Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03977 and BL02033

See Amino acid alignment / Visit BSNT_03977 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:00
# Commandline: needle
#    -asequence dna-align/BSNT_03977___alaS.1.5803.seq
#    -bsequence dna-align/BL02033___alaS.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03977___alaS-BL02033___alaS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03977___alaS-BL02033___alaS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03977___alaS
# 2: BL02033___alaS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2661
# Identity:    2049/2661 (77.0%)
# Similarity:  2049/2661 (77.0%)
# Gaps:          48/2661 ( 1.8%)
# Score: 7699.0
# 
#
#=======================================

BSNT_03977___      1 ATGAA-ACACTTAACTTCTGCGGAAGTGCGTCAAATGTTTTTGGATTTCT     49
                     ||||| ||| |||||.||.||..|||||||.|||||||||||.||.||.|
BL02033___ala      1 ATGAAGACA-TTAACATCCGCACAAGTGCGCCAAATGTTTTTAGACTTTT     49

BSNT_03977___     50 TTAAAGAAAAAGGACATGCGGTAGAGCCAAGCGCGTC-ATTAGTGCCTCA     98
                     |||||||||||||.|||||.||.||.||.|||||.|| .||| |.||.||
BL02033___ala     50 TTAAAGAAAAAGGGCATGCCGTTGAACCGAGCGCCTCTCTTA-TTCCGCA     98

BSNT_03977___     99 TGAGGATCCTTCACTGCTTTGGATCAACAGCGGTGTTGCGACGCTGAAAA    148
                     |||.|||||.||.||||||||||||||||||||.||.|||||||||||||
BL02033___ala     99 TGAAGATCCCTCCCTGCTTTGGATCAACAGCGGAGTCGCGACGCTGAAAA    148

BSNT_03977___    149 AATATTTTGACGGCCGTGTCGTGCCGGAAAATCCAAGAATCGTAAACGCT    198
                     |||||||||||||.||.||.||||||||.|||||..|.|||...||||||
BL02033___ala    149 AATATTTTGACGGACGGGTTGTGCCGGAGAATCCGCGCATCTGCAACGCT    198

BSNT_03977___    199 CAAAAAGCGATCAGAACAAACGATATAGAAAATGTAGGTAAAACTGCGCG    248
                     ||||||.|.|||||.||.||||||||.||.|||||.||.|||||.||.||
BL02033___ala    199 CAAAAATCAATCAGGACGAACGATATTGAGAATGTCGGGAAAACAGCCCG    248

BSNT_03977___    249 GCATCACACTTTCTTTGAAATGCTCGGAAACTTTTCCATCGGCGATTATT    298
                     .||.||.||.||||||||.||||||||.||||||||.|||||||||||||
BL02033___ala    249 CCACCATACGTTCTTTGAGATGCTCGGCAACTTTTCGATCGGCGATTATT    298

BSNT_03977___    299 TCAAAGAAGAAGCCATTACATGGGCTTGGGAGTTTTTAA-CGAGCGACAA    347
                     |||||||||||||.||....|||||.|||||.||||||| |||.| |.||
BL02033___ala    299 TCAAAGAAGAAGCGATCGAGTGGGCATGGGAATTTTTAACCGATC-AAAA    347

BSNT_03977___    348 GTGGATTGGCTTCGACAAAGAGCTTCTCTCTGTTACGGTTCATCCTGAAG    397
                     .|||||.||||||||....||.|..||.||.||.|||||.|||||.||||
BL02033___ala    348 ATGGATCGGCTTCGATCCCGAACGCCTGTCAGTCACGGTGCATCCGGAAG    397

BSNT_03977___    398 ATGAAGAGGCATATGAGTTTTGGGCGAAAAAAATCGGTATTCCTGAAGAA    447
                     ||||.||.||.|||||.||.|||.|.|||||||||||.||.|||||.|||
BL02033___ala    398 ATGACGAAGCGTATGAATTATGGTCAAAAAAAATCGGCATACCTGAGGAA    447

BSNT_03977___    448 AGAATTATCCGTCTGGAAGGGAACTTCTGGGATATCGGTGAAGGGCCGAG    497
                     .|.||.|||.|.||||||||.|||||||||||||||||.|||||.|||||
BL02033___ala    448 CGGATCATCAGACTGGAAGGAAACTTCTGGGATATCGGCGAAGGCCCGAG    497

BSNT_03977___    498 CGGACCGAATACGGAAATCTTTTACGACCGCGGTGAAGCATACGGTAATG    547
                     ||||||.|||||.||||||||.||.|||||||||||||..||.||.||||
BL02033___ala    498 CGGACCAAATACCGAAATCTTCTATGACCGCGGTGAAGATTATGGAAATG    547

BSNT_03977___    548 ATCCAGAAGATCCGGAGCTTTACCCAGGCGGAGAAAACGACCGTTACCTG    597
                     ||||....|||||||||||||||||.|||||.||.|||||.||||||||.
BL02033___ala    548 ATCCGTCTGATCCGGAGCTTTACCCGGGCGGGGAGAACGAGCGTTACCTA    597

BSNT_03977___    598 GAAGTATGGAACCTTGTGTTCTCAGAGTTCAACCATAACCCTGACGGCAC    647
                     |||||||||||||||||||||||.|||||||||||.||.||||||||.||
BL02033___ala    598 GAAGTATGGAACCTTGTGTTCTCCGAGTTCAACCACAATCCTGACGGAAC    647

BSNT_03977___    648 GTACACACCGCTTCCGAAGAAAAACATTGATACAGGCATGGGTCTTGAAA    697
                     .||||||||||||||||||||||||||||||||.||.||||||||||||.
BL02033___ala    648 ATACACACCGCTTCCGAAGAAAAACATTGATACCGGGATGGGTCTTGAAC    697

BSNT_03977___    698 GAATGGTATCTGTCATCCAGAATGTTCC--GACAAACTTTGACACCGATT    745
                     |.|||||||||||.||.||..|.|  ||  |||.||||.|||.||.||||
BL02033___ala    698 GGATGGTATCTGTTATTCAAGACG--CCAAGACGAACTATGATACGGATT    745

BSNT_03977___    746 TGTTTGTTCCGATCATTAAAGCAACAGAATCGATTTCTGGTGAAACATAT    795
                     |||||.|.||||||||.||.||.||||||.|.|||||.||.||||..||.
BL02033___ala    746 TGTTTATGCCGATCATCAAGGCGACAGAAGCCATTTCAGGAGAAAAGTAC    795

BSNT_03977___    796 GGCAAAGACAATGTG-----AAAGACACTGCGTTTAAAGTGATTGCTGAC    840
                     ||||     .||.||     |||||.||.||||||||.||..|.||.||.
BL02033___ala    796 GGCA-----CATCTGCTGAAAAAGATACGGCGTTTAAGGTTGTGGCCGAT    840

BSNT_03977___    841 CATATCAGAACGGTTGCCTTTGCTGTCAGTGACGGTGCGCTGCCGTCAAA    890
                     ||||||.|.||||.|||.|||||.|||.|.|||||.|||||.||||||||
BL02033___ala    841 CATATCCGGACGGCTGCGTTTGCGGTCGGCGACGGAGCGCTTCCGTCAAA    890

BSNT_03977___    891 TGAAGGCCGCGGCTATGT-ATTAAGACGCTTATTACGCCGTGCCGTGCGT    939
                     .||.||.||||||||||| ||.|..|.|||..|| |||||.||.||.||.
BL02033___ala    891 CGAGGGGCGCGGCTATGTCATCAGAAGGCTGCTT-CGCCGCGCTGTCCGC    939

BSNT_03977___    940 TATGCCAAAACGATCAACATCCATCGTCCGTTCATGTTTGATTTAGTGCC    989
                     |||||.||..|.|||||.|||.|.||||||||.||||.|||..|.||.||
BL02033___ala    940 TATGCGAAGTCCATCAATATCAACCGTCCGTTTATGTATGAGCTCGTACC    989

BSNT_03977___    990 GGTTGTCGCAGAAATCATGGCTGATTTCTATCCTGAAGTGAAAGAGAAAG   1039
                     |||.||.||.||.||||||||.|.||||||....|||||.|||||.||||
BL02033___ala    990 GGTAGTTGCCGACATCATGGCCGCTTTCTACGGCGAAGTCAAAGAAAAAG   1039

BSNT_03977___   1040 CGGATTTCATCGCAAAAGTCATTAAAACCGAGGAAGAACGCTTCCATGAG   1089
                     ||||.||.|||||.||||||||.|||||.||||||||||||||||||||.
BL02033___ala   1040 CGGACTTTATCGCGAAAGTCATCAAAACAGAGGAAGAACGCTTCCATGAA   1089

BSNT_03977___   1090 ACCCTTAATGAAGGGCTT-GCGATCCTGTCAGAAATGATCAAAAAAGAAA   1138
                     ||..|..|.||| ||||| |||||.||.||||||.|.||..||||.||||
BL02033___ala   1090 ACATTGCACGAA-GGCTTGGCGATTCTCTCAGAAGTTATTCAAAAGGAAA   1138

BSNT_03977___   1139 AAGACAAGGGCAGCAGCGTTATCTCAGGTGCTGATGTGTTTAAACTGTAT   1188
                     |||..||.||.|.|.||.|.||.||.||.|..|||||.||||||||||||
BL02033___ala   1139 AAGCAAAAGGAAACCGCATCATTTCCGGGGAAGATGTCTTTAAACTGTAT   1188

BSNT_03977___   1189 GATACGTATGGATTCCCGGTTGAATTGACTGAAGAATACGCAGAAGACGA   1238
                     |||||||||||||||||.||||||.||||.|||||||||||.|||||.||
BL02033___ala   1189 GATACGTATGGATTCCCTGTTGAACTGACCGAAGAATACGCCGAAGATGA   1238

BSNT_03977___   1239 GAACATGACGGTTGACCATGAGGGCTTTGAGGAGGAAATGAACCAGCAGC   1288
                     ...||||...||.||.|||||.||.||||||...||.|||.||.||||||
BL02033___ala   1239 AGGCATGGAAGTCGATCATGAAGGATTTGAGCGCGAGATGGACAAGCAGC   1288

BSNT_03977___   1289 GTGAACGGGCAAGAAACGCCCGCCAGGATGTCGGCAGCATGCAGGTGCAG   1338
                     |.||||||||..|..|.||.||||||||.|||||||||||||||||.||.
BL02033___ala   1289 GCGAACGGGCCCGGCAGGCGCGCCAGGACGTCGGCAGCATGCAGGTTCAA   1338

BSNT_03977___   1339 GGCGGCGCACTGCGCGA---CGTGACCGATGAAAGCACATTTGTCGGCTA   1385
                     ||||||||.||.|||||   |.||||   .||||||...||..|||||||
BL02033___ala   1339 GGCGGCGCTCTCCGCGATATCATGAC---AGAAAGCGAGTTCATCGGCTA   1385

BSNT_03977___   1386 CTCTCAAACCAAAGCTGATGCCAATATCATTGTGCTTCTTCAGGACGGCC   1435
                     .||..|.|.||||.|.||..|.||.|||...|.|||||||||.|||||..
BL02033___ala   1386 TTCCGATATCAAAACGGAAACGAAAATCGCCGAGCTTCTTCAAGACGGAG   1435

BSNT_03977___   1436 AATTAATCGAAGAGGCTTATGAAGGAGAAAGCGTTCAAATCATTCTTGAT   1485
                     ||.|..||||....|.|.|.|||||..|||..|||||..|||||||.||.
BL02033___ala   1436 AACTTGTCGATCTCGTTCAGGAAGGCCAAAAGGTTCAGTTCATTCTGGAA   1485

BSNT_03977___   1486 GAAACACCGTTCTATGCAGAAAGCGGCGGCCAAATCGGGGATAAAGGCTA   1535
                     .||||.|||||||||||.|||||||||||.||||||||.||||||||||.
BL02033___ala   1486 AAAACGCCGTTCTATGCTGAAAGCGGCGGACAAATCGGTGATAAAGGCTG   1535

BSNT_03977___   1536 TCTCCGAAGCGAGCAGGCAGTTGTAAGAATTAAAGATGTTCAAAAAGCGC   1585
                     ..|...|||||...|.||.|.|.|..|..|.|.|||.|||.|||||||||
BL02033___ala   1536 GGTTAAAAGCGGTGATGCGGCTATTCGCGTCACAGACGTTAAAAAAGCGC   1585

BSNT_03977___   1586 CAAACGGCCAGCATGTGCATGAAGGTGTTGTGGAGAGCGGTACTGTTCAA   1635
                     |||||||||||||..||||||||||..|.|||||.|||||..|..||.||
BL02033___ala   1586 CAAACGGCCAGCACCTGCATGAAGGGATCGTGGAAAGCGGCGCAATTAAA   1635

BSNT_03977___   1636 AAAGGCCTGCATGTTACGGCTGAAGTTGAAGACCATATGAGAAGCGGCGT   1685
                     ||||||.||...||.||.||.|||||....||.|...|.||||..|.|.|
BL02033___ala   1636 AAAGGCATGAGCGTGACCGCAGAAGTCACGGAGCGGCTCAGAAAAGACAT   1685

BSNT_03977___   1686 CATTAAAAACCACACGGCAACGCATTTATTGCATCAGGCTCTAAAAGACG   1735
                     |.|.||||||||.||.||.||.||..|..|.||.|||||.||.|||||.|
BL02033___ala   1686 CGTCAAAAACCATACCGCGACACACCTGCTTCACCAGGCGCTGAAAGATG   1735

BSNT_03977___   1736 TTCTTGGAACTCATGTCAATCAGGCTGGCTCTCTTGTAACGGAAAACCGT   1785
                     |.||.||.||.||||||||.|||||.|||||.||.||.||.||.|.||||
BL02033___ala   1736 TGCTCGGTACGCATGTCAACCAGGCCGGCTCGCTAGTCACTGACAGCCGT   1785

BSNT_03977___   1786 CTTCGTTTTGACTTCTCGCACTTTGGCCAAGTGACAAAAGAAGAGCTCGA   1835
                     ||.||.|||||||||||.||||||||.||.||||||||.|||||.|||||
BL02033___ala   1786 CTGCGCTTTGACTTCTCTCACTTTGGACAGGTGACAAAGGAAGAACTCGA   1835

BSNT_03977___   1836 ACAAATTGAAAGAATCGTAAACGAAAAGATCTGGGCGAGC-ATTCCGG-T   1883
                     ||||||.||||.||..||.|||||.||.||.||||| |.| ||||||| |
BL02033___ala   1836 ACAAATCGAAACAAAAGTGAACGAGAAAATTTGGGC-ATCGATTCCGGTT   1884

BSNT_03977___   1884 CAGCATTGATTTGAAACCGATCGCTGAAGCAAAAGAAATGGGTGCGATGG   1933
                     || .||.||.||.||||||||.||||||||.||||..|||||.||.||||
BL02033___ala   1885 CA-AATCGACTTAAAACCGATTGCTGAAGCGAAAGCGATGGGAGCCATGG   1933

BSNT_03977___   1934 CACTGTTCGGCGAAAAATATGGCGATATTGTCCGTGTCGTTCAAGTTGGA   1983
                     |||||||||||||||||||.||.||.||.|||||.||.||||||||.||.
BL02033___ala   1934 CACTGTTCGGCGAAAAATACGGGGACATCGTCCGCGTTGTTCAAGTCGGC   1983

BSNT_03977___   1984 GATTACAGCTTAGAGCTGTGCGGCGGCTGCCATGTCAGAAATACAGCAGA   2033
                     ||.||||||.|.|||||||||||.|||||||||||.||||||||.||.||
BL02033___ala   1984 GACTACAGCATCGAGCTGTGCGGAGGCTGCCATGTGAGAAATACGGCTGA   2033

BSNT_03977___   2034 AATCGGCTTGTTTAAAATCGTTTCTGAATCCGGAATCGGAGCAGGCACAA   2083
                     |||||||.|.|||||.|||||.||.|||||.||||||||.||.|||||..
BL02033___ala   2034 AATCGGCCTCTTTAAGATCGTATCCGAATCAGGAATCGGGGCTGGCACCC   2083

BSNT_03977___   2084 GACGGATTGAAGCTGTAACGGGACAAGGCGCTTACGTCGAAATGAACAGC   2133
                     |..||||.|||||||||||.||.||.||||||||||..||.|||||| ||
BL02033___ala   2084 GCAGGATCGAAGCTGTAACAGGGCAGGGCGCTTACGAAGAGATGAAC-GC   2132

BSNT_03977___   2134 CAGATTTCTG-----TATTGAAGCAGACCGCTGACGAGCTGAAAACAAAT   2178
                     ||.|   |||     |.|.||| |||.|.||.||.|..||||||||.||.
BL02033___ala   2133 CAAA---CTGGAGCTTCTCGAA-CAGGCGGCAGAAGTCCTGAAAACCAAC   2178

BSNT_03977___   2179 ATCAAAGAAGTGCCGAAACGGGTTGCGGCTCTGCAGGCTGAACTGAAGGA   2228
                     .|.||.|||||||||||||||.|.|..||.||.|||.||||.|||||.||
BL02033___ala   2179 GTGAAGGAAGTGCCGAAACGGATCGAAGCGCTCCAGTCTGATCTGAAAGA   2228

BSNT_03977___   2229 AGCACAAAGAGAAAATGAATCTCTTCTT-GCAAAACTAGGCAACGTGGAA   2277
                     .||.||.||||||||.|||||| ||.|| ||.|||||.|||||....|||
BL02033___ala   2229 TGCTCAGAGAGAAAACGAATCT-TTATTGGCGAAACTGGGCAATAAAGAA   2277

BSNT_03977___   2278 GCAGGAGCAATCCTGTCGAAAGTAAAAGAAGTTGACGGCGT-AAACGTGC   2326
                     ||.||||..||..||...||||||||||||.|||||||..| |||| |||
BL02033___ala   2278 GCCGGAGAGATTTTGGAAAAAGTAAAAGAAATTGACGGAATCAAAC-TGC   2326

BSNT_03977___   2327 TTGCGGCAAAAGTAAATGCAAAAGACATGAATCATCTCCGCACTATGGTC   2376
                     |.||.|.||||||.|||||.|||||.||||||||.||.|||||.|||||.
BL02033___ala   2327 TCGCAGAAAAAGTGAATGCCAAAGATATGAATCACCTGCGCACAATGGTT   2376

BSNT_03977___   2377 GATGAACTCAAAGCAAAGCTTGGCTCTGCGGTGATCGTGCTTGGTGCGGT   2426
                     ||.||.||.||.||.||.||.|||||.||.||.||.||.||.||.|||||
BL02033___ala   2377 GACGATCTGAAGGCGAAACTGGGCTCAGCCGTTATTGTTCTCGGGGCGGT   2426

BSNT_03977___   2427 ACAAAACGATAAAGTTAATATCTCTGCCGGAGTCACAAAGGACCTCATTG   2476
                     .||||||||.|||||.|||||.||.||||||||.|||||.||..|.||.|
BL02033___ala   2427 TCAAAACGAAAAAGTGAATATTTCCGCCGGAGTTACAAAAGATTTAATAG   2476

BSNT_03977___   2477 AGAAAGGCCTTCACGCCGGCAAGCTGGTTAAACAAGCTGCGGAAGTTTGC   2526
                     ||...||..|.|||||.||||||||.||.||.||||..||.||||..|||
BL02033___ala   2477 AGCGGGGTTTCCACGCAGGCAAGCTTGTCAAGCAAGTCGCAGAAGCATGC   2526

BSNT_03977___   2527 GGCGGAGGCGGCGGAGGCCGTCCGGACATGGCGCAGGCAGGCGGTAAACA   2576
                     ||.||.|||||.||.||||||||.||||||||||||||.||.||.|||||
BL02033___ala   2527 GGAGGCGGCGGAGGCGGCCGTCCTGACATGGCGCAGGCGGGAGGAAAACA   2576

BSNT_03977___   2577 GCCGGAAAAATTAGAAGAAGCTTTGGCTTCTGTAGAAGATTGGGTGAAAT   2626
                     |||.||.....|.|.||||||.||.||.||||..|||||.|||||.||||
BL02033___ala   2577 GCCTGAGCGGCTGGCAGAAGCATTAGCATCTGCGGAAGAATGGGTAAAAT   2626

BSNT_03977___   2627 CCGTTTTATAA   2637
                     |||||||||||
BL02033___ala   2627 CCGTTTTATAA   2637


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