Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01367 and BL02000

See Amino acid alignment / Visit BSNT_01367 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:54
# Commandline: needle
#    -asequence dna-align/BSNT_01367___yfiC.1.5803.seq
#    -bsequence dna-align/BL02000___yfiC.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01367___yfiC-BL02000___yfiC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01367___yfiC-BL02000___yfiC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01367___yfiC
# 2: BL02000___yfiC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2131
# Identity:    1125/2131 (52.8%)
# Similarity:  1125/2131 (52.8%)
# Gaps:         623/2131 (29.2%)
# Score: 2438.0
# 
#
#=======================================

BSNT_01367___      1 ATG------CTA--AAAGACATCCGCAAGCCTTTCCAATATCCCAA---A     39
                     |||      |.|  |||| |||   ||.|.||   |.||| |||||   |
BL02000___yfi      1 ATGAGCCAACAACCAAAG-CAT---CACGGCT---CTATA-CCCAAAGGA     42

BSNT_01367___     40 CTGC-CAATTGACAAAAAAGAAGGAGCGAAAAAGCGGGCGAAAGCAAAGG     88
                     .||| |||  |||||||                    .||||||   |..
BL02000___yfi     43 ATGCACAA--GACAAAA--------------------CCGAAAG---AAT     67

BSNT_01367___     89 ATACAAAGGGCACAC---TGAGACGAATCTGGTCTTACTTGGC-------    128
                     .||.||||   ||.|   |||||               |||||       
BL02000___yfi     68 TTAAAAAG---ACCCTTTTGAGA---------------TTGGCCCGCTAT     99

BSNT_01367___    129 -TGAAAGAAAA----GGAC-----------TGCTCGTACTTGTCAT-GCT    161
                      |     ||||    ||||           ||||||   |||||.| |||
BL02000___yfi    100 TT-----AAAACCGCGGACCTTCCAGCTGGTGCTCG---TTGTCTTCGCT    141

BSNT_01367___    162 G-----ATGG------------TTGTCATCAGCGCGA---TATTCGGG--    189
                     |     .|||            .|||||||||..|.|   |..|||||  
BL02000___yfi    142 GCAATATTGGCGACATTATTTAATGTCATCAGTCCAAAACTTCTCGGGGA    191

BSNT_01367___    190 ------CTCCTTGGCCCCTTTGTGATCGGA----------AAGGCCATTG    223
                           |||.|    ||||||    |||.|          |||||     
BL02000___yfi    192 CGCGACCTCTT----CCCTTT----TCGCAAGCTTTAAAGAAGGC-----    228

BSNT_01367___    224 ACC--------AT-----TTTATCGTCGGGAAAACGGTCAGC--GGCTTG    258
                     |||        ||     |||.|||.|.|||..|||.|.|.|  |||..|
BL02000___yfi    229 ACCGGTGTTCAATTCGGCTTTCTCGGCCGGATCACGCTGATCCTGGCAGG    278

BSNT_01367___    259 ATTCCCGT-TTTGCTTCTTCTGCTCGCTATCTATA---TCATTCAG---T    301
                     |||   || |.||||  ||||    |||.|.|.||   ||.|.|||   |
BL02000___yfi    279 ATT---GTATCTGCT--TTCT----GCTTTGTTTACGTTCTTGCAGCATT    319

BSNT_01367___    302 CCCTG-TCGCTTTGGTTTC----AAAACTATTGGATGAT-TACGATCT-C    344
                     .|||| |.||...|||..|    |||||        ||| |||||..| |
BL02000___yfi    320 ACCTGATGGCCGGGGTAGCCCAGAAAAC--------GATATACGAAATGC    361

BSNT_01367___    345 GCAGGGCACGGTTTTCAGAATGAGAAGCGAATTGTTCACCCATCTGCATG    394
                     ||..||.|  ||     ||||||.||||                    ||
BL02000___yfi    362 GCCAGGAA--GT-----GAATGAAAAGC--------------------TG    384

BSNT_01367___    395 A-GCTGCCGATTCCATTT-------TTTGATAAACAGCGGCACGGCGAGC    436
                     | ||.||    |||.|||       |.|||.||.||...|||||||||..
BL02000___yfi    385 ACGCGGC----TCCCTTTAAAGTACTATGACAAGCATTCGCACGGCGACA    430

BSNT_01367___    437 TGATGAGCCGGGTGACG--AATGACATCGAAAATGTCAGTTCTACCTTAA    484
                     .|.|.||||  |.|.||  |||||.|||||.|||.||            |
BL02000___yfi    431 CGCTCAGCC--GCGCCGTCAATGATATCGACAATATC------------A    466

BSNT_01367___    485 ACACGTCAGTCATTCAAATTTTG--TCAAGCG----------TGATCACC    522
                     |.||||||            |||  .||.|||          ||||.||.
BL02000___yfi    467 ATACGTCA------------TTGCAGCAGGCGCTGACGCAAATGATTACG    504

BSNT_01367___    523 TTTGCCGGGACGATTG-CGG-----------TGATGCTGTACATGAGCC-    559
                     |.||.|...||.||.| |||           |||||||.|..||.|||| 
BL02000___yfi    505 TCTGTCATTACAATAGTCGGAATCATCGTCATGATGCTTTTGATCAGCCC    554

BSNT_01367___    560 --------CGCTC-----CTTACAT--TGATTACGCTGACCATTATTCCG    594
                             |||||     ||| |||  .|.|..||||.|.||        
BL02000___yfi    555 TGTGCTGACGCTCGTCGTCTT-CATCACGGTCCCGCTCAGCA--------    595

BSNT_01367___    595 GTGATGGCAG--CGA------GCCT----------GAAATGGATCAC--C    624
                      ||.||||.|  |||      ||||          ||||     |||  |
BL02000___yfi    596 -TGCTGGCCGTCCGATTCATTGCCTCATTTTCGCAGAAA-----CACTTC    639

BSNT_01367___    625 AACCGAACGGGAAAGCTGTTTAAAGAACAGCAGAAAAACCTAGGTGATCT    674
                      .|||  ||                  |||||.|||.|.||.||.||..|
BL02000___yfi    640 -GCCG--CG------------------CAGCAAAAAGAACTCGGCGACAT    668

BSNT_01367___    675 GAATGGGTATATTGAGGAATCTGTTTCAGGCGCAAAGGTCA-----TCAA    719
                     .||.||..|..||||.||| .|||||..||.|||    |||     |.||
BL02000___yfi    669 CAACGGACACGTTGAAGAA-ATGTTTACGGGGCA----TCAGGAAGTAAA    713

BSNT_01367___    720 AGCATATTC--ACGTG----AGAAGCAGATTACTGCTGAATTTCTCGAAA    763
                     .||  ||||  .|.||    |.|||| |||| |.||  ||||....|||.
BL02000___yfi    714 GGC--ATTCGGGCATGAAGAAAAAGC-GATT-CAGC--AATTCGATGAAG    757

BSNT_01367___    764 AAAACG-----CTGCACTCAAGACGTCGGGCTTTTGG---GCGCAGACGA    805
                     .|||.|     ||..|| ||    |||.|||   |||   ||||||...|
BL02000___yfi    758 TAAATGAGCGTCTTTAC-CA----GTCAGGC---TGGAAAGCGCAGTTTA    799

BSNT_01367___    806 TTTCCGG---GTTTATCCCGAAGGTCATGA-ACTCTTTGAAT----AACT    847
                     |||||||   |.|.||.||||   |.|||| |.||     ||    |||.
BL02000___yfi    800 TTTCCGGTCTGATGATGCCGA---TGATGACATTC-----ATCGGCAACC    841

BSNT_01367___    848 TAAGCTTTACAATGATTG-CGGC--AATCGGCGGTTTGTTTGCGCTGAAA    894
                     |..|||.|   .||.||| |.||  ||.|||||||.|.||.|..||.||.
BL02000___yfi    842 TCGGCTAT---GTGTTTGTCAGCATAACCGGCGGTATTTTCGTTCTTAAC    888

BSNT_01367___    895 GGCTGGATCTCGATCGGCTCCATCGTCGT-----CTTTGCCGAGTATTCA    939
                     |||....|.|.||||||      .|.|||     ||||      |||.||
BL02000___yfi    889 GGCACCCTTTTGATCGG------AGGCGTGCAGGCTTT------TATCCA    926

BSNT_01367___    940 AGA-------CAATTT----ACACGCCCTTTAAACGATCTGGCCAACCAG    978
                     |.|       ||||||    |..|||.|.||   |.|.|||     ||.|
BL02000___yfi    927 ATATACGCAGCAATTTTCCCAGCCGCTCGTT---CAAGCTG-----CCGG    968

BSNT_01367___    979 TTT----AATACGATGCTGTCCGCAATTGCCGGCGCTGAACGGGTGTTTG   1024
                     ..|    |||||.||.|..||.|||||.||...|||.|||.|||||||  
BL02000___yfi    969 AATCGCGAATACAATCCAATCGGCAATCGCATCCGCCGAAAGGGTGTT--   1016

BSNT_01367___   1025 CCGTGCTT---GATGAAAAAGAAGAGCGCGATGATGAAAAGAACGCCGTG   1071
                     |.|| |||   ||.|||.|||||||...||..||       .|||||| |
BL02000___yfi   1017 CAGT-CTTTTGGACGAAGAAGAAGAAACCGGGGA-------GACGCCG-G   1057

BSNT_01367___   1072 CATCAGCCCATCCAAACAGGCAGCATTGAATTCAGG-GATGTTT------   1114
                     |.|    |||||.|.||.|||| .|||.||   ||| |||||.|      
BL02000___yfi   1058 CTT----CCATCGATACCGGCA-AATTAAA---AGGCGATGTATCGTTTG   1099

BSNT_01367___   1115 ---------CCTTCGGTTACGATAAA--------GGGCAGCAGACACTGA   1147
                              ||||||||||.||||||        ||.||.|.|..|||.|
BL02000___yfi   1100 AACATGTCGCCTTCGGTTATGATAAAAACGTTCCGGTCATCCGCGACTTA   1149

BSNT_01367___   1148 AGCATTTACAGTTCACCGTGCC--TGCGGGGCAGTCCATCGCGTTTGTCG   1195
                     |||.||.||          |||  .|..||.|||.|.||.|||.|.||||
BL02000___yfi   1150 AGCCTTCAC----------GCCAAAGAAGGCCAGACGATTGCGATCGTCG   1189

BSNT_01367___   1196 GACCGACGGGGGCGGGGAAGACAACCGTCACTAACCTTCTCGCCCGTTTT   1245
                     |||||||.||.||.||.||.||.||..|||..||..|.||....||||||
BL02000___yfi   1190 GACCGACCGGCGCTGGAAAAACGACGATCATCAATTTGCTGATGCGTTTT   1239

BSNT_01367___   1246 TACGAGCCTGACGAAGGAAAAATTTTAA--TCGACGGTACAGATATTA--   1291
                     ||.||.|...||.||||.|..|  |.||  |||.|||.||||||||.|  
BL02000___yfi   1240 TATGAACTAAACAAAGGCAGCA--TCAAGGTCGGCGGCACAGATATCAGC   1287

BSNT_01367___   1292 AAACCCTTACTAGAGCAAGCCTGAGAAAAAACATG---GGGTTTGTTCTT   1338
                     .|.|..|..|..||.||.||  |||   ||.||||   |.|.|.||..|.
BL02000___yfi   1288 GAGCTGTCGCGCGAACAGGC--GAG---AAGCATGTTTGCGATGGTGTTA   1332

BSNT_01367___   1339 CAGGATTCTTTCTTATTTCAGGGAACGATCAGAGAAAACATTCGC-TACG   1387
                     |||||..|.|...|.||..|.||.||.|||.|.||||||| |||| ||||
BL02000___yfi   1333 CAGGACACATGGCTGTTCAACGGCACCATCCGGGAAAACA-TCGCTTACG   1381

BSNT_01367___   1388 GCAGGCTTGATGCTTCTGATCAGGAAGTCGAAGCC---------GCTGCA   1428
                        |||.|||.|...| ||.|  |||   ||||.|         ||.|||
BL02000___yfi   1382 ---GGCGTGAAGGCGC-GACC--GAA---GAAGACATCATCAGAGCGGCA   1422

BSNT_01367___   1429 AAAACAGCGAATGCCCATAGTTTTATTGAAAGGC----TGCCAAAAGGGT   1474
                     |||...||..|||||.|...||||||    ..||    ||||..|.||.|
BL02000___yfi   1423 AAAGGCGCCTATGCCGACGATTTTAT----CCGCACCTTGCCGGACGGCT   1468

BSNT_01367___   1475 ATGACACCGTGCT-------GA--CGCAAAACGGTTCGGGCATCAGTCAG   1515
                     ||||.||.||.||       ||  |.||||||...|||     ||   ||
BL02000___yfi   1469 ATGATACGGTACTTGGCGAAGATGCCCAAAACATCTCG-----CA---AG   1510

BSNT_01367___   1516 GG--ACAGAAGCAGTTGATTTCTATAGCGAGGGCGGTGCTTGCCGATCCG   1563
                     ||  ||.|.|||..||.|   |.||.|||||.||..|..|.||.||||||
BL02000___yfi   1511 GGCAACGGCAGCTCTTAA---CGATCGCGAGAGCCATTTTAGCTGATCCG   1557

BSNT_01367___   1564 GTTCTTCTCATTTTGGATGAAGCGACAAGCAACATTGATACCGTTACAGA   1613
                     ....||.|.||.||.||||||||||||||||...|.||.|||...||.||
BL02000___yfi   1558 AAGATTTTAATATTAGATGAAGCGACAAGCAGTGTCGACACCCGGACGGA   1607

BSNT_01367___   1614 AGTCAACATTCAAGAAGCGCTTGCCCGTTTAATG--------GAAGG--A   1653
                     |.|.||.||||||.|||||            |||        ||.||  |
BL02000___yfi   1608 AATGAATATTCAAAAAGCG------------ATGAACAAACTGATGGCCA   1645

BSNT_01367___   1654 A--GAACAAGCGTCATCATTGCCCACAGGCTGAACACCATTCAAAGA-GC   1700
                     |  |.||.|||.|..|.||.||||||.|.||....|||||| ||||| ||
BL02000___yfi   1646 ACCGTACGAGCTTTGTTATCGCCCACCGTCTTTCTACCATT-AAAGATGC   1694

BSNT_01367___   1701 GGACCAGATTGTGGTGCTAAAAGACGGTGAAATGATTGAAAAAGGCAGCC   1750
                     .|||..||||.|.|||.|.|||.||||.||.||.||||||||||||||||
BL02000___yfi   1695 CGACATGATTCTTGTGATGAAAAACGGAGATATTATTGAAAAAGGCAGCC   1744

BSNT_01367___   1751 ATGACGAGCTGATTCAGCAA-AAAGGATTTTACAGTGACTTATATGAAAG   1799
                     |.||.|||||| .||.|||| ||.||||||||....||.||.|||.|.||
BL02000___yfi   1745 ACGAAGAGCTG-CTCCGCAAGAACGGATTTTATGCCGATTTGTATAACAG   1793

BSNT_01367___   1800 CCAATT----TGAGAAATAG-----------   1815
                     |||.||    .|.|||..||           
BL02000___yfi   1794 CCAGTTCTCCCGGGAAGAAGCCGTCAGCTAA   1824


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