Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04770 and BL02134
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:59
# Commandline: needle
# -asequence dna-align/BSNT_04770___yuxL.1.5803.seq
# -bsequence dna-align/BL02134___yuxL.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04770___yuxL-BL02134___yuxL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04770___yuxL-BL02134___yuxL.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04770___yuxL
# 2: BL02134___yuxL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2099
# Identity: 1365/2099 (65.0%)
# Similarity: 1365/2099 (65.0%)
# Gaps: 262/2099 (12.5%)
# Score: 3932.0
#
#
#=======================================
BSNT_04770___ 1 ATGAAAAAGCTGATAACCG---CAGACGACATCACAGCGATTGTCTCTGT 47
|||||..|||||||||||| .||||..||||| ||| ||||.||..|
BL02134___yux 1 ATGAAGCAGCTGATAACCGAAAAAGACCTCATCA-AGC--TTGTATCCAT 47
BSNT_04770___ 48 GACAGATCCTCA--ATACGCCCCAGACGGCACCCGTGC------CGCATA 89
.||.|||||.|| ||.||||| ||.| |||| |||.||
BL02134___yux 48 TACCGATCCCCAGTATTCGCCC--GATG------GTGCAAAAATCGCCTA 89
BSNT_04770___ 90 TGTAAAATCACAAGTGAATCAAGAGAAAGATTCGTATACATCAAATAT-A 138
.||..||.||.||||.||..||.|..|.||.||.|||...||..|||| |
BL02134___yux 90 CGTCCAAACAAAAGTAAACGAAAAACAGGACTCATATGATTCGCATATCA 139
BSNT_04770___ 139 TGGATCTATGAAACG---AAAACGGGCGGGTCTGTTCCTTGGACACATGG 185
| ||||||.| |.|| |||||..|| .||.||.|..|||||...|||
BL02134___yux 140 T-GATCTACG-ACCGCGAAAAACAAGC--TTCGGTGCAATGGACGTTTGG 185
BSNT_04770___ 186 AGAAAAGC-GA----AGCACCGACCCAAGATGGTCTCCGGACGGGTGC-- 228
||||.|| || ||||.| ||| |.|||||.||||||| ||
BL02134___yux 186 -GAAAGGCAGAAACCAGCATC--CCC--GCTGGTCGCCGGACG---GCAA 227
BSNT_04770___ 229 --ACGCTTGCCTTTATTTCTGATCGAGAAGGCGATGCGGCACAGCTGTAT 276
|| |||||.||||..||..||||.|| .||..|.|||||..|.||.
BL02134___yux 228 ATAC-CTTGCATTTACGTCCAATCGCGA---GGAAACCGCACAAATTTAC 273
BSNT_04770___ 277 ATGATGAGCGCTGAAGGCGGAGAAGCGAGAAAACTGACTGATATCCCGTA 326
.||||.|||||.|..||.|||||||||||||||.||||.|||||.||.||
BL02134___yux 274 GTGATAAGCGCCGCCGGGGGAGAAGCGAGAAAAGTGACCGATATTCCCTA 323
BSNT_04770___ 327 TGGCGTGTCAAAGCCAATATGGTCCCCGGATGGCGAATCGATTCTGGTCA 376
||..||.|||.||||...||||||.|||||.|||.| ||||
BL02134___yux 324 TGATGTATCACAGCCTGAATGGTCGCCGGACGGCAA----------GTCA 363
BSNT_04770___ 377 CTG------TCAGTTTGGGAG------AGGGAGGAAA-CATTGATGACCG 413
.|| ||||| |.|| |..||||||| |.|.||.|| .|
BL02134___yux 364 TTGCTTTGTTCAGT---GAAGCTGACAAAAGAGGAAAGCGTCGACGA-TG 409
BSNT_04770___ 414 AGAA-AAAACAGAGCAGGACAG-CTATGAACCTGTTGAAGTGCAAGGC-C 460
|||| |||||.|||...|| || |.|.|||||..|.||||| |.|..| .
BL02134___yux 410 AGAAGAAAACCGAGATTGA-AGACCACGAACCGCTGGAAGT-CGATTCTT 457
BSNT_04770___ 461 TCTCCTACAAACGGGACGGCAAAGGGCTGACGAGAGGTGCGTATGCCCAG 510
|.||.||.|||...||||||.|||||.|.|..||.||...||||.|.|||
BL02134___yux 458 TGTCATATAAAGCAGACGGCCAAGGGTTTAAAAGGGGAAAGTATACGCAG 507
BSNT_04770___ 511 CTTGTGCTTGTCAGCGTAAAGT------CGGGTGAGATGAAAGAGCTGAC 554
|||||.||.|| |.|||| |||| ||.||||||.|||||||
BL02134___yux 508 CTTGTCCTCGT-----TCAAGTGGAAACCGGG-GAAATGAAACAGCTGAC 551
BSNT_04770___ 555 AAGTC-ACAAAGCTGATCATGGTGATCC-TGCTTTTTCTCC-TGACGG-- 599
...|| ..||.|| ||.||| .|.|.|| |||.|||||.|| || |||
BL02134___yux 552 CGATCTTGAACGC-GACCAT-TTCAGCCATGCATTTTCACCGTG-CGGAG 598
BSNT_04770___ 600 --CAAATGGCTTGTTTTCTCAGCTAATTTAACTGAAACAGATGATGCCAG 647
||.||.||.| |||.| ||.|| |.||||.||| ||||..|
BL02134___yux 599 ATCAGATTGCAT-TTTGC---GCCAA------TCAAACGGAT-ATGCGTG 637
BSNT_04770___ 648 CAAGCCGCATGATGTTTACATAATGTCACTGGAGTCTGGAGATCTTAAGC 697
.|.|.|||||.|||.|.|||...||...|.|.||.|||.|.||||
BL02134___yux 638 -----TGAACGATGTCTACTTGATGAACCTTTCGACAGGTGATTTGAAGC 682
BSNT_04770___ 698 AGGTTACACCTCATCGCGGC--TCATTCGGATCAAGCTCATTTTCACCAG 745
...|.|||..|||...|||| |..||| .|||...||.|||||.||.|
BL02134___yux 683 GCCTCACAGGTCAAAACGGCATTTTTTC--TTCACTATCGTTTTCTCCTG 730
BSNT_04770___ 746 ACGGAAGGTATCTTGCTTTGCTTGGAAATGAAAAGGAATATAAGAATGCT 795
||||.|...|.|||||.||..|.|||||.||.||.||||||.|.||.||.
BL02134___yux 731 ACGGCAAACACCTTGCATTTATCGGAAACGAGAAAGAATATCAAAACGCC 780
BSNT_04770___ 796 ACGCTCTCAAAGGCGTGGCTCTATGATATCGAACAAGGCCGCCTCACATG 845
||||||...||.||.|||||.||||||||.|||..|||....||.||.||
BL02134___yux 781 ACGCTCGATAAAGCATGGCTGTATGATATTGAAACAGGAAAACTAACGTG 830
BSNT_04770___ 846 TCTTACTGAGATGCTGGACGTTCAT-TTAGCGGATGCGCTGATTGGAGAT 894
|||.||.||.|||||.|||||.||| |.||| ||||||.||...|||||
BL02134___yux 831 TCTGACGGAAATGCTTGACGTCCATCTCAGC-GATGCGGTGGCAGGAGA- 878
BSNT_04770___ 895 TCA---TTGATCGGTGG-----TGCTGAACAGCGCCCGATTTGGACAAAG 936
|| ||| ||||.|| |.|.||| |.||.|| |||||.||.
BL02134___yux 879 -CAGCCTTG-TCGGAGGCGTTCTTCCGAA-ACCGGCC----TGGACCAAA 921
BSNT_04770___ 937 GACAGCCAAGGGTTTTATGTCATCGGCACAGATCAAGGCAGTACGGGCAT 986
|||.|..|.||.||||||||||||||..|.||.||.||...|||.|||||
BL02134___yux 922 GACGGAAACGGCTTTTATGTCATCGGATCTGACCAGGGTTCTACAGGCAT 971
BSNT_04770___ 987 CTATTATATTTCGATTGAAGGCCTTGTGTATCCGATTCGTCTGGAAAAAG 1036
.||.||.||.||.||.|||||.||||..||||||.|.||..|||||||||
BL02134___yux 972 TTACTACATATCAATCGAAGGTCTTGCTTATCCGGTCCGGTTGGAAAAAG 1021
BSNT_04770___ 1037 AGTACATCAATAGCTTTTCTCTTTCA--------CCTGATGAA------- 1071
||.|..|.|| |...|||| ||.||.|||
BL02134___yux 1022 AGCATGTGAA--------CGGATTCAGCCTGCATCCGGACGAAAGTGGCT 1063
BSNT_04770___ 1072 ---CAGCACTTTAT-----TGCCAGTGTGACAAAGCCGGACAGACCGAGT 1113
|.||| |..|| ||||.|| |||| |||||.
BL02134___yux 1064 TTGCGGCA-TCCATAGCCCTGCCCGT---------CCGG-----CCGAGC 1098
BSNT_04770___ 1114 GAGCTTTACAGTATC-CCGCTTGGACAG-GAAGAGAAACAGCTGACTGGC 1161
||.|||||| .||| ||..|||| | || |||||.||| ||.
BL02134___yux 1099 GAACTTTAC--CATCTCCAATTGG---GTGA--AGAAAAAGC-----GGA 1136
BSNT_04770___ 1162 GCGA-------ATGACAA------GTTTGTCAGG---GAGCATACGATAT 1195
|||| |||.||| |||| |.| ||.||||..||||
BL02134___yux 1137 GCGACTAACAGATGCCAACCAAGCGTTT---ACGGAAGAACATATCATAT 1183
BSNT_04770___ 1196 CAATACCTGAAGAGATTCAATATGCTACAGAAGACGGCGTGATGGTGAAC 1245
|...|||.||.|||.||||||.|....|||..|||||..|||...|..||
BL02134___yux 1184 CGGAACCGGAGGAGCTTCAATTTCAGGCAGCGGACGGTCTGACAATTCAC 1233
BSNT_04770___ 1246 GGCTGGCTGATGAGGCCTGCACAA-ATGGAAGGTGAGACAACATATCCAC 1294
||.||||||||.|.|||.||.||| |||.||...||.|| ||.|||||.|
BL02134___yux 1234 GGATGGCTGATAAAGCCCGCCCAATATGAAAAAGGAAAC-ACGTATCCGC 1282
BSNT_04770___ 1295 TTATTCTTAACATACACGGCGGTCCGCATATGATGTACG-GACATACATA 1343
|.|||||..|..|.||||||||.||.||....|||||.| || ||.|.||
BL02134___yux 1283 TCATTCTGGAAGTGCACGGCGGACCTCACGCCATGTATGCGA-ATGCTTA 1331
BSNT_04770___ 1344 TTTTCATGAGTTTCAGGTGCTGGCGGCGAAAGGATACGCGGTCGTTTATA 1393
|||||||||.|||||.||||||||.||.||.|||..|||.|||||.|||.
BL02134___yux 1332 TTTTCATGAATTTCAAGTGCTGGCCGCAAAGGGAAGCGCCGTCGTATATG 1381
BSNT_04770___ 1394 TCAATCCGAGAGGAAGCCACGGCTACGGGCAGGAATTTGTGAATGCGGTC 1443
|.||.|||.|.|||||||||||||||||.|||||.|||||.||...|||.
BL02134___yux 1382 TTAACCCGCGGGGAAGCCACGGCTACGGACAGGATTTTGTCAACCGGGTG 1431
BSNT_04770___ 1444 AGAGGAGATTATGGGGGAAAGGATTATGACGATGTGATGCAGGCTGTGGA 1493
||.||.||.||.||.||....||||.|.|.|||||.|||..||||||.||
BL02134___yux 1432 AGGGGCGACTACGGCGGTGGAGATTTTAAGGATGTAATGGCGGCTGTTGA 1481
BSNT_04770___ 1494 TGA--GGCTATCAAACGAGATCCGCAT----ATT-----GATCCTAAG-- 1530
..| .||| |.|| ||| ||| |||| |||
BL02134___yux 1482 CCACGTGCT-TGAA----------CATTATGATTTCGTCGATC--AAGAA 1518
BSNT_04770___ 1531 CGGCTCGGTGTCACGGGCGGAAGCTACGGAGGTTTTATGACCAACTGGAT 1580
.|||||||..||||.||.|||||||||||.||.||||||||.||||||..
BL02134___yux 1519 AGGCTCGGCATCACCGGAGGAAGCTACGGGGGCTTTATGACAAACTGGGC 1568
BSNT_04770___ 1581 CGTCGGGCAGACGAACCGCTTTAAAGCTGCCGTTACCCAGCGCTCGATAT 1630
.|||||.||.|||||.|||||.||.||.||.||.||.|||.|.||.||.|
BL02134___yux 1569 TGTCGGCCACACGAAGCGCTTCAAGGCCGCAGTGACACAGAGGTCCATTT 1618
BSNT_04770___ 1631 CAAATTGGATCAGCTTTCACGGCGTCAGTGATATCGGCTATTTCTTTACA 1680
|.||.||||||||.|||.||||.||.||.||.|||||||||||.||.|||
BL02134___yux 1619 CCAACTGGATCAGTTTTTACGGGGTAAGCGACATCGGCTATTTTTTCACA 1668
BSNT_04770___ 1681 GACTGGCAGCT-TGAGCATGACATGTTTGAGGACACAGAAAAGCTCTGGG 1729
||||||||||| .|.||| |||.|.|||||.||..|||..||.||.||||
BL02134___yux 1669 GACTGGCAGCTCGGTGCA-GACCTTTTTGAAGATCCAGGCAAACTGTGGG 1717
BSNT_04770___ 1730 ACCGGTCTCCTTTAAAATACGCAGCAAACGTGGAGACACCGCTTTTGATA 1779
|.|..||.||..|.||||||||.|..||.||||||||.||.|||.|.||.
BL02134___yux 1718 AGCATTCGCCGCTCAAATACGCGGACAAGGTGGAGACCCCTCTTCTCATT 1767
BSNT_04770___ 1780 CTGCATGGCGAGCGGGATGACCGATGTCCGATCGAGCAGGCGGAGCAGCT 1829
|||||||||||.|||||.|||.|.||.|||||.||.||||||||.|||||
BL02134___yux 1768 CTGCATGGCGAACGGGACGACAGGTGCCCGATTGAACAGGCGGAACAGCT 1817
BSNT_04770___ 1830 GTTTATCGCTCTGAAAAAAATGGGCAAGGAAACCAAGCTTGTCCGTTTTC 1879
|||.|..||.||||||||||||||.||.|||...||.||.|||.|.||||
BL02134___yux 1818 GTTCACGGCGCTGAAAAAAATGGGGAAAGAAGTAAAACTCGTCAGATTTC 1867
BSNT_04770___ 1880 CGAATGCATCGCACAATTTGTCACGCACCGGACA-CCCAAGACAGCGGAT 1928
||||.||.||.|||.||||.|||.|.|.|||.|| ||.||| ||||||||
BL02134___yux 1868 CGAACGCGTCACACGATTTATCAAGAAGCGGGCATCCGAAG-CAGCGGAT 1916
BSNT_04770___ 1929 CAAGCGCCTGAATTATAT--CA-GCTCATGGTTTGACCAATATCTCTAA 1974
||.|||.||..|.||||| || || ||||||||....|||||.|||
BL02134___yux 1917 CAGGCGGCTTGAGTATATTGCAGGC---TGGTTTGAAGCTTATCTATAA 1962
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