Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04797 and BL02123
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:01
# Commandline: needle
# -asequence dna-align/BSNT_04797___pucR.1.5803.seq
# -bsequence dna-align/BL02123___pucR.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04797___pucR-BL02123___pucR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04797___pucR-BL02123___pucR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04797___pucR
# 2: BL02123___pucR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1721
# Identity: 1103/1721 (64.1%)
# Similarity: 1103/1721 (64.1%)
# Gaps: 247/1721 (14.4%)
# Score: 3351.0
#
#
#=======================================
BSNT_04797___ 1 ATGAATATTTTTGATGTGATGAAAATACCGGCTTTTGAA-----AACGCC 45
||||||||.|.|||..||||||||.|.||.|..|||.|| |||||
BL02123___puc 1 ATGAATATCTATGACATGATGAAACTCCCTGTATTTAAAGGCGCAACGC- 49
BSNT_04797___ 46 AATTTAATCGCTGGAAAAGCAGGAG------GGGAAAGAGAGGTTCAGCA 89
|...|||||||||.||.||.| ||.|.| ||.|.||
BL02123___puc 50 ----TTGCCGCTGGAAAGGCGGGCGTAACCCGGAACA------TTGAACA 89
BSNT_04797___ 90 TGTCAATATGATGGACGCTCCGGATATCGCAGACTTTTTGCATAAGAATG 139
..|||||||||||||.||.||.|||||.||.||.|.|.|||||.|....|
BL02123___puc 90 CATCAATATGATGGATGCGCCAGATATTGCCGATTATCTGCATCATGGCG 139
BSNT_04797___ 140 AATTGCTCGTCACCACCGCCTATCACCTGAAGGATCACCCGCATCAATTA 189
||.|.||||||||.|||||.||.||..|.||.| |||.||.|...|||
BL02123___puc 140 AACTCCTCGTCACGACCGCATACCATTTAAAAG---ACCGGCCTTTTTTA 186
BSNT_04797___ 190 TCT----GAACTGATTCGGCAA--ATGGCAAAACGCGGCTGCGCGGGCCT 233
| | |||.||||| |.|| |||...|..||.||||||||.||.||
BL02123___puc 187 T-TGAAGGAATTGATT--GAAAGGATGATCAGGCGGGGCTGCGCCGGACT 233
BSNT_04797___ 234 CGGCATTAAAACAAAGCGCTATCTGGAAGATAT-CCCGA--AGGAAATCA 280
|||.||.||||| .||||.|.||.|.||.|| ||||| ||| |.|
BL02123___puc 234 CGGTATCAAAAC---CCGCTTTTTGCAGGAAATACCCGACGAGG---TGA 277
BSNT_04797___ 281 TCGAACTGGCCGATTCATATGCG--------TTTCCGATCATTGAACTTC 322
||.|.||.||||| || |||||||||||.||.||..
BL02123___puc 278 TCAAGCTTGCCGA--------CGAGCGGACATTTCCGATCATCGAGCTAA 319
BSNT_04797___ 323 CAGAACACATCCGCCTCGGCGATATTGTAAATGCCACACTCAGCCACATT 372
..|||.|..||||||||||.||||||||.|||...|||||.|||||.|||
BL02123___puc 320 ATGAAGATGTCCGCCTCGGTGATATTGTCAATCATACACTGAGCCATATT 369
BSNT_04797___ 373 CTCGATATGCGTTCTAACGAGCTGCAG--------CAAGCCATTTACGCG 414
||.|| |.||||..|.|||| ||.|||||...|||.
BL02123___puc 370 CTAGA--------CAAACGGACGGCAGAACTCGAACAGGCCATCGCCGCT 411
BSNT_04797___ 415 CACAAAAAATTCACAAACCACATTATGAGCGGCAAGGGGCTGCAATCCCT 464
||.|||||.|||||||.|||.|||||||||||.||..|..|.|||||.||
BL02123___puc 412 CAAAAAAAGTTCACAAGCCATATTATGAGCGGAAAAAGCATTCAATCGCT 461
BSNT_04797___ 465 CCTCAAAAAGGTGTCAGACCTCCTT--CAGCTTCCCGTGCTGCTGCTTGA 512
|.|..|.||.||.||.| ||..|| .||||||||||.||.||..|..|
BL02123___puc 462 CTTGCATAACGTCTCTG--CTGTTTTAAAGCTTCCCGTTCTTCTATTCAA 509
BSNT_04797___ 513 CCAGCA------------TGCC------AAA----ATGCTGTC----CGC 536
.||||| |||| ||| ||||.|.| |||
BL02123___puc 510 TCAGCACCTCAAGCCGATTGCCTCCTCAAAAGCAGATGCCGCCGGGACGC 559
BSNT_04797___ 537 -GTCTCAT--------CAGATTTCAGTTGAGACCGAAAAGCTGAAAGGCA 577
|||..|| .|.|||||| ||||| ||||
BL02123___puc 560 TGTCGGATTATGAAGGAATATTTCA----------AAAAG--GAAA---- 593
BSNT_04797___ 578 CCCTGAATACCGTATCCGGGCCATTTTTCACTTGTTTCTCTACAATCTCA 627
|.||| ||||.| ||||.|||||.||.||.||..|.
BL02123___puc 594 --CAGAA---------CGGGGC-----TCACCTGTTTTTCAACGATTCCC 627
BSNT_04797___ 628 GATCAGA-AAACATATTCTGTCCTGCCTATTTATAATCACGAAAAAAACT 676
|| ||.| ||||.|||||.||..|.||.||.||||.|||.||||||||.|
BL02123___puc 628 GA-CAAACAAACCTATTCGGTATTTCCGATCTATACTCATGAAAAAAAAT 676
BSNT_04797___ 677 GCGGATACCT-----GCTGATACCGGACATG--GTCCAGGCCGGC-GATA 718
||||.|.||| .||| ||| .||| .||| ||..| ||.|
BL02123___puc 677 GCGGCTTCCTCGTTGTCTG----CGG-GATGATTTCC---CCTTCAGACA 718
BSNT_04797___ 719 AAGGATTGATCCTCACGATTGAACAAGCGGCCAACGTCATTTCCTTTGAA 768
||||.|||.|..|.||..|.||||||||.|||||.|||||..|||||||.
BL02123___puc 719 AAGGCTTGCTGTTAACCCTCGAACAAGCCGCCAATGTCATCGCCTTTGAG 768
BSNT_04797___ 769 CTGCTGAAGGAAAATGCGCTGAAGCAGT-TCAGCCGGCGGGCCCGCAATG 817
||||||||||||||||||||.||.||.| |..| ||..|.||.||.||.|
BL02123___puc 769 CTGCTGAAGGAAAATGCGCTCAAACAATATTTG-CGAAGAGCGCGGAACG 817
BSNT_04797___ 818 AGTTTTTCAGCAATTTTATTGA--GCGGTCCTTTTCTTCAGATGACGAAA 865
||||||||||.||||||.|.|| ||| |||||||.||.|.|||.||||
BL02123___puc 818 AGTTTTTCAGAAATTTTTTGGACGGCG--CCTTTTCCTCTGCTGAAGAAA 865
BSNT_04797___ 866 TCAAAAACCGGGCGAAAGAATTCAAGCTGCGCTGGGATCAAAAATACATG 915
|.||||||||.||.||||||||..||||....||||||||||||||..||
BL02123___puc 866 TTAAAAACCGAGCAAAAGAATTTCAGCTCAAGTGGGATCAAAAATATGTG 915
BSNT_04797___ 916 TGCATTGCCGGCAAACTCGATCGCAATGACGAATCAATCAGCTTTACAGA 965
|||||.|||||||||.|.||.|||...||..||||..|||||||.||.||
BL02123___puc 916 TGCATCGCCGGCAAATTGGACCGCCGCGAAAAATCGCTCAGCTTCACGGA 965
BSNT_04797___ 966 AAATCAGCTCGCTTCCGACAGCGTATTCGAATTTCTTGAAGGTGA----A 1011
|||||||||.|..||.||...|||.||||||...||.||||..|| .
BL02123___puc 966 AAATCAGCTTGAATCAGATTCCGTGTTCGAACGCCTGGAAGAAGAGCTGG 1015
BSNT_04797___ 1012 TTATCAGCCTTCCCGTTTCCGCCTCACTTCTTTATGAAAGGAAATGTCGG 1061
|| |.||||||||||||.||.|||.|.||.|..||||||||..|..|
BL02123___puc 1016 TT----GACTTCCCGTTTCCTCCGCACCTTTTCACAAAAGGAAACATATG 1061
BSNT_04797___ 1062 CATTATTCTAATCGAGGCGACAGACAGCTGGAGTGAAATGCACGCCTCGG 1111
|.|..|.||...|||||||||.|||||||||..|||||||.|.||..|.|
BL02123___puc 1062 CTTCCTGCTGGCCGAGGCGACGGACAGCTGGGCTGAAATGAATGCAGCCG 1111
BSNT_04797___ 1112 TGATCAGCTTTTTAGAACAGTTTCAAACACAGGTCAGCGC---------- 1151
||..|.|.||||||.|...||| |||||||
BL02123___puc 1112 TGGGCGGATTTTTAAAGGCGTT-----------TCAGCGCCATGCATCTG 1150
BSNT_04797___ 1152 -TCAATTTAAACGAACCGTGTCCTTTGGCATCAGCAATATCTGCCAAAAG 1200
.||.|||.|.||.||..|.||.|||||.||||||||..||.||||..||
BL02123___puc 1151 AGCATTTTCAGCGGACGATTTCTTTTGGAATCAGCAACCTCAGCCATCAG 1200
BSNT_04797___ 1201 CTCATTGATGTTCCCGACGCTTTCACAGAAG-CTTCTGATGCTCTGCAAT 1249
||.|..||.|||||..||..||.||.||||| |.|| |||||.||.||.|
BL02123___puc 1201 CTGAGAGACGTTCCGCACATTTGCAAAGAAGCCGTC-GATGCGCTCCACT 1249
BSNT_04797___ 1250 CGGGGCATTTGTCGAGAAGCACCGCATTTATCCAGGTGTATCACGCCAAA 1299
|.||.||||||||..|.|||||||..||.||||||..|||.||....|||
BL02123___puc 1250 CCGGCCATTTGTCAGGCAGCACCGAGTTCATCCAGACGTACCATATGAAA 1299
BSNT_04797___ 1300 GATGTGCCTGAGCTTCTGCGCTTGCTCCCGGTTGAGGATTTGAAGAAATT 1349
||.|||.|.||||||.|||||.||.|.||||.|||.||||||||||.|||
BL02123___puc 1300 GACGTGTCAGAGCTTTTGCGCATGATTCCGGCTGATGATTTGAAGACATT 1349
BSNT_04797___ 1350 TTACAACTC-CA--CGCT---TCAG------AGCCTCGCTGAAAAACAGC 1387
||||| | || |||| |||| ||||| ||.||
BL02123___puc 1350 TTACA---CGCATGCGCTGCATCAGCTTGCCAGCCT-GCCGA-------- 1387
BSNT_04797___ 1388 AGGAGGATCAAAGCCTGCTTCATACGCTTTCCGTCTATTTAGAGACACAC 1437
||||.||.|.|.|.||.||.||.||..|.|||||||||.|.||.||.|||
BL02123___puc 1388 AGGATGACCCAGGGCTCCTGCAAACATTGTCCGTCTATCTGGAAACGCAC 1437
BSNT_04797___ 1438 TGCCAAATTTCAGAGACGGCAAAGCGTCTGTACGTTCATCGCAATACGGT 1487
||.||.|||||.||.|||||.|||||.||||||.|.||..|.||.||.||
BL02123___puc 1438 TGTCAGATTTCTGAAACGGCCAAGCGCCTGTACATCCACAGAAACACCGT 1487
BSNT_04797___ 1488 CATATACCGCCTTGAAAAATGCGAAGAGCTTCTGGGTAAAAGCTTAAAAG 1537
|||.|||.|.||||||||||||||.||.||.||.||.||||||.|.||||
BL02123___puc 1488 CATCTACAGGCTTGAAAAATGCGAGGAACTGCTCGGGAAAAGCCTGAAAG 1537
BSNT_04797___ 1538 ATCCTGAAACAACGATGCGTTTGCGGCTTGC-CTTACGTATGCA---GCG 1583
||.|.||.||.||..||||.|||.|.||.|| ||.| |.||.|| ||.
BL02123___puc 1538 ATGCGGACACGACCTTGCGCTTGAGACTCGCGCTCA-GAATTCAAATGCT 1586
BSNT_04797___ 1584 GC--------TGATCAGCTAA 1596
|| |||
BL02123___puc 1587 GCTTGGGTTGTGA-------- 1599
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