Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03813 and BL02084

See Amino acid alignment / Visit BSNT_03813 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:52
# Commandline: needle
#    -asequence dna-align/BSNT_03813___yqeM.1.5803.seq
#    -bsequence dna-align/BL02084.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03813___yqeM-BL02084.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03813___yqeM-BL02084.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03813___yqeM
# 2: BL02084
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 799
# Identity:     530/799 (66.3%)
# Similarity:   530/799 (66.3%)
# Gaps:          98/799 (12.3%)
# Score: 1594.0
# 
#
#=======================================

BSNT_03813___      1 ATGATTTATCAAGGCTTTGCAAGTGTGTATGACGAGTTAATGTCACACGC     50
                     |||||.|||.||||.|||.|.|||.|.||||||.||.|.|||||.||.||
BL02084            1 ATGATCTATAAAGGATTTTCCAGTATTTATGACAAGCTGATGTCTCATGC     50

BSNT_03813___     51 GCCTTACGATCAATGGACAAATTGGATTGAAGCATCTCTC------CCGG     94
                     .|||||||||||.|||...|..|||||||||..|.|..||      |.|.
BL02084           51 TCCTTACGATCAGTGGGTCAGCTGGATTGAACAAACGATCGGCGCGCAGC    100

BSNT_03813___     95 AAAAAGGCCGTA------TTCTCGATCTGGCATGCGGCACGGGGGAAATC    138
                     |.||||..||||      |.||.||||||||.|||||.|||||.|||||.
BL02084          101 AGAAAGAACGTATACGGGTGCTTGATCTGGCGTGCGGAACGGGTGAAATA    150

BSNT_03813___    139 TCCATCCGGCTTGCCGAAAAAGGCTTCGAGGTTACAGGCATCGATCTCAG    188
                     ||..||||.||.||.||||||||||..||.||.|||||.||||||.||||
BL02084          151 TCTGTCCGCCTGGCTGAAAAAGGCTATGATGTCACAGGAATCGATATCAG    200

BSNT_03813___    189 CGAAGAGATGCTTTCTTTCGCCCAGCAAAAGGTATCGAGT-AGCCAGC-C    236
                     ||||||.||||||.|....||||||.|.||.|.|.| .|| ||.|||| |
BL02084          201 CGAAGACATGCTTGCCCAGGCCCAGTACAAAGCAGC-CGTCAGGCAGCTC    249

BSNT_03813___    237 TAT-TTTATTTC-TTCAGCAGGATATGAGAGAGATTACCGGCTTTG-ATG    283
                     .|| ||.|.||| ||||||||||||||.|.||..||.||||    | |.|
BL02084          250 GATATTCAGTTCTTTCAGCAGGATATGCGCGAACTTGCCGG----GCACG    295

BSNT_03813___    284 GTC---AGTTTGACGCTGTTGTGATATGCTGTGACTCATTAAATTATTTA    330
                     |.|   ||||||||||.||||.|||.|||||||||||..|.||||||.||
BL02084          296 GACAAGAGTTTGACGCGGTTGCGATCTGCTGTGACTCGCTGAATTATCTA    345

BSNT_03813___    331 AA-AACAAAAAATGATGTGATCGAAACCTTTAACAGTGTTTTTCGGGTAT    379
                     || |.|.||||| ||.||..||.|.||.|||||.|..||||||....|||
BL02084          346 AAGAGCGAAAAA-GACGTTTTCAATACTTTTAAAAACGTTTTTTCTCTAT    394

BSNT_03813___    380 TAAAGTCTGAAGGC---ATACTGCTGTTTGATGTTCATTCATCTTTT--A    424
                     ||||   .||.|||   .|.||.|||||||||||||||||  |.|||  |
BL02084          395 TAAA---AGAGGGCGGTCTTCTTCTGTTTGATGTTCATTC--CGTTTACA    439

BSNT_03813___    425 AAATTGCGGAAGTC---TTTCCGGATAGCACATTTGCTGACCAGGACGAA    471
                     ||||   |||.|||   |||||||..||.||.|.|||.||.|||||.|||
BL02084          440 AAAT---GGATGTCATTTTTCCGGGAAGTACGTATGCCGATCAGGATGAA    486

BSNT_03813___    472 GATATCAGCTATATTTGGCAGAGCTTTGCCGGAAGTGACGAGCTTTCTGT    521
                     ||..|.|||...||.|||||.||||.|||.|   |.||.|||| .||..|
BL02084          487 GAAGTGAGCGTCATCTGGCAAAGCTATGCGG---GGGAAGAGC-CTCATT    532

BSNT_03813___    522 CA----TTCATGATATGTCGTTTTTTGTGTGGAACGGAGAAGCGTAT--G    565
                     ||    ||||.|||.||.|.||.|||||....||..||||  |||||  |
BL02084          533 CAGCTGTTCACGATTTGACCTTCTTTGTACAAAATAGAGA--CGTATACG    580

BSNT_03813___    566 ATCGTTTTGATGAGACACACGAGCAAAGAACGTTCCCGGTGGAAGAATAC    615
                     |..|.||||||||..|.||.||.||..|.||.||||.|..||||.|.|||
BL02084          581 AAAGGTTTGATGAATCGCATGAACAGCGGACTTTCCAGACGGAAAAGTAC    630

BSNT_03813___    616 GAAGAAAT--GCTTAAGAACTGCGGC--------TTTCAGCTCCATCGCG    655
                           ||  |.||    |.||||||        |||.||.|.||..||.
BL02084          631 ------ATCAGTTT----ATTGCGGCAAGCCGGATTTGAGGTGCAGTGCA    670

BSNT_03813___    656 TGACAGCTGATTTTAC------GGATACCGAGCCATCAGCACAATCAGAA    699
                     |.|..|||||||||.|      ||| .||.|||     |||.|.||.|||
BL02084          671 TCAGTGCTGATTTTTCAAAATTGGA-GCCTAGC-----GCAGAGTCGGAA    714

BSNT_03813___    700 CGCCTCTTTTT----CAAGGCGCAGAAATCAAAAACCATCGTTTCCTAA    744
                     ||  ||.||||    ||  ||..|.|||.||||||||||||||   |||
BL02084          715 CG--TCATTTTTATACA--GCAAAAAAAACAAAAACCATCGTT---TAA    756


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