AGAAAAGCTGGGCTATCACGTTGTTACAGAAAAAGCTGAATTCGATATTG 241
.|||..|||.||||||||.|||..|.|.||||||||.|||||.|...||.
BL01899___cop 189 CGAATCGCTCGGCTATCAAGTTCCTGCGGAAAAAGCCGAATTTGCGGTTT 238
BSNT_05002___ 242 AAGGCATGACCTGTGCGGCTTGCGCCAATCGGATTGAAAAACGGCTTAAC 291
..||||||||.|||||||||||||||||.|||.|||||||.||.||.|||
BL01899___cop 239 CCGGCATGACGTGTGCGGCTTGCGCCAACCGGGTTGAAAAGCGCCTCAAC 288
BSNT_05002___ 292 AAAATAGAAGGCGTCGCAAATGCAC--CAGTAAACTTCGCTTTAGAAACA 339
||..|....||||| ||||.||.| |.||.|||||.||..|.||.||.
BL01899___cop 289 AAGCTGTCTGGCGT--CAAAAGCGCCGCCGTCAACTTTGCCATTGAGACT 336
BSNT_05002___ 340 GTTACGGTCGAATACAATCCAAAAGAAGCGTCTGTCGGC----GATTTGA 385
|..||.|||||.||..||.| .|..||| .|.|||.| ||..|||
BL01899___cop 337 GCGACAGTCGACTATCATGC---TGGCGCG-GTTTCGCCGGAGGAGATGA 382
BSNT_05002___ 386 AAGAAGCGGTAGATAAGCTTGGATATAAGCTAAAGTTG----AAGGGGGA 431
..|||||.||.||.|||||.||.||.|||||..||.|| |||...||
BL01899___cop 383 TCGAAGCCGTTGAAAAGCTCGGCTACAAGCTCGAGCTGAAAAAAGACCGA 432
BSNT_05002___ 432 AC--AGGACAGTGAGGCTGCTGCTGCTAA-AAAGAAAGAAGAACGGA--- 475
|| .||||.||..|||.| || |||| ||||.|| ||
BL01899___cop 433 ACTGCGGACGGTCGGGCGG--------AACAAAG--AGAAAAA--GATAT 470
BSNT_05002___ 476 --AG---CAAACAGCGAGACTGATTTTTTCAGCTGTCCTGTCATTTCCAT 520
|| |||||.|..|.|.|.|||||||||||..|..||||.|||||..
BL01899___cop 471 TCAGCGTCAAACCGGCAAATTTATTTTTTCAGCCATTTTGTCTTTTCCGC 520
BSNT_05002___ 521 TGCTTTGGGCGATGGTGAGCCATTTTACATTTACATCATTCATTTGGGTA 570
||||.|||||.|||||.||||||||.|.|||.||.|||||.||.|||.|.
BL01899___cop 521 TGCTCTGGGCAATGGTCAGCCATTTCAAATTCACGTCATTTATATGGCTG 570
BSNT_05002___ 571 CCCGATATATTTCTCAATCCGTGGATGCAATTTGCGCTGGCGACACCAGT 620
||.|..||.||..|..||||.|||.|.||.||.|||.||||.|||||.||
BL01899___cop 571 CCGGGGATGTTCATGGATCCCTGGGTTCAGTTCGCGTTGGCCACACCGGT 620
BSNT_05002___ 621 CCAATTTCTGATCGGCTGGCCGTTTTA-TGTGGGTGCGTATAAGGCGCTC 669
.||.|||.|..||||...||.|||||| ..|||| ||.|||||.|||||.
BL01899___cop 621 TCAGTTTATCGTCGGGAAGCAGTTTTACACTGGG-GCTTATAAAGCGCTG 669
BSNT_05002___ 670 AGAAATAAAAGCGCCAATATGGATGTATTGGTCGCCCTCGGTACGACGGC 719
.|.||.|||||.|||||.||||||||..|||||||.|||||.|||.|.||
BL01899___cop 670 CGGAACAAAAGTGCCAACATGGATGTGCTGGTCGCTCTCGGCACGTCTGC 719
BSNT_05002___ 720 TGCTTACGCTTATAGTCTT-TATCTTACTTTTCAAAGTCTTGGATCTCAC 768
.||.||....||.|| ||| |||.|.|...||.||||.||.||..|..||
BL01899___cop 720 CGCCTATTTCTACAG-CTTGTATTTAAGCATTGAAAGCCTCGGTACAAAC 768
BSNT_05002___ 769 GGGCATACAGACGGCCTTTACTATGAAACAAGCGCGATTTTGCTGACGCT 818
.|||||.|.||||||||||||||||||||||||||.||..|..|.||..|
BL01899___cop 769 CGGCATCCGGACGGCCTTTACTATGAAACAAGCGCCATCCTCTTAACTTT 818
BSNT_05002___ 819 GATTTTATTAGGCAAGTTGTTTGAAACAAAAGCAAAAGGCCGTTCCTCGG 868
|||..|.|||||.|||.||||||||.|.|||||.|||||.|||||.||.|
BL01899___cop 819 GATCATTTTAGGAAAGCTGTTTGAAGCGAAAGCGAAAGGGCGTTCATCCG 868
BSNT_05002___ 869 ATGCGATTAAAAAGCTGATGAAGCTTCAAGCGAAAACAGCGACTGTTGTA 918
|.|||||.||||||||||||..|||.||.||.||.||||||||.||.||.
BL01899___cop 869 AAGCGATCAAAAAGCTGATGGGGCTGCAGGCAAAGACAGCGACCGTCGTC 918
BSNT_05002___ 919 AGAGACGGACAGGAGCAAATCATCCCGATCGATGAAGT--------GCTT 960
||..||||..|.|||...|.|.|.|||||.||..|.|| ||
BL01899___cop 919 AGGAACGGCGAAGAGATGACCGTGCCGATTGAAAACGTTTTGGCAGGC-- 966
BSNT_05002___ 961 GTTAATGACATTGTTTACGTCAAACCCGGCGAACGAATTCCTGTCGACGG 1010
|||||..|.||.||.||.|||||.|||..|.|.||.|..|||||
BL01899___cop 967 ------GACATCATGTATGTGAAGCCCGGTGAAAAAGTACCGGCAGACGG 1010
BSNT_05002___ 1011 AGAAGTGGTTGAAGGCCGTTCAGCGGTTGACGAATCGATGATTACAGGAG 1060
.||..|.||.|||||.|||||||||.|.||.|||||||||||.||.||.|
BL01899___cop 1011 GGAGATTGTCGAAGGTCGTTCAGCGCTGGATGAATCGATGATCACCGGTG 1060
BSNT_05002___ 1061 AAAGTCTTCCTGTTGACAAAA---------ATCCTGGTGA-CAGCGTGAC 1100
||||..|.||||||||||||| |||| |||.| |.|||..||
BL01899___cop 1061 AAAGCATCCCTGTTGACAAAACGGTTGGAGATCC-GGTTATCGGCGCTAC 1109
BSNT_05002___ 1101 AGGTTCAACCGTTAACGCAAACGGCTTTCTGAAAATTAAAGCTGTCAACG 1150
| .|||| ||| |||.||.|||.|.|||.|.|.|||.|..||.|
BL01899___cop 1110 A--ATCAA----TAA---AAATGGATTTTTAAAAGTCAGAGCAGAAAAAG 1150
BSNT_05002___ 1151 TCGGAAAGGATACTGCGCTTTCTCATATCATCAAAATTGTTGAGGAAGCA 1200
|.||.||.|||||||||||..|.||.||.||.|||.||||.||.||.||.
BL01899___cop 1151 TAGGCAAAGATACTGCGCTGGCGCAGATTATAAAAGTTGTGGAAGAGGCG 1200
BSNT_05002___ 1201 CAAGGGTCAAAAGCGCCGATCCAGCGTCTCGCTGACCAGATTTCAGGCAT 1250
|||||.|||||.||||||||.||.||.|||||.||||.||||||.||..|
BL01899___cop 1201 CAAGGTTCAAAGGCGCCGATTCAACGGCTCGCAGACCGGATTTCCGGGGT 1250
BSNT_05002___ 1251 TTTTGTACCCATTGTATTGGGGATTGCCGTTCTCACTTTTCTCATTTGGT 1300
||||||.||.|||||..|||.|||.||.|...||||.|||.||||.||||
BL01899___cop 1251 TTTTGTGCCGATTGTCGTGGCGATCGCGGCCATCACATTTTTCATCTGGT 1300
BSNT_05002___ 1301 ACCTTTGGGCGGCT----CCTGGCGATTT--------TGCTGAAGCGATC 1338
| ||.||||| | ||.|||||.|| .||||.||
BL01899___cop 1301 A---TTTGGCGG-TCAGCCCCGGCGAATTCGGCACGGCGCTGGAG----- 1341
BSNT_05002___ 1339 AGCAAGTTCATTGCGGTTCTTGTCATTGCCTGTCCTTGCGCCCTCGGTCT 1388
|||.|.||||||||.|||||.||.||.|||||.||.||.||||| ||
BL01899___cop 1342 ---AAGCTGATTGCGGTGCTTGTGATCGCATGTCCGTGTGCGCTCGG-CT 1387
BSNT_05002___ 1389 T-GCCACTCCGACGAGC-ATAATGGCTGGATCTGGACGCGCTGCTGAATT 1436
| ||.||.||||| |.| ||.|||||.||||||||.|||||.||||||||
BL01899___cop 1388 TGGCAACGCCGAC-ATCGATCATGGCCGGATCTGGCCGCGCGGCTGAATT 1436
BSNT_05002___ 1437 CGGGATTTTATTTAAAGGCGGCGAGCATTTAGAAAAAACACATCGTCTCG 1486
|||.||.|||||.|||||||||||.|||||.||.|...|.||.||..|.|
BL01899___cop 1437 CGGAATCTTATTCAAAGGCGGCGAACATTTGGAGACGGCTCACCGCTTGG 1486
BSNT_05002___ 1487 ATACCATTGTTCTTGATAAAACCGGAACCGTGACAAACGGGAAGCCGCGT 1536
|.||.||.||.|||||.||.||.||.||.||.|||||.||||||||.|..
BL01899___cop 1487 AGACGATCGTGCTTGACAAGACGGGGACGGTCACAAATGGGAAGCCTCAG 1536
BSNT_05002___ 1537 CTGACAGATGCCATTCCATTCGGCCATTTTGAA------------GAAAA 1574
|||||||||| |.||.|| |||| ||||.
BL01899___cop 1537 CTGACAGATG--------TGCGCCC----TGAACCATGGATCGATGAAAC 1574
BSNT_05002___ 1575 AGATTTGCTTCAATTTGC--AGCG--GCAGCGGAAACGGGATCAGAGCAT 1620
|...||.| |||| || |.|| ||.||.||||...|.||.||.||.
BL01899___cop 1575 ATCGTTTC-TCAA---GCTTATCGGTGCTGCAGAAAAAAGCTCTGAACAC 1620
BSNT_05002___ 1621 CCGCTTGGCGAAGCGATTATTGCTGGCGTGAAAGATAAAGGGCTTGAGAT 1670
|||||||..|||||.|||.|.|..|||.|.|||||.||||||.|.||
BL01899___cop 1621 CCGCTTGCTGAAGCCATTGTCGAAGGCATCAAAGAGAAAGGGATAGA--- 1667
BSNT_05002___ 1671 ACCGAAACTTACCC-------------GCTTTGAAGCAAAAGTCGGCGCA 1707
|||| ||||||||||.|.|..||||...
BL01899___cop 1668 ----------ACCCGCCTCAGCAGACAGCTTTGAAGCGATACCCGGCTAT 1707
BSNT_05002___ 1708 GGCATTTTGGCTGAAGCCGGAG-----GAAAAAGC--ATTCTCGTCGGCA 1750
||.|| .|||||||.|| | |||||| |||.|..||||.|
BL01899___cop 1708 GGTAT------CGAAGCCGCAGTCAATG-AAAAGCGGATTTTGATCGGTA 1750
BSNT_05002___ 1751 CAAGAAAATTAATGGAGA---GCGA-----ACAGGTTGAGCATGGGGCTC 1792
|||||....|.|||||.| |.|| ||| ||.|..|||.|
BL01899___cop 1751 CAAGACGTCTGATGGAAAACCGTGATATTGACA--TTCAAGATGCG---- 1794
BSNT_05002___ 1793 TTCTCGCCCAAATGGAAGAGCTAGAGGCCGAAGGGAAAACAGTTATGCTT 1842
..||.|.|||||||||||||.||..|..||||.||.||.|..||||||
BL01899___cop 1795 --AACGGCGAAATGGAAGAGCTCGAAACACAAGGAAAGACGGCGATGCTT 1842
BSNT_05002___ 1843 GTATCCATTGATGGAGAAGC----AGCGGGGCTAGTAGCAGTTGCAGATA 1888
|...||.|.||.|| .| .||.|||||..|.||.||.||.||||
BL01899___cop 1843 GCCGCCGTCGACGG----TCGGTTTGCCGGGCTGATCGCCGTCGCCGATA 1888
BSNT_05002___ 1889 CGATTAAGGATACGTCGCGGAAGGCTGTTGCCCGT-------CTGAAAGA 1931
|||||||.||.||||| ||||||.| |.|| |||.|.||
BL01899___cop 1889 CGATTAAAGACACGTC---GAAGGCAG----CGGTGAAAAGGCTGCATGA 1931
BSNT_05002___ 1932 GTTGGGTCTTGATGTCATCATGATGACAGGAGACAATCGCAGAACCGCAG 1981
..||||.||.||.|||.|||||||.||.||.||||||||..|.||.||||
BL01899___cop 1932 TATGGGGCTGGAAGTCGTCATGATCACCGGGGACAATCGGCGGACGGCAG 1981
BSNT_05002___ 1982 AAGCCATTGCGAAGGAAGCGGGAATT----GCGAATATCATTGCGGAAGT 2027
||||.|||||....|||||.||.||| .|| ||||.||.|||||
BL01899___cop 1982 AAGCGATTGCTGCTGAAGCCGGCATTCACCACG----TCATCGCCGAAGT 2027
BSNT_05002___ 2028 CCTTCCTGAACAAAAAGCGG---------CGGAAATCGCCCGCTTGCAA- 2067
.||.||.|||..|||||||| .|.||||| |..||||
BL01899___cop 2028 TCTGCCGGAAGGAAAAGCGGATGAGGTGAAGAAAATC-----CAGGCAAA 2072
BSNT_05002___ 2068 ----AAAGAAGGCCGCCAGACAGCAATGGTAGGCGACGGAATTAACGATG 2113
|||.|||.| ||.|||||.||||||||.||.|||||||
BL01899___cop 2073 AGGCAAAAAAGTC---------GCGATGGTCGGCGACGGCATCAACGATG 2113
BSNT_05002___ 2114 CGCCGGCGCTTGCCACAGCTGACATCGGCATGGCGATTGGAACTGGCACG 2163
|||||||..|.||..|.||.||.|..||.||||||||.|||||.||.||.
BL01899___cop 2114 CGCCGGCATTGGCGGCGGCCGATACAGGTATGGCGATCGGAACAGGGACT 2163
BSNT_05002___ 2164 GACATTGCCATGGAAACAGCAGACATTACACTGATTCGCGGCGATCTAAA 2213
|||.|.|||||||||.|.||.|||.|.||..||||.|||||||||.||||
BL01899___cop 2164 GACGTCGCCATGGAAGCCGCCGACGTCACCTTGATCCGCGGCGATTTAAA 2213
BSNT_05002___ 2214 CAGCATTGCAGACGCAATCCGCATGAGTAGATTGACAATGAAAAACATTA 2263
||||||.||.||.||.||||.||||||.||||||||.||.||||||||||
BL01899___cop 2214 CAGCATCGCCGATGCGATCCTCATGAGCAGATTGACCATCAAAAACATTA 2263
BSNT_05002___ 2264 AACAAAA-CTTATTCTGGGCGCTTGGCTATAACAGCCTCGGCATCCCAAT 2312
||||||| ||| |||||||||.|||.|||.||||||.|||||||.||..|
BL01899___cop 2264 AACAAAATCTT-TTCTGGGCGTTTGCCTACAACAGCATCGGCATTCCGTT 2312
BSNT_05002___ 2313 CGCAGCACTTGGATTTTTAGCACCGTGGATAGCAGGAGCAGCAATGGCAT 2362
|||.||..|.||..||||.||.||||||||.|||||.||.||.|||||.|
BL01899___cop 2313 CGCGGCTGTCGGGCTTTTGGCTCCGTGGATCGCAGGTGCCGCGATGGCGT 2362
BSNT_05002___ 2363 TCAGCTCCGTTTCCGTTGTTCTGAATGCTCTTCGCCTGCAAAAAGTAAA- 2411
||||.||.||.||.||.|||||||||||.||..|.||||||||.||.||
BL01899___cop 2363 TCAGTTCGGTCTCAGTCGTTCTGAATGCACTCAGGCTGCAAAAGGTGAAG 2412
BSNT_05002___ 2412 -ATGA------------------- 2415
.|||
BL01899___cop 2413 CTTGATTGGAGGAATCCGTCTTGA 2436
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