Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03959 and BL02020

See Amino acid alignment / Visit BSNT_03959 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:59
# Commandline: needle
#    -asequence dna-align/BSNT_03959___mtn.1.5803.seq
#    -bsequence dna-align/BL02020___mtn.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03959___mtn-BL02020___mtn.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03959___mtn-BL02020___mtn.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03959___mtn
# 2: BL02020___mtn
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 730
# Identity:     503/730 (68.9%)
# Similarity:   503/730 (68.9%)
# Gaps:          92/730 (12.6%)
# Score: 1779.5
# 
#
#=======================================

BSNT_03959___      1 ------------------------ATGGAAGAGGAAGTTACCATCTTAAG     26
                                             ||||||||.|||||.||.||.||..|
BL02020___mtn      1 ATGAAAATCGCAGTTATCGGAGCAATGGAAGAAGAAGTCACGATTTTGCG     50

BSNT_03959___     27 AGACAAACTTGAAAATGCAAAAACAGAAACG-------ATCGCACACTGT     69
                     |..||||||.|||.|..|       |||.||       ||||||.|||||
BL02020___mtn     51 AAGCAAACTCGAACAGAC-------GAACCGGGAAGTCATCGCAAACTGT     93

BSNT_03959___     70 GAATTTACAACAGGCGAATATGAAGGAACTGAAGTGATTCTTTTAAAATC    119
                     ||||||||.|..||....||||||||||..||.||..|.||||||||.||
BL02020___mtn     94 GAATTTACCAGCGGGTTTTATGAAGGAAAAGAGGTCGTGCTTTTAAAGTC    143

BSNT_03959___    120 AGGAATTGGAAAAGTAAATGCTGCTATCAGCACGACGCTTCTGCTTGACC    169
                     .||.||.||.|||||.|||||.||.||.|||||||||.||||||||||||
BL02020___mtn    144 CGGCATCGGCAAAGTCAATGCAGCCATGAGCACGACGATTCTGCTTGACC    193

BSNT_03959___    170 GTTACAAGCCTGATTATGTCATTAACACAGGCTCAGCCGGCGGATTTCAT    219
                     |.|..||.||.||...||||||.|||||.||.|||||||||||.||||||
BL02020___mtn    194 GCTTTAAACCGGACGTTGTCATCAACACCGGATCAGCCGGCGGCTTTCAT    243

BSNT_03959___    220 CATACATTGAATGTAGGGGATGTCGTCATTTCCACTGACGTTCGCCACCA    269
                     |||.|..|.|||||.||.|||.|||||||.||.||.||.||.|||||.||
BL02020___mtn    244 CATTCGCTTAATGTCGGAGATATCGTCATCTCGACCGAAGTCCGCCATCA    293

BSNT_03959___    270 TGATGTAGACGTAACGGCTTTTGACTATGAATACGGCCAAGTGCCGGGTC    319
                     .|||||.||.||.|||||.|||||.||||||||.||.||.||.|||..||
BL02020___mtn    294 CGATGTCGATGTCACGGCATTTGATTATGAATATGGACAGGTTCCGAATC    343

BSNT_03959___    320 TTCCGGCTGCTTATGCGGCGGATGAAAAGCTGATCA--GCAT-----CA-    361
                     |.||||||||           ||..|||||.|| ||  ||||     || 
BL02020___mtn    344 TGCCGGCTGC-----------ATACAAAGCCGA-CAATGCATTGATCCAA    381

BSNT_03959___    362 ----CTGAA---GAAGCGGTATCTGAACTCGACGG--CATTCAGGTTGCA    402
                         |.|||   ||||||   ||||||||.|  ||  |||||||||||..
BL02020___mtn    382 GCGGCGGAAGACGAAGCG---TCTGAACTGG--GGCACATTCAGGTTGTC    426

BSNT_03959___    403 AAAGGAACGATTGCAACAGGCGATTCTTTCATGAACGATCCGAAGCGGGT    452
                     |||||||||||.||||||||||||||.||.||||.||||||..|.||.||
BL02020___mtn    427 AAAGGAACGATAGCAACAGGCGATTCCTTTATGAGCGATCCTGACCGCGT    476

BSNT_03959___    453 TGAAGAGGT------GCGTGCGAGATTTTCTGATCTGTACGCGGTTGAAA    496
                     .|.|    |      ||| ||.|| |||...||.||.|||||||||||||
BL02020___mtn    477 CGCA----TTCATCCGCG-GCAAG-TTTGAAGACCTTTACGCGGTTGAAA    520

BSNT_03959___    497 TGGAGGCTGCGGCAGTGGCTCAAGTGTGCCATCAATTTAAAACGCCGTTT    546
                     ||||.||||||||.||.||.||.||.|...||||||||||.|||||||||
BL02020___mtn    521 TGGAAGCTGCGGCTGTCGCGCAGGTTTCTTATCAATTTAATACGCCGTTT    570

BSNT_03959___    547 GTCGTCATCAGAGCATTATCTGATATTGCAGGAAAAGAATCACATGTTTC    596
                     ||.||||||||.||..|.||.||.||.||.|||||||||||..|..||||
BL02020___mtn    571 GTTGTCATCAGGGCGCTCTCAGACATCGCCGGAAAAGAATCTGAAATTTC    620

BSNT_03959___    597 ATTTGACCAATTTTTAGAGCAGGCGGCTGTCCATTCAACAGAGCTTGTGT    646
                     |||||||||||||||.||.|||||.||....|||||.|||||.||||||.
BL02020___mtn    621 ATTTGACCAATTTTTGGAACAGGCTGCCAAGCATTCGACAGATCTTGTGC    670

BSNT_03959___    647 T----AAAGGTGATCAAACGAATTCATTAA    672
                     |    |    ||||.|||.||||..|||||
BL02020___mtn    671 TTCGCA----TGATTAAAAGAATCAATTAA    696


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