Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03963 and BL02022

See Amino acid alignment / Visit BSNT_03963 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:59
# Commandline: needle
#    -asequence dna-align/BSNT_03963___yrrS.1.5803.seq
#    -bsequence dna-align/BL02022___yrrS.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03963___yrrS-BL02022___yrrS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03963___yrrS-BL02022___yrrS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03963___yrrS
# 2: BL02022___yrrS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 749
# Identity:     502/749 (67.0%)
# Similarity:   502/749 (67.0%)
# Gaps:         109/749 (14.6%)
# Score: 1647.0
# 
#
#=======================================

BSNT_03963___      1 TTGAGC--AATAA-TCAATCTCGTTATGAAAATCGTGATAAACGCAGAAA     47
                     ||||||  ||.|| ..|||||||||.|||||||||||||||.|||||.||
BL02022___yrr      1 TTGAGCGAAACAAGGGAATCTCGTTTTGAAAATCGTGATAAGCGCAGGAA     50

BSNT_03963___     48 AGCCAATTTAGTGCTTAACATTTTAATCGCAATCGTATCCATACTAATTG     97
                     |||.|||.|.|||||||||||||||||.|..|||||||...||.||||.|
BL02022___yrr     51 AGCGAATCTTGTGCTTAACATTTTAATAGGCATCGTATTGGTATTAATCG    100

BSNT_03963___     98 TCGTAGTAG-CAGCGAATCTCTTCATTAACAGTCCTTCT-----AGCA--    139
                     |.||.||.| |||| |.|||..|.||.||||||||         ||||  
BL02022___yrr    101 TTGTCGTTGCCAGC-AGTCTGATGATGAACAGTCC----GAAGGAGCAGG    145

BSNT_03963___    140 ------AAGATGTC---AGCAAGGATTCTGAAACGGCGCAAAAACAGGAA    180
                           ||||||||   |..||.|||||||||..|.||     ||| |||
BL02022___yrr    146 CGCAGCAAGATGTCTCGAAAAACGATTCTGAACAGACG-----ACA-GAA    189

BSNT_03963___    181 TCTCCGGCTTCAGGAAAGACGGAAAAGAAATCGGATGAGGATATAAAAGA    230
                     .|.||.|||||.|..||.|.|.||.|.|.|||.|||||.|||.|||||||
BL02022___yrr    190 GCGCCTGCTTCCGACAATAAGAAACAAACATCTGATGAAGATGTAAAAGA    239

BSNT_03963___    231 -CAGCAAGAAAGATACATCTGACAGCGAAAAG-GATTCTG-------AGA    271
                      .||.|..||.||              ||||| |||||||       |||
BL02022___yrr    240 TGAGGACAAAGGA--------------AAAAGCGATTCTGCCGATAAAGA    275

BSNT_03963___    272 AGTC-----TTCTGACTCTGATTCCAA----AAAAGATGATTCTTCTTCT    312
                     ||.|     |||.|||||.||   |||    |||    ||.|||.||||.
BL02022___yrr    276 AGACAGCGATTCCGACTCAGA---CAAGGATAAA----GAATCTGCTTCA    318

BSNT_03963___    313 AAAAAGGATGATTCTGATTCAGATTCAAGCTCAGATTCAGCCAGTGATGG    362
                     .|..||||           || |.||||..|||||         ||||..
BL02022___yrr    319 GACGAGGA-----------CA-AGTCAACATCAGA---------TGATCC    347

BSNT_03963___    363 GCTTAAAGATGCAAAAGTAACAGAAGGCGGCTCATCGAGCG---ATGTGG    409
                     |.||.|||..||..||||.|||||||||||.|||   ||||   ||||.|
BL02022___yrr    348 GTTTGAAGGAGCCGAAGTGACAGAAGGCGGTTCA---AGCGCCAATGTTG    394

BSNT_03963___    410 AAAAAACGTATGA-AAATCCTGACTGGAAAGCAGTCGG-----AACTGAG    453
                     |||||||| ||.| .||||||||||||.|..|.|||||     |||.|||
BL02022___yrr    395 AAAAAACG-ATCATCAATCCTGACTGGGAGCCTGTCGGCACACAACAGAG    443

BSNT_03963___    454 CAAACAGGCGAGCATGCCGCTACTTATGATTCAAGCTCGCAAGACTGGGC    503
                     |     ||..|||||.||||.||.||||||||....||.|||||||||..
BL02022___yrr    444 C-----GGACAGCATACCGCAACATATGATTCCTCTTCACAAGACTGGAA    488

BSNT_03963___    504 TGAGATGCTGAAAGCCATTTCATACGCAACTGGTGTCTCAACAGATAACA    553
                     .||.|||||..|||||||||||||.||.||.||.||.||.|..|||||||
BL02022___yrr    489 GGAAATGCTTGAAGCCATTTCATATGCGACAGGGGTTTCTAAGGATAACA    538

BSNT_03963___    554 TGACGGTGCTCTGGCTTGGAAATAACGGCAGCCCTCAGGATGCCAAAGGC    603
                     ||||||||.|||||||.|||||.|||||||||||.||.|||||.|||||.
BL02022___yrr    539 TGACGGTGATCTGGCTCGGAAACAACGGCAGCCCGCAAGATGCGAAAGGA    588

BSNT_03963___    604 AAGATTTTGGACAAGGCGACTGGGAATAAATATCAAGTCACGATTACATG    653
                     |..|||..||..||||..|||||....|||||.||.||..|.|||||.||
BL02022___yrr    589 ACCATTCGGGCGAAGGACACTGGCGTCAAATACCAGGTAGCCATTACTTG    638

BSNT_03963___    654 GGTCGATGAAAAAGGCTGGAAGCCGACAAAAGTAGAAAAGCTAAAATAA    702
                     |||.||.|.||||||||||||||||||||||||.|||.|..|.||||||
BL02022___yrr    639 GGTTGACGGAAAAGGCTGGAAGCCGACAAAAGTTGAACAATTGAAATAA    687


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