Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03979 and BL02034
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:00
# Commandline: needle
# -asequence dna-align/BSNT_03979.1.5803.seq
# -bsequence dna-align/BL02034___yrrI.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03979-BL02034___yrrI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03979-BL02034___yrrI.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03979
# 2: BL02034___yrrI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1115
# Identity: 598/1115 (53.6%)
# Similarity: 598/1115 (53.6%)
# Gaps: 331/1115 (29.7%)
# Score: 1843.0
#
#
#=======================================
BSNT_03979 0 -------------------------------------------------- 0
BL02034___yrr 1 ATGCTGAAAAAACCGCTGCAGCTTTTAATGTGGGTCTCGATCTTTATGCT 50
BSNT_03979 0 -------------------------------------------------- 0
BL02034___yrr 51 TTTGCTATTAACCGTCTATATCTTTTTGCAGCTGAGAATGATTTGGGAGC 100
BSNT_03979 0 -------------------------------------------------- 0
BL02034___yrr 101 CTGTCTGCGTGCTGCTCAAGTCGATTCTGATCCCGCTGGCGATCGCGGTT 150
BSNT_03979 0 -------------------------------------------------- 0
BL02034___yrr 151 TTTATCACCTATCTGCTTTTGCCTGTCGTGGAAAAGATACACCGGGCAGG 200
BSNT_03979 1 ----------------------TTGGTCATTTATGTTCTTTTTTTTGGCG 28
|||.|.||||||.||||.|||||||..|
BL02034___yrr 201 CGTGCCGAGAACATTGAGTATTTTGCTGATTTATTTTCTGTTTTTTGCAG 250
BSNT_03979 29 GGATTGGCTGGGCGTTGTATAAAGGGGTG-----CCTGTTTTAATCGTGC 73
|..|.||||..||.||.||.||||||||| |||..||.|| |
BL02034___yrr 251 GTCTCGGCTACGCTTTTTACAAAGGGGTGCCGATCCTCATTAAA-----C 295
BSNT_03979 74 AGCTGACGGATTTGTCAGAAAATATACCCATGTTTGCCG----AAACGTA 119
|||||||.||..|.|||||....||.||..|..|||||| |.||| |
BL02034___yrr 296 AGCTGACAGAGCTTTCAGAGGGAATTCCGGTTCTTGCCGCATCATACG-A 344
BSNT_03979 120 TAACGGGCTTCTTCTTCATGTGCATAACCATACGGATGACTGGCCTGATG 169
.||| .|.||...|||..|||||.|.|||||.||.|.|||||||||.|
BL02034___yrr 345 AAAC---ATGCTGGATCAGCTGCATCATCATACAGACGGCTGGCCTGACG 391
BSNT_03979 170 GTATGCATCACCGTATAGATAAAATGATCCG----CCAGACGG-AGACGT 214
|.|||||..||.|..|.||.| |.|.|| .||||||| ||| .|
BL02034___yrr 392 GCATGCACGACAGAGTCGACA----GGTTCGTCAATCAGACGGAAGA-AT 436
BSNT_03979 215 TTTTTGC------GG--GAACGATCGAGGGTGCGATCAGCGGGATCCGCA 256
|..|||| || ||||| ||.|.|.||| ||| |||||
BL02034___yrr 437 TCGTTGCAAGCTGGGTAGAACG---GACGATACGA--AGC---ATCCG-- 476
BSNT_03979 257 AT--GTGCTTGATTACT----TCTTAATTGCTGC-AACAATCCCTTTTCT 299
|| ||..||||||| | ||| |.||.|| |.||.|||.|||| |
BL02034___yrr 477 ATTCGTTTTTGATTA-TATGCTCT---TGGCGGCGATCATTCCGTTTT-T 521
BSNT_03979 300 CGTGTTTTATATGGTGAAGGACATTGAATTA--ATGAAAAAGACAGTATG 347
.||.||.||.||||||||.||.||||| || |||||||||.|.|||||
BL02034___yrr 522 AGTATTCTACATGGTGAAAGATATTGA--TACGATGAAAAAGGCGGTATG 569
BSNT_03979 348 GTACTTGACTCCGAAGTCGTGGAGAAAGC--GGGGCAGCGCCTTTTTGCG 395
|||.|||||.||....||.||||| ||| |.|||||||..||..|.||
BL02034___yrr 570 GTATTTGACGCCTTCTTCATGGAG--AGCAAGAGGCAGCGAATTCATCCG 617
BSNT_03979 396 GGATGTGGATGATTCGCTTGGCGATTATATCCGCGGCCAGCTTTTGGTCT 445
||||||.||||||||.||.||.||.||.|||.|.|||||||||||.||||
BL02034___yrr 618 GGATGTCGATGATTCTCTCGGGGACTACATCAGAGGCCAGCTTTTTGTCT 667
BSNT_03979 446 G-CTTGATTC-TTGGCGTGATTGCAGGCATTTCGTTCTGGGTATTTGGGC 493
| |||| || |.|||.||...||..||.|.||.||.|||.|.||||..|
BL02034___yrr 668 GCCTTG--TCATCGGCTTGGGAGCGAGCCTGTCATTTTGGTTTTTTGACC 715
BSNT_03979 494 TTCCGTATCCACTGATACTTGGCCTTATC-TCTGGAGTAACGAATGTCAT 542
|.||.|||||.|||||.||.||||||.|| || ||.|..||.||||||||
BL02034___yrr 716 TGCCCTATCCGCTGATCCTCGGCCTTGTCATC-GGCGCGACAAATGTCAT 764
BSNT_03979 543 CCCGTATTTTGGCCCTTTCATCGGAGCTGTTCCTGC-------GTTG--- 582
.||||||||.||||||.|||||||.||..||||.|| ||.|
BL02034___yrr 765 TCCGTATTTCGGCCCTGTCATCGGCGCGATTCCGGCTGTCATGGTAGCAG 814
BSNT_03979 583 ----TTAATTGCGATGACGATCTCAGTGAAGGCGGTTCTTGTTGTGGTGA 628
||.|| |||.||.|.|| |||.|.||.|||.|.|
BL02034___yrr 815 CCGCTTTAT--CGACGAGGCTC------------GTTTTCGTGGTGATCA 850
BSNT_03979 629 TTACGGTGTTTATTCTGCAGTTTATGGAAGGAAATATCCTCAGTCCGTTC 678
|||||.|.||.|||||.||||||||.|||||.|||||||||.|.||..|.
BL02034___yrr 851 TTACGATTTTGATTCTTCAGTTTATTGAAGGCAATATCCTCGGGCCCCTT 900
BSNT_03979 679 ATTGTCGGCAGAAGCCTTAAAATGCATCCGGTCGTTATCATGCTTGCACT 728
.|.|||||||.||||||..|.|||||||||||.||.||.|||||||.|.|
BL02034___yrr 901 GTCGTCGGCAAAAGCCTGCATATGCATCCGGTTGTCATTATGCTTGGATT 950
BSNT_03979 729 CCTTGCCGGAGGGGAGCTTGCGGGAATCGTCGGGATGATTCTGGCTGTTC 778
.||.||.||.|||||||||||.||.|||.||||.||||||||||||||.|
BL02034___yrr 951 GCTGGCGGGCGGGGAGCTTGCCGGCATCATCGGCATGATTCTGGCTGTGC 1000
BSNT_03979 779 CTGCGACGGCTGTTTTAAAAGTAATGATGATCCATTTTTT-GCGG-ATGA 826
|||..|.|||||||.|.|||||.|||.|..|||||||||| |||| |.||
BL02034___yrr 1001 CTGTCATGGCTGTTATCAAAGTGATGCTCGTCCATTTTTTAGCGGCAAGA 1050
BSNT_03979 827 GGA-CGGAGCATTGA 840
..| ||.|.
BL02034___yrr 1051 AAAGCGTAA------ 1059
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