Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00921 and BL02074

See Amino acid alignment / Visit BSNT_00921 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:28
# Commandline: needle
#    -asequence dna-align/BSNT_00921___ydfB.1.5803.seq
#    -bsequence dna-align/BL02074.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00921___ydfB-BL02074.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00921___ydfB-BL02074.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00921___ydfB
# 2: BL02074
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 933
# Identity:     449/933 (48.1%)
# Similarity:   449/933 (48.1%)
# Gaps:         327/933 (35.0%)
# Score: 831.5
# 
#
#=======================================

BSNT_00921___      1 ----TTG--CAGGAAT----TAACAAAAGAAAAGTATAGTAGCTTAAAAA     40
                         |||  |.|.|||    |.|.|||.||||||.|.||  ||||     
BL02074            1 ATGATTGAACTGAAATCGAGTGAAAAACGAAAAGCAAAG--GCTT-----     43

BSNT_00921___     41 CAATGTTTGATG-ACAAATATTGTCCCACATTTGTCTATTCAATATTAGA     89
                        ||||.|..| |.|||    |.||.|||||.|...||.|.|||...||
BL02074           44 ---TGTTAGCGGAAGAAA----GCCCGACATTCGCGCATGCGATAGCCGA     86

BSNT_00921___     90 CCAAACCATTCCG--GGAGCTGTTTATGCAGATGATCAAACCTTTCCT-A    136
                     ...||.|||  ||  |||...||.||||..|||||       |||||| |
BL02074           87 AGGAATCAT--CGAAGGAAACGTCTATGTCGATGA-------TTTCCTCA    127

BSNT_00921___    137 AATCG----------TTTTTTATAGGAACTGAATCAGGCATTTATTTTAT    176
                     .|.||          |||||    .||||....||.||.|||||||.|.|
BL02074          128 CACCGGCCACTGCTCTTTTT----CGAACATCTTCCGGGATTTATTATGT    173

BSNT_00921___    177 TGCGGGAGACCAAGGGAATCGGGATTTTCATGATTTCATTGCAG-GATAT    225
                     .||.|||.|||      .||.|||                 ||| |    
BL02074          174 CGCTGGAAACC------CTCCGGA-----------------CAGCG----    196

BSNT_00921___    226 TATGAAGAA-CAAGTG------------AAATCATCAAA----------A    252
                        |||||| |.||||            ||||.|.||.|          .
BL02074          197 ---GAAGAAGCGAGTGGCTCCATTATTTAAATGAACAGAGGAGCGGAGCG    243

BSNT_00921___    253 CGATTTACCTTGTTTT---CTTCCAGTGATACA-TGGGATAGCGTACTGA    298
                     ||.||||||.||||||   ||||   ||| |.| ||||| .||.|..|.|
BL02074          244 CGCTTTACCGTGTTTTCGGCTTC---TGA-AGAGTGGGA-CGCTTTTTTA    288

BSNT_00921___    299 AAC-----------CCATACTGAAAGATGACTTAAACCAAATGAGAAGAG    337
                     |.|           |.||.||          .|..|.||||||    |||
BL02074          289 ATCGGGGGGCTTGGCGATCCT----------CTGCAGCAAATG----GAG    324

BSNT_00921___    338 C---TG-CATTTTCTTATCAACCAAAATATC--CCAAAAAGA--------    373
                     |   || ||||||                ||  |..||||||        
BL02074          325 CGCGTGTCATTTT----------------TCCTCGGAAAAGAGGAGCGTG    358

BSNT_00921___    374 -------CTTTGCAACTGCCAAAGGGTCTTGTATTGAAAAGA---ATAGA    413
                            |...|||..||||    ||..|||      |||||   |..||
BL02074          359 ATTGCGGCGCAGCATTTGCC----GGGGTTG------AAAGATTTACTGA    398

BSNT_00921___    414 CGAAGACATCATTTCACACAGCACAGCG----TTTAACAG-------CGC    452
                     .||.|||    .||||.|    |.||||    |||.||.|       |||
BL02074          399 AGATGAC----CTTCAAA----AAAGCGCGAATTTTACTGAAAAATACGC    440

BSNT_00921___    453 GTATTATGAGGAGTATTGGGATTCTGTCTCA-----CAG----TTTGCTT    493
                           |||.||||||||||         .|     |||    |||  ||
BL02074          441 ------TGATGAGTATTGGG---------GAGGGGCCAGCCGTTTT--TT    473

BSNT_00921___    494 CA--AAAGGTTTTGGATTTGCCGTATTACATGGCAATCA--TGTAGT---    536
                     .|  ||.|||||.||.|||...||.||.|||||     |  |||.||   
BL02074          474 GAAGAACGGTTTCGGGTTTAAAGTGTTGCATGG-----AGGTGTGGTCGC    518

BSNT_00921___    537 AAGTGAGTGT---ACCTCTATATTTTTAGGGCATAATCG---AGCGGAAA    580
                     |||.||.|||   |||     ||||||.|..|..|| ||   .||.|||.
BL02074          519 AAGCGAATGTGTCACC-----ATTTTTTGTTCGGAA-CGCTTTGCCGAAG    562

BSNT_00921___    581 TGGATATCTATACACTTGAGGAATATAGAGGACTGGGGTTAGC-------    623
                     |.||||||...||||....|||.||.||.||.|.|||.||.||       
BL02074          563 TTGATATCGCAACACACCCGGATTACAGGGGGCGGGGATTTGCAGTCAGC    612

BSNT_00921___    624 -------------TTATTGCGTA-GCAAATAAGTTTATAGCGTTTTGTAT    659
                                  ||||.||..| ||||..|||    .|.|||||     
BL02074          613 TGCGCCAGCGCCTTTATCGCACATGCAATAAAG----AACCGTTT-----    653

BSNT_00921___    660 GGAAAATGGGATTGTTCCTAGCTGGGATTGTGATATCTGCAACAATTCGT    709
                      ||||           ||..|.||||||||.|  |.|.|||  ||..||.
BL02074          654 -GAAA-----------CCGCGTTGGGATTGCG--ACCGGCA--AAACCGC    687

BSNT_00921___    710 CCATTGCAT-----TAGCAGCTAAACTAGGGTTTAAGCCGATAACGG--A    752
                     .|||.| ||     |.||.|..|||.||||.|||    ||  |.|.|  |
BL02074          688 GCATCG-ATCCGCCTCGCTGAAAAATTAGGTTTT----CG--ACCTGTCA    730

BSNT_00921___    753 ATAC--ACTATTTACTACTCTGGCTAA------    777
                     |.||  |.|.||||.|..|| ||..||      
BL02074          731 AAACTTATTCTTTATTTGTC-GGAAAACCGTGA    762


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