Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03866 and BL02154
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:54
# Commandline: needle
# -asequence dna-align/BSNT_03866___blt.1.5803.seq
# -bsequence dna-align/BL02154___blt.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03866___blt-BL02154___blt.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03866___blt-BL02154___blt.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03866___blt
# 2: BL02154___blt
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1437
# Identity: 717/1437 (49.9%)
# Similarity: 717/1437 (49.9%)
# Gaps: 474/1437 (33.0%)
# Score: 1480.5
#
#
#=======================================
BSNT_03866___ 1 ATGAAAAAATCAATAAATGAGCAAAAAACGATAT--TCATTATACTATTA 48
||||||| |.||| ||.|.|....|||| ||||
BL02154___blt 1 ATGAAAA-------AGATG-GCCAGATTGTATATGCTCAT---------- 32
BSNT_03866___ 49 AGC--AACATCTTCGTAGCAT--TTCTTGGTATCGGTTTAATCATTCCAG 94
|| |||.|.|| ||.|.| |.||||||||.||.||.||.||||||.
BL02154___blt 33 -GCTTAACGTGTT--TATCGTGATGCTTGGTATAGGCTTGATTATTCCAC 79
BSNT_03866___ 95 TTATGCCTTCTTTTAT-GAAAATCATGCATT-----TATCCGGCAGCACA 138
|.||||||.|.||||| ||| |.||| ..||.||||||||.
BL02154___blt 80 TCATGCCTACGTTTATAGAA------GAATTCGGCGCGTCAGGCAGCACG 123
BSNT_03866___ 139 ATGGGTTATCTTGTTGCGGCTTTTGCCATTTCTCAGTTAATTACTTCACC 188
.|.||.|..||..|.|||||||..|..|||.|.|||.|..|...|||.||
BL02154___blt 124 CTCGGATTGCTGATCGCGGCTTCGGGGATTACCCAGCTGCTGTTTTCGCC 173
BSNT_03866___ 189 TTTTGCAGGTAGGTGGG--TTGACCG----TTTCGGGAGAAAAAAAATGA 232
..||||.| ||| .||||.| .|.|||.||....|||||||
BL02154___blt 174 CGTTGCCG------GGGAAATGACTGATAAATACGGAAGGCGGAAAATGA 217
BSNT_03866___ 233 TTATTCTCGG----GTTGC-TTATATTCAGTTTATCTGAGTTGATTTTCG 277
|.|||.|.|| |.||| || |.|.||| ||..||.||.||||||
BL02154___blt 218 TCATTTTAGGAATCGGTGCGTT---TGCGGTT--TCCCAGCTGCTTTTCG 262
BSNT_03866___ 278 GATTAGGGACCCA-----------TGTTTCAATATTTT----ATTTCTC- 311
..||.|.||.||| ||||| .||| ..|||||
BL02154___blt 263 CCTTGGCGAGCCAGATGTGGCTGCTGTTT-----GTTTCCCGCCTTCTCG 307
BSNT_03866___ 312 -CAGGATATTGGGTGGTATAAGTGCGGCTTTTATCATGCCCGCGGTAACA 360
| ||| |.|| |.||.||.|||.|..||||.|| ||
BL02154___blt 308 GC-GGA------GCGG-----GAGCTGCGTTTTTGGTGCCGGC-----CA 340
BSNT_03866___ 361 -----GCATATGTAGCTGATATTACAACCCTAAAGGA---AAGGTCAAAG 402
||.||..|.|||||.||.|||.|...|||||| ||| |||||
BL02154___blt 341 TGTTTGCCTACATCGCTGACATCACATCGGAAAAGGATCGAAG--CAAAG 388
BSNT_03866___ 403 GCTATGGGGTATGTTTCTGCTGCAATTAGCAC------------CGGCTT 440
| .||||| |||| ||.|||.| ||||||
BL02154___blt 389 G-GATGGG----------GCTG--ATCAGCGCCGCGATGTCTCTCGGCTT 425
BSNT_03866___ 441 TATTATTGGGCCTGGTGCGGGAGGATTTATTGCCGGCTTTGG------CA 484
|.|.||.||.||.||.||.||.||||.| |||.||||.||.| |.
BL02154___blt 426 TGTCATCGGTCCGGGAGCAGGCGGATAT-TTGGCGGCGTTCGGGCTCACC 474
BSNT_03866___ 485 TTCGCATGCCGTTTTTCTTAACCTCCGCC--ATCGCGTTAATAGCAGCTG 532
||| |||||||.|.| .||.||| || ||||.|
BL02154___blt 475 TTC-----CCGTTTTACGT---GTCAGCCGGAT--------TAGCCG--- 505
BSNT_03866___ 533 TCACTT----CCGTTTTTAT-ACTAAAAGAGTCATTGTC------GATAG 571
.||| .||.|||||| .|| || ||||| ||
BL02154___blt 506 --GCTTGGCGACGGTTTTATCGCT-------TC-TTGTCCTCCCGGA--- 542
BSNT_03866___ 572 AAGAACGCCATCAACTCTCTTCTCATACAAAGGAATCAAATTTCATTAAA 621
|||| ||||..||| || |||
BL02154___blt 543 ---AACG--------------CTCAGTCAA--GA-------------AAA 560
BSNT_03866___ 622 GA--CTTGAAGA-----GATCCATTCA----------------------- 641
|| ||||||.| |.|||.||||
BL02154___blt 561 GATGCTTGAAAAGCGCCGCTCCGTTCAAAAGCGCGAACCGCTCGCTAAGC 610
BSNT_03866___ 642 ---------------TCCTGTC----TATTTGATTGCATTT---ATTATC 669
|.|.||| || ||||||| .|||||
BL02154___blt 611 AAATGGCGCGCGCGCTGCGGTCGCCGTA------TGCATTTCTGTTTATC 654
BSNT_03866___ 670 GTCTTTGTGATGGCTTTTGGTTTATC---AGCTT-------ATGAA---- 705
.||.| |||.||| |.||| |||||
BL02154___blt 655 CTCGT--------------GTTCATCTTGAACTTCGGGATCATGAATTTC 690
BSNT_03866___ 706 ---ACGGTATTCAGCTTGTTTTCT-GATCATAAATTTGGCTTCACACCAA 751
.|||||||||||.| ||.|.| ||||||||....|||||.|||||..
BL02154___blt 691 GAGGCGGTATTCAGCCT-TTATGTCGATCATAAGCACGGCTTTACACCGG 739
BSNT_03866___ 752 AAGATATTGCAGCCATTATCA------CGATTAGTTCCAT-----TGTT- 789
.|||.||| |||.||.||| ||...|||...|| ||||
BL02154___blt 740 GAGACATT---GCCTTTGTCATAACAGCGGCAAGTCTGATCGGCGTGTTC 786
BSNT_03866___ 790 ------GCGGTAGTTATTCAAGTTTTACTATTCGGGAAATTGGTCGACAA 833
|||||.|.| .|||||| ||.| |||.|
BL02154___blt 787 GTCCAGGCGGTGGCT---------------CTCGGGA---TGCT-GACGA 817
BSNT_03866___ 834 A---CTTGGAGAGAAAAGAA--TGATTCA------GCTGTGCTTAATAAT 872
| |||.| |.|||||.|| ||||..| |||| ||
BL02154___blt 818 ACCGCTTCG-GCGAAAAAAAGCTGATGAACATGACGCTG---------AT 857
BSNT_03866___ 873 TGGTGC-----GATCTTAGCTTTCGTGTCTACT-GTTATGTCAGGATTTT 916
.|||.| ||.| ||||.| .||||.|| | ||..|.|| ||.
BL02154___blt 858 CGGTTCTGCCGGAGC---GCTTGC-CGTCTGCTCG--ATTGCCGG--TTC 899
BSNT_03866___ 917 TAACTGTTTTGCTTGT---------AAC--TTGTTTTATT-TTTCTGGCG 954
..|||| |||.|| ||| |||||||.|| .|.|||.||
BL02154___blt 900 GTACTG----GCTGGTTTTCGGGGCAACAATTGTTTTCTTCATGCTGACG 945
BSNT_03866___ 955 TTCGATTTGCTACGTCCCGC-CTTAA-CCGCTCATTTATCCAATATCGCC 1002
||.||| ||.||.||.|| .|||| .||||.||| ||.||.||.|||
BL02154___blt 946 -TCCATT--CTTCGACCGGCGATTAATACGCTGATT--TCAAAAATGGCC 990
BSNT_03866___ 1003 GGTAACCAGCAGGGTTTCGTAGCAGGCATGAACTCCACATATACCAGCCT 1052
||..|..|.|||||.||.|..||||||||||||....|.|.||..|||||
BL02154___blt 991 GGAGATGAACAGGGATTTGCCGCAGGCATGAACAATGCGTTTATGAGCCT 1040
BSNT_03866___ 1053 GGGAAATATATTTGGACCTGCTCTAGGCGGTATACTATTTGATCTTAAC- 1101
.|..||.||..|.|||||..|..|.|.||||.|..||||.|||.|.|||
BL02154___blt 1041 TGCCAACATTGTCGGACCGACAGTGGCCGGTCTGTTATTCGATGTGAACG 1090
BSNT_03866___ 1102 -----ATTCATTATCCTTTCCTTTTTGCAGGTTTCGTTATGGTTGTCGGC 1146
||||..||| .||||||..|...|||||.|.||..||.||
BL02154___blt 1091 TAGAAATTCCATAT------ATTTTTGGTGTGGTCGTTCTCGTGCTCAGC 1134
BSNT_03866___ 1147 CTT-----GGTCTTACAAT------GGTTTGGAA-------------AGA 1172
.|| || ||.| ||...|||| |.|
BL02154___blt 1135 TTTTTGGCGG-----CAGTCAGCTGGGGGCGGAAGCAGCAGGCGCGCACA 1179
BSNT_03866___ 1173 A------AAAAAGAATGATGCTGCAGCTTTGAATTAA 1203
| ||||||.||.|
BL02154___blt 1180 ATTCCTGAAAAAGTATAA------------------- 1197
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