Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01577 and BL02161

See Amino acid alignment / Visit BSNT_01577 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:02
# Commandline: needle
#    -asequence dna-align/BSNT_01577___rapI.1.5803.seq
#    -bsequence dna-align/BL02161.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01577___rapI-BL02161.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01577___rapI-BL02161.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01577___rapI
# 2: BL02161
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1323
# Identity:     726/1323 (54.9%)
# Similarity:   726/1323 (54.9%)
# Gaps:         351/1323 (26.5%)
# Score: 1681.0
# 
#
#=======================================

BSNT_01577___      1 TTGCGAG-GTGTTTTAGATAAAGATAAAATTCCATATGATGTAGTT---A     46
                       |.||| |||                 ||.|||||||||.|.|||   |
BL02161            1 --GTGAGCGTG-----------------ATACCATATGATTTGGTTGCGA     31

BSNT_01577___     47 CAAAAA--AATTAAACGAATGG--TACACCCATATAAAA-AATGATGCTC     91
                     |.||||  ||||     ..|||  ||||.||.||.|||| ||        
BL02161           32 CGAAAATGAATT-----TTTGGTATACAGCCTTAAAAAACAA--------     68

BSNT_01577___     92 TTG---AG--AAAGCTAAACAAATAAAAAAAGAAGTTGAAGAAGATCTAA    136
                     |||   ||  ||.|||.|..|.|..||.||||||||||||..|||..||.
BL02161           69 TTGGACAGGCAAGGCTGAGGATACTAAGAAAGAAGTTGAACGAGAATTAG    118

BSNT_01577___    137 AAAAAATGGAAGAAAGTAAAGATGCTTTACTATATTATCAA-TTACTTGA    185
                     ||.||||||||.|||.|.|.||||...|..|.||||| ||| |||||...
BL02161          119 AACAAATGGAACAAAATCAGGATGTGATTGTCTATTA-CAACTTACTGCT    167

BSNT_01577___    186 ATTCCGCCACGAGTTATTGGTCA-----ATTACATGAATTCAGAAAAGAC    230
                     .|||||.||     ||.|..|||     ||||.|||.||||  .|||..|
BL02161          168 CTTCCGGCA-----TAATCTTCAACTTGATTATATGTATTC--TAAACCC    210

BSNT_01577___    231 AG---AAGAATTGAAA-AGTTCATATCTGGCTATG-----AAAAAG-TTG    270
                     .|   |  ||||.||| || ||.| |.||   |||     |||||| ||.
BL02161          211 GGTGTA--AATTTAAATAG-TCGT-TTTG---ATGAGTTCAAAAAGATTC    253

BSNT_01577___    271 GAGGACCAGGGCAATGTTACT----GGAATGTTGGAATATTATTTTCATT    316
                     | .||.|||...|||    ||    |||||||||||.|||||||.|||||
BL02161          254 G-CGATCAGAATAAT----CTGGAAGGAATGTTGGATTATTATTATCATT    298

BSNT_01577___    317 TCTTTATGGGGATGTATGAATTCAGAAGAAAAAAACTAA---CTGCGGCA    363
                     |.||....||.||||||.|.||||||..||||.||.|||   .||||   
BL02161          299 TTTTCGCTGGAATGTATCATTTCAGACAAAAAGAATTAATCCTTGCG---    345

BSNT_01577___    364 ATAACTTCATATAGAAAAGC--AGAAGCTAAA-----------TTAAGTG    400
                     .|.|.||..|||||..|.||  ||||   |||           ||.|.||
BL02161          346 CTGAATTTTTATAGGGATGCCGAGAA---AAAACTCGATTCTTTTGATTG    392

BSNT_01577___    401 AAGTAGATGATGAGATTGAAAAAGCAGAATTCTTTTTTAAAGTATCATAT    450
                            ||||||..|.|||||.||.|||||.|.|||.||.|.|||..|.
BL02161          393 -------TGATGAACTGGAAAAGGCTGAATTTTATTTCAAGGCATCTGAA    435

BSNT_01577___    451 GTTTATTACTATATGAAGCAAA-CATACTTTTCGCTTAACTATGCCTATA    499
                     ||.||||||.|||||||.|||| ||| |||||||.|.||.|||||...|.
BL02161          436 GTGTATTACCATATGAAACAAACCAT-CTTTTCGATGAATTATGCAAGTC    484

BSNT_01577___    500 GAGCTCTTGAAATATATC-AAAGGTATGATGATTACTTTATACAGA----    544
                     |.||...|.|..||| || |||.|||||||..||||..|     ||    
BL02161          485 GTGCGTATAACTTAT-TCAAAAAGTATGATACTTACGGT-----GAGCGT    528

BSNT_01577___    545 -GATTAAGATGTCAATTTGTATTAGGTGGAAACTTTATTG------ACTC    587
                      ||.||..|.||||.|||               .||||||      |||.
BL02161          529 CGAGTACAAAGTCAGTTT---------------ATTATTGCAGGTAACTG    563

BSNT_01577___    588 CCTAGA--ATAT-------GAAAAGGCATTGGATACATTTATGGAAGCGT    628
                     .|||||  ||||       |||||.||..|..||| ||||          
BL02161          564 GCTAGATCATATGTATCCCGAAAAAGCTCTACATA-ATTT----------    602

BSNT_01577___    629 TAAAAATAGCTGAAGAAATTAA------------------AATTGATTAT    660
                        |||||    ||||..||||                  ||||..|.||
BL02161          603 ---AAATA----AAGAGCTTAAAGAGTCAGAGACACAAGGAATTCTTCAT    645

BSNT_01577___    661 -TTAATTGGG---ATGGCACACATCAACATAGGTATTTGCTTTGATGAGT    706
                      |||  ||||   ||  ||||..|.||.||.||.||.||||...||.|.|
BL02161          646 CTTA--TGGGTTCAT--CACATTTAAATATCGGAATATGCTACAATAAAT    691

BSNT_01577___    707 TAAAAGA---------------CTACA------AAAGTGCATCAAGTCAT    735
                     |..||||               |||||      ||||.||         |
BL02161          692 TGGAAGATGTCGATAAAGCAACCTACAATTTTCAAAGAGC---------T    732

BSNT_01577___    736 CTAAAAAAGGCGTTAGATTTGTTAGAGGTTAGCGATCACAGTTTTGTTG-    784
                     ||.||    .|.|||.|     .|||||..|   |.||.|||||| ||| 
BL02161          733 CTGAA----CCTTTATA-----AAGAGGAGA---AGCATAGTTTT-TTGC    769

BSNT_01577___    785 CGAAAACTCTTTTTATTTTAA-----CACATGTAAAGATCAAGCAAGG--    827
                     |.|||||    .||| ||.||     |||||||.|.|...||||||||  
BL02161          770 CAAAAAC----ATTA-TTCAACCTCGCACATGTCAGGGCAAAGCAAGGGA    814

BSNT_01577___    828 ---TGACAAAGAATCAGCTGGTGA-CTATTTTCAAAAAGGACATGAGTTT    873
                        ||.|||     .|.|||.||| ||||..| |..||||..|.|||||.
BL02161          815 AGTTGTCAA-----TAACTGATGACCTATACT-ATGAAGGCAAAGAGTTG    858

BSNT_01577___    874 G-TAAATAAAACAAATGATGCTGAATATA---ATGCT----AAATTTAAA    915
                     | |.||.|.|||||        ||||.||   |||||    ||.|||.|.
BL02161          859 GCTGAAAAGAACAA--------GAATTTAGATATGCTTGCAAAGTTTGAT    900

BSNT_01577___    916 ATATTAGAAGGACTTTATTTTTCAAATGGTGAATATGAAT-TGATTAGTG    964
                     .||.||.||||.||||||.|||||..||    ||.||.|| ||.||.|.|
BL02161          901 TTAATAAAAGGGCTTTATCTTTCATTTG----ATCTGGATATGGTTCGCG    946

BSNT_01577___    965 AGGCTTTTGCATATTTTGATTC--AATGAAA---ATGTATGCAGATTTAG   1009
                     |..|.||  ||..|||   |||  ||..|||   |.|||||||||..|.|
BL02161          947 AATCGTT--CAAGTTT---TTCGAAAGTAAAGGCAAGTATGCAGACATGG    991

BSNT_01577___   1010 AGAACTATGCTGTTGAAGTGGCCCAATTTTTTCATCGGAAACAGG---AT   1056
                     ||.|.||.|.|.||..||.|||..||.|.||..|   ||||.|.|   |.
BL02161          992 AGGAATACGGTCTTATAGCGGCTGAACTATTAGA---GAAAAAAGAAAAA   1038

BSNT_01577___   1057 TTTCAACGCTCAAGTGAATATTATA--TGATGAGTGTTGAAGCAAGAA-A   1103
                     .|||.| |.|..||||.| |||.||  .|||.|..|||.|.||.|||| |
BL02161         1039 ATTCGA-GATGCAGTGGA-ATTCTACCGGATAACAGTTAATGCGAGAAGA   1086

BSNT_01577___   1104 CAAAATTAAAAAAGGAGAGATTAT-TA-ATG-AAACTCAGTCGGGTCATA   1150
                     ||||.|   .|||||||.|.||.| || ||| |||||.|           
BL02161         1087 CAAATT---CAAAGGAGTGCTTTTCTACATGTAAACTAA-----------   1122

BSNT_01577___   1151 TTGGCAGTAGCGGTGTTAACTAG   1173
                                            
BL02161         1122 -----------------------   1122


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