Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03819 and BL02078

See Amino acid alignment / Visit BSNT_03819 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:53
# Commandline: needle
#    -asequence dna-align/BSNT_03819___yqeH.1.5803.seq
#    -bsequence dna-align/BL02078___yqeH.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03819___yqeH-BL02078___yqeH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03819___yqeH-BL02078___yqeH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03819___yqeH
# 2: BL02078___yqeH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1114
# Identity:     839/1114 (75.3%)
# Similarity:   839/1114 (75.3%)
# Gaps:          26/1114 ( 2.3%)
# Score: 3091.0
# 
#
#=======================================

BSNT_03819___      1 ATGGAAAAGGTTGTTTGTATCGGGTGCGGAGTTACGATCCAAACCGAGGA     50
                     |||||||||||.|||||||||||.||||||||..|.||.||||||||.||
BL02078___yqe      1 ATGGAAAAGGTAGTTTGTATCGGATGCGGAGTCGCCATTCAAACCGAAGA     50

BSNT_03819___     51 CA-----AAACAGGTTTGGGGTACGCGCCGCCTGCATCGC--TTACGAAA     93
                     .|     ||||     ||||.||.|||||....|||||||  |||  |||
BL02078___yqe     51 TAAAAATAAAC-----TGGGCTATGCGCCTGAAGCATCGCTGTTA--AAA     93

BSNT_03819___     94 GAAAATGTGATTTGCCAGCGTTGCTTCAGACTGAAAAACTATAATGAAAT    143
                     |||.|.||.||.||||||||.|||||||||.|||||||.|||||.|||||
BL02078___yqe     94 GAAGACGTCATCTGCCAGCGCTGCTTCAGATTGAAAAATTATAACGAAAT    143

BSNT_03819___    144 ACAAGATGTCTCCTTAACTGATGATGATTTTTTGAACATTCTTCACGGTA    193
                     .||||||||.||..|.||.||.|||||.||||||||.|||||.|||||.|
BL02078___yqe    144 TCAAGATGTTTCACTGACGGACGATGACTTTTTGAAGATTCTGCACGGCA    193

BSNT_03819___    194 TTGGAGAAACGGACTCTCTTGTCGTAAAAATTGTTGATATTTTTGATTTT    243
                     |.||.||||||||.||.||..||||.|||||.||.||.||.||||||||.
BL02078___yqe    194 TCGGGGAAACGGATTCACTCATCGTGAAAATCGTCGACATCTTTGATTTC    243

BSNT_03819___    244 AACGGCAGCTGGATTAATGGGCTGCAGCGCTTGGTGGGGGGAAACCCTAT    293
                     |||||.||||||||.||.||.|||.|.|||||.||.||.||.||.||.||
BL02078___yqe    244 AACGGAAGCTGGATCAACGGACTGAACCGCTTTGTCGGAGGTAATCCGAT    293

BSNT_03819___    294 CTTATTAGTTGGCAATAAAGCGGATATTTTGCCTAAGTCACTGAAAAGAG    343
                     |||||||.|.||.||.|||||.||||||.|.|||||.|||.|.||..|.|
BL02078___yqe    294 CTTATTAATAGGAAACAAAGCAGATATTCTCCCTAAATCAGTCAAGCGCG    343

BSNT_03819___    344 AGCGTCTGATCCAATGGATGAAGCGTGAAGCGAAAGAGCTTGGCTTAAAA    393
                     ||||.||..|..|.|||||||||||.||.|||||||||||||||||||..
BL02078___yqe    344 AGCGCCTTGTAAACTGGATGAAGCGCGAGGCGAAAGAGCTTGGCTTAAGG    393

BSNT_03819___    394 CCGGTTGACGTATTTTTGGTCAGTGCGGGACGCGGCCAGGGAATAAGAGA    443
                     ||.|||||.||..|..|.|||||.||.||.|||||.|||||.||.|.|||
BL02078___yqe    394 CCTGTTGATGTGCTGCTCGTCAGCGCCGGGCGCGGGCAGGGGATGAAAGA    443

BSNT_03819___    444 AGTAATTGACGCGATTGAGCATTACCG-CAACGGAAAAGACGTCTATGTT    492
                     .|..||.||||||||.||.||||||.| ||| ||.||.|||||.|||||.
BL02078___yqe    444 TGCGATCGACGCGATCGAACATTACAGACAA-GGCAAGGACGTGTATGTC    492

BSNT_03819___    493 GTCGGATGTACAAATGTAGGAAAGTCAACCTTTATTAACCGGATTATTAA    542
                     |||||||||||.||.||.||.||.|||||.||.||.||||||||||||||
BL02078___yqe    493 GTCGGATGTACGAACGTCGGGAAATCAACGTTCATCAACCGGATTATTAA    542

BSNT_03819___    543 AGAAGTGTCAGGTGAAGAAGATATTATTACAACATCCCAATTTCCTGGCA    592
                     |||.||.||.||.|||||.||.|||||.||.||||||||||.|||.||.|
BL02078___yqe    543 AGAGGTTTCCGGAGAAGACGACATTATCACGACATCCCAATATCCGGGGA    592

BSNT_03819___    593 CAACCCTTGATGCGATTGAAATCCCGCTGGATGACGGTTCATCGCTTTAT    642
                     |.||.||||||||||||||||||||.||||||||.||.||..||.|.|||
BL02078___yqe    593 CGACGCTTGATGCGATTGAAATCCCTCTGGATGATGGATCTGCGATGTAT    642

BSNT_03819___    643 GATACACCGGGAATTATCAACAACCATCAAATGGCGCATTATGTCAATAA    692
                     |||||.||||||||.||||||.|.||||||||||||||.||||||...||
BL02078___yqe    643 GATACGCCGGGAATCATCAACCATCATCAAATGGCGCACTATGTCGCGAA    692

BSNT_03819___    693 AAAGGATCTGAAAATATTATCTCCTAAAAAGGAGCTGAAGCCTCGCACAT    742
                     |...||||||||||||||..|.||.||.||||||||||||||.|||||.|
BL02078___yqe    693 ACGCGATCTGAAAATATTGACGCCGAAGAAGGAGCTGAAGCCGCGCACCT    742

BSNT_03819___    743 TCCAGCTTAATGATCAGCAAACACTGTATTTTGGCGGACTTGCAAGGTTT    792
                     |.|||||.||.||..|.||.||.||||.|||.||||||.|..|..|||||
BL02078___yqe    743 TTCAGCTGAACGAGGAACAGACGCTGTTTTTCGGCGGATTATCGCGGTTT    792

BSNT_03819___    793 GATTATGTGTCTGGGGAAAGATCTCCTTTTATTTGCTATATGCCGAATGA    842
                     |||||||.....||.|..||.|||.|.|||.|.|||||||||||||||||
BL02078___yqe    793 GATTATGCAAGCGGAGGCAGGTCTTCGTTTGTATGCTATATGCCGAATGA    842

BSNT_03819___    843 GCTGATGATTCATAGAACAAAACTTGAAAATGCAGACGCGCTTTATGAAA    892
                     .||.|.|||.|||||||||||.||||||||.||.||...|||.|||||||
BL02078___yqe    843 ACTCAAGATCCATAGAACAAAGCTTGAAAACGCGGATCAGCTGTATGAAA    892

BSNT_03819___    893 AGCATGCAGGGGAATTGCTCACACCTCCGGGTAAAGATGAAATGGATGAG    942
                     ||||.||.||||||.||||..|.||.||.|..|||||.||..|.||...|
BL02078___yqe    893 AGCACGCTGGGGAAATGCTTGCTCCCCCTGCAAAAGAAGATCTTGACTCG    942

BSNT_03819___    943 TTTCCGGAATTGGTCGCCCATACGTTTACGATAAAAGA--CAAAAAGACA    990
                     |||||||...|.|||...||||||||||||||.|||||  |.|||  ||.
BL02078___yqe    943 TTTCCGGCGCTTGTCAAACATACGTTTACGATTAAAGAGCCGAAA--ACG    990

BSNT_03819___    991 GATATCGTTTTCTCTGGGTTAGGCTGGGTTACTGTCCATGACGC---CGA   1037
                     ||..|.||.|||||.||..|.||||||||.||.|||||.|..||   |.|
BL02078___yqe    991 GACGTTGTGTTCTCGGGCCTTGGCTGGGTAACGGTCCAGGGGGCAAACCA   1040

BSNT_03819___   1038 TAAAAAGGTAACTGCATACGCGCCAAAAGGCGTTCATGTATTTGTTCGGC   1087
                     .||||..||   .||..||||.||.|||||||||||.||.|||.|.||..
BL02078___yqe   1041 AAAAATTGT---CGCCCACGCCCCTAAAGGCGTTCACGTGTTTTTGCGCA   1087

BSNT_03819___   1088 GTTCATTAATTTAA   1101
                     |.||..||||.|||
BL02078___yqe   1088 GATCTCTAATATAA   1101


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