Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04835 and BL02158
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:02
# Commandline: needle
# -asequence dna-align/BSNT_04835___yurR.1.5803.seq
# -bsequence dna-align/BL02158___yurR.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04835___yurR-BL02158___yurR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04835___yurR-BL02158___yurR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04835___yurR
# 2: BL02158___yurR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1168
# Identity: 747/1168 (64.0%)
# Similarity: 747/1168 (64.0%)
# Gaps: 173/1168 (14.8%)
# Score: 2349.0
#
#
#=======================================
BSNT_04835___ 1 ATGAAATCGTACATCATCGTCGGCGCAGGGATTCTGGGCGCGTCGACGGC 50
BL02158___yur 0 -------------------------------------------------- 0
BSNT_04835___ 51 TTATCATCTCGCAAAATCAGGCGCTCGCGTTACTGTCATTGAT------C 94
.||.||||||| |
BL02158___yur 1 --------------------------------GTGACATTGATTGACCGC 18
BSNT_04835___ 95 GGAAAGAGCCGGGACAAGCGACTGATGCGGCGGCGGGGATCGTCTGTCCA 144
|| |||||.||||...||.||.|||||.|||||.||.||||||||.||.
BL02158___yur 19 GG--AGAGCGGGGAAGGGCTACAGATGCCGCGGCTGGAATCGTCTGCCCC 66
BSNT_04835___ 145 TGGCTCTCGCAACGCCGTAATCAGGATTGGTACCAGCTTGCTAAGGGGGG 194
|||||.|||||.|||.|.||.||||..||||||.|||||||.||.||.||
BL02158___yur 67 TGGCTTTCGCAGCGCAGGAACCAGGCATGGTACAAGCTTGCAAAAGGCGG 116
BSNT_04835___ 195 AGCGCAGTACTATAAGGATTTAATCCATCAATTGGAAAAAGACGGTGAAT 244
.|||..|||||||...|||||||||.|.||..|.|||...|||||.||||
BL02158___yur 117 TGCGGCGTACTATGCCGATTTAATCAAGCAGCTTGAAGCTGACGGAGAAT 166
BSNT_04835___ 245 CGGATACAGGATACAAACGTGTC-GGTGCCATCAGCATTCATACTGACGC 293
|||||||.||.||.||||| |.| ||.||.||||||.|.|||||.||||.
BL02158___yur 167 CGGATACGGGGTATAAACG-GACAGGCGCTATCAGCTTGCATACAGACGA 215
BSNT_04835___ 294 GTCTAAA-CTCGATAAAATGGAGGAAAGGGCGTATAAGAGACGGGAGGAT 342
| |.||| ||.||.||||||||.|||.|||||.||...||.||..|||||
BL02158___yur 216 G-CGAAAGCTGGAGAAAATGGAAGAACGGGCGCATCTAAGGCGCAAGGAT 264
BSNT_04835___ 343 GCGCCGGAAATCGGCGACATTACCCGCTTGTC---TGCAAGTGAAACGAA 389
|||||.|||||||||||.||.|||||.||.|| || || ||||||
BL02158___yur 265 GCGCCCGAAATCGGCGAGATCACCCGGTTATCCCATG--AG-GAAACG-- 309
BSNT_04835___ 390 AAAGC---TGTTTCCGATTTTAGCTGACGGCTATGAATCGGTTCATATCA 436
|||| |.||||||..|||.||.||.||.||....|||||||||||||
BL02158___yur 310 -AAGCGTTTATTTCCGCCTTTGGCAGAGGGGTACAGCTCGGTTCATATCA 358
BSNT_04835___ 437 GCGGTGCCGCCCGTGTGAACGGAAGAGCGCTGTGCCGGTCGCTTTTAAGC 486
||||.|||||.||.|||||.||||.|..||||.||||.||.|||.|.|..
BL02158___yur 359 GCGGAGCCGCGCGCGTGAATGGAAAATTGCTGCGCCGCTCACTTGTGAAT 408
BSNT_04835___ 487 GCTGCAGAGAAACGCGGCGCAACGGTCATCAAAGGAAATGCGTCCTTGCT 536
||.|||.|.|||..|||.||..|.||..|...||||||.||.||.|||||
BL02158___yur 409 GCCGCAAAAAAATACGGAGCTTCTGTTGTTTCAGGAAACGCTTCATTGCT 458
BSNT_04835___ 537 TTTTGAAAACGGAACAGTCACCGGCGTGCAAACA--GAT----------- 573
.|.|||| |||| ||||| || |||| |||
BL02158___yur 459 CTATGAA---GGAA-----ACCGG-GT---AACAGGGATCTCCACAGGGG 496
BSNT_04835___ 574 GCAAAGCAGTTTGCGGCTGACGCGGTCATTGTGACGGCGGGAGCATGGGC 623
||||...|.|.|.| |||||...|||..||||.||.||||||||.|||||
BL02158___yur 497 GCAAGAAAATATAC-GCTGATCAGGTGCTTGTCACAGCGGGAGCTTGGGC 545
BSNT_04835___ 624 CAATGAGATATTGAAGCCTCTTGGCATTC-ATTTTCAAGTGTCA--TTTC 670
..|.|||.|.||||||||.||.|||.||| .|||||| |||| |..|
BL02158___yur 546 GGACGAGCTCTTGAAGCCGCTCGGCGTTCGTTTTTCA---GTCAGCTACC 592
BSNT_04835___ 671 AAAAAGCGCAGATTATGCA-TTTTGAAATGACAGATGCAGATACAGG-AT 718
|||||||||||||..|.|| .|||| ..|..|.|||||.|||||.|| |.
BL02158___yur 593 AAAAAGCGCAGATCGTCCACCTTTG-TCTTCCTGATGCCGATACCGGCAG 641
BSNT_04835___ 719 CGTGGCCGGTTGTCATGCCGCCGAGTGATCAGTACATTCTTTCGTTTGAT 768
| |||||.|||||.|||||.||||.|||.||.|||||.||..|.|||||.
BL02158___yur 642 C-TGGCCTGTTGTGATGCCTCCGAATGACCAATACATACTGGCATTTGAA 690
BSNT_04835___ 769 AACGGCAGAATTGTAGCCGGCGCCACACACGAAAACGATGCAGGCCTTGA 818
.|||||.|.||.||.||||||||.||.||||||||.||.||.|..||.||
BL02158___yur 691 GACGGCCGGATCGTTGCCGGCGCTACTCACGAAAATGAAGCGGAACTGGA 740
BSNT_04835___ 819 TGATCTTCGTGTGACAGCCGGAGGCCAGCACGAAGTATTAAGCAAA-GCG 867
.||||||||.||.||.|||||.||||..||||||.| ||...|||| |||
BL02158___yur 741 CGATCTTCGGGTAACGGCCGGCGGCCTTCACGAAAT-TTTCTCAAAGGCG 789
BSNT_04835___ 868 TTAGCCGTTGCACCGGGTCTTG---CTGATGCG-GCTGCAGTTGAAACAA 913
.|.||||||||.||||| .||| .||| ||| ||||| ||||..|..
BL02158___yur 790 CTCGCCGTTGCGCCGGG-GTTGGAATTGA-GCGAGCTGC--TTGAGGCGC 835
BSNT_04835___ 914 GAGTGGGCTTCAGGCCGTTTACACCGGGTTTTCTGCCGGTCGTTGGGGCC 963
|.||.|||||||||||||||||||||||.|||||.||.||..|.||..|.
BL02158___yur 836 GCGTAGGCTTCAGGCCGTTTACACCGGGCTTTCTCCCCGTGATCGGCTCA 885
BSNT_04835___ 964 GTGCCGAATGTTCAAGGCCTATATGCTGCAAACGGTTTGGGTGCTTCTGG 1013
.|||||||..||...||.||....|.|||.||||||.|.||.|||||.||
BL02158___yur 886 TTGCCGAACATTTGCGGGCTCCTCGTTGCCAACGGTCTCGGCGCTTCAGG 935
BSNT_04835___ 1014 ACTGACGATGGGGCCGTTCTTGGGTGCAGAGCTCGCAAAGCTAGTTCTCG 1063
.||.|||...||.||||.|.|.||.||.||..|.||||.|||.|.|.|.|
BL02158___yur 936 GCTTACGTCAGGTCCGTACCTTGGCGCTGAATTGGCAAGGCTCGCTTTGG 985
BSNT_04835___ 1064 GA-AAGCAGACAGAATTAGA-----CCTTAGTCCTTATCATCCAGCCGGA 1107
|| ||| ||.|.||..|.|| |.||| |||.||||.|||||.
BL02158___yur 986 GAGAAG-AGCCTGAGCTTGATATCGCTTTA-----TATGATCCGGCCGGC 1029
BSNT_04835___ 1108 GCACTTGCATAA------ 1119
||.|||| ||
BL02158___yur 1030 GCGCTTG---AAAGTTGA 1044
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