Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03958 and BL02019
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:59
# Commandline: needle
# -asequence dna-align/BSNT_03958___yrhA.1.5803.seq
# -bsequence dna-align/BL02019___yrhA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03958___yrhA-BL02019___yrhA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03958___yrhA-BL02019___yrhA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03958___yrhA
# 2: BL02019___yrhA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 946
# Identity: 683/946 (72.2%)
# Similarity: 683/946 (72.2%)
# Gaps: 44/946 ( 4.7%)
# Score: 2403.0
#
#
#=======================================
BSNT_03958___ 1 ATGACAGTGATTACGGACATTACCGAGCTGATTGGGAATACACCGCTTCT 50
||||..|||||.|.|||.||.|||||..||||.||.||.||.|||||||
BL02019___yrh 1 ATGAATGTGATCAAGGATATCACCGAATTGATCGGCAAAACGCCGCTTC- 49
BSNT_03958___ 51 CCGCTTGAAGAACTTTGATGTT------CCAGAAGGAGTCGCGGTGTATG 94
||.|||..||.|||.|| ||..||||.||.....|.||||
BL02019___yrh 50 -----TGCAGATTTTGGATTTTCGAATCCCTAAAGGCGTTAACATATATG 94
BSNT_03958___ 95 CCAAGCTTGAAATGATGAATCCAGGGGGAAGCATCAAAGACAGACTGGGA 144
|.||.|||||||||||||||||.||.||.|||||.||||||.|.||.|||
BL02019___yrh 95 CAAAACTTGAAATGATGAATCCGGGAGGCAGCATTAAAGACCGGCTCGGA 144
BSNT_03958___ 145 GATATGCTGATTCGTGACGCGCTCGATTCAGGCAAGGTAAAACCTGGCGG 194
||..||||||||..|||.|||.|||.|||.||.|||.|.|||||.||.||
BL02019___yrh 145 GAAGTGCTGATTGCTGAAGCGATCGGTTCGGGAAAGCTGAAACCCGGTGG 194
BSNT_03958___ 195 AGTGATTATAGAAGCTACGGCAGGCAATACAGGGATCGGCCTTGCGCTGA 244
|..|.|.||.||.||.||.|||||||||||.||.|||||.||.||.||..
BL02019___yrh 195 AACGGTCATTGAGGCAACAGCAGGCAATACGGGAATCGGTCTGGCTCTCG 244
BSNT_03958___ 245 GTGCCAGAAAATATGGGCTGAAAGCGA----TTTTCTGTGTCCCTGAACA 290
..|||||||| |..|.|.|..||| ||||.||.||.||.||.||
BL02019___yrh 245 CCGCCAGAAA----GCACGGCATTCGACCCGTTTTTTGCGTACCCGAGCA 290
BSNT_03958___ 291 TTTCAGCAGAGAGAAACAGCAAATTATGCAAGCGCTTGGCGCATC-AATC 339
||||||||..||.||||||...||||||.|||||||.||||| || .||.
BL02019___yrh 291 TTTCAGCATGGAAAAACAGTCGATTATGAAAGCGCTCGGCGC-TCGGATA 339
BSNT_03958___ 340 ATTCATACACCGCGTCAA--GACGGAATGCAGGGCGCCATTCAAAAAGCC 387
.|||||||.||..| || |.|||.|||.||||.||.|||.|||||||.
BL02019___yrh 340 GTTCATACCCCCAG--AAGTGCCGGGATGAAGGGTGCGATTGAAAAAGCA 387
BSNT_03958___ 388 ATTCAGCTGGAGTCTGAAATTGAAAATTCTTATTGCGTTTTGCAATTTAA 437
.||.|.||.|||...||.|||....|||||||||||||||||||.|||||
BL02019___yrh 388 CTTGAACTTGAGAAGGAGATTCCCGATTCTTATTGCGTTTTGCAGTTTAA 437
BSNT_03958___ 438 AAACCGAGTAAATCCATCGACTTACTATAAGACGCTTGGGCCTGAAATGT 487
|||||.|||||||||||.|.||||||||||.|||.|||..||.|||||.|
BL02019___yrh 438 AAACCCAGTAAATCCATTGGCTTACTATAAAACGATTGCCCCGGAAATAT 487
BSNT_03958___ 488 GGGAAGCGCTTGATGGGAATATTCATACATTTGTCGCAGGGGCAGGATCA 537
||.|.|..||||..||....|||.|....||.|||||.||.||.||.|||
BL02019___yrh 488 GGAATGATCTTGGCGGCCGGATTGACGTCTTCGTCGCCGGAGCGGGGTCA 537
BSNT_03958___ 538 GGGGGCACGTTCGCAGGAAC-----AGCTTCCTTCTTAAAAGAAAAAAAT 582
||.|||||.||.||.||||| ||.||| |.||||||||||||
BL02019___yrh 538 GGCGGCACATTTGCGGGAACCGCCAAGTTTC-----TGAAAGAAAAAAAT 582
BSNT_03958___ 583 CCAGCAGTC----AAAACGGTGATTGTTGAACCGGAGGGCTCGATTTTAA 628
|| ||| ||||||||.||||||||||||||.|||||||||||||
BL02019___yrh 583 CC----GTCCATTAAAACGGTTATTGTTGAACCGGAAGGCTCGATTTTAA 628
BSNT_03958___ 629 ACGGAGGAGAGCCTCACGCTCATAAAACAGAGGGCATCGGAATGGAGTTT 678
|||||||.||.||.||.|..|||||.||.||.||.|||||||||||.||.
BL02019___yrh 629 ACGGAGGGGAACCGCATGGGCATAAGACCGAAGGAATCGGAATGGAATTC 678
BSNT_03958___ 679 ATCCCCGATTATATGAATAAGAGCCACTTTGATAAGATCTACACCGTAAC 728
|||||.||.||.|||.|..|.|||.|.||.|||.||||.|||||.||...
BL02019___yrh 679 ATCCCGGAATACATGGAGGAAAGCTATTTCGATGAGATTTACACAGTGCT 728
BSNT_03958___ 729 GGATGAGAATGCGTTTAGACTTGTGAAAGAAGCGGCAGAAAAAGAAGGCC 778
.||.||..||||||||.||||.||.||||||||.||.|||||.|||||.|
BL02019___yrh 729 TGACGAAGATGCGTTTCGACTCGTAAAAGAAGCCGCGGAAAAGGAAGGGC 778
BSNT_03958___ 779 TGCTGATCGGAAGCTCTTCAGGTGCAGCGCTTTATGCAGCATTGGAGGAA 828
|.|||||.||||||||.|||||.||.|||.|.|.|||.||||||.|.|||
BL02019___yrh 779 TTCTGATTGGAAGCTCATCAGGCGCCGCGTTGTTTGCCGCATTGAAAGAA 828
BSNT_03958___ 829 GCGAAAAAAGCATCGGCGGGAACTAACATTGTCACAGTATTTCCTGACAG 878
||..|||||||....||.||.||.||||||||.||..|.|||||.|||||
BL02019___yrh 829 GCCGAAAAAGCGAAAGCCGGCACAAACATTGTGACGATTTTTCCCGACAG 878
BSNT_03958___ 879 CAGCGATCGATATATCAGCAAACAAATATACGAAGGAGGCATCTGA 924
||||||.||.|||.|.||||||.||||.|||||||||||.||.|||
BL02019___yrh 879 CAGCGACCGCTATTTAAGCAAAAAAATTTACGAAGGAGGAATATGA 924
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