Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03874 and BL02167

See Amino acid alignment / Visit BSNT_03874 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:54
# Commandline: needle
#    -asequence dna-align/BSNT_03874___czcD.1.5803.seq
#    -bsequence dna-align/BL02167___czcD.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03874___czcD-BL02167___czcD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03874___czcD-BL02167___czcD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03874___czcD
# 2: BL02167___czcD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1069
# Identity:     584/1069 (54.6%)
# Similarity:   584/1069 (54.6%)
# Gaps:         266/1069 (24.9%)
# Score: 1370.5
# 
#
#=======================================

BSNT_03874___      1 ---------------------ATGGGTCACAATCATAATG------AAGG     23
                                          |..||.||||..||..|||      .|..
BL02167___czc      1 ATGGCTCATTCTCACGGACATACAGGACACAGCCACCATGGCAGCCGATC     50

BSNT_03874___     24 AGCAAATAAAAAGGTTTTATTGATC----TC-TTTTATCATGATTACAGG     68
                     |||||||.||||.|...|.||.|||    || .||||  ||..||||   
BL02167___czc     51 AGCAAATCAAAAAGCGCTGTTCATCAGCTTCGGTTTA--ATTTTTAC---     95

BSNT_03874___     69 TTATATGATAATAGAAGCTATAGGTGGATTTTTAACAAATAGTCTGGCGC    118
                     ||.||||||.||.||||..|||||.|||.|.||.||.||.||.||  |||
BL02167___czc     96 TTTTATGATGATTGAAGTGATAGGCGGAATATTGACGAACAGCCT--CGC    143

BSNT_03874___    119 TTT--TATCTGATGCAGGCCATATGCTGAGTGA----------------T    150
                     |||  |.||.|||||.||.||||||||.||.||                |
BL02167___czc    144 TTTGCTGTCAGATGCGGGACATATGCTCAGCGACGCTGCGGCGCTTGGCT    193

BSNT_03874___    151 TCAATTTCATTAATGGTTGCC-CTGATTGCTTTTACATTAGCTGAAAAAA    199
                     |||               ||| ||  |.||.||||.|.|   ||...|||
BL02167___czc    194 TCA---------------GCCTCT--TGGCGTTTAAAAT---TGGGGAAA    223

BSNT_03874___    200 AGGCAAATCACAA-------TAAGACATTCGGCTATAAACGATTTGAGAT    242
                     ||||    |.|||       .||.|||||||||||.|..||.||||||||
BL02167___czc    224 AGGC----CGCAAGCGCGAGCAAAACATTCGGCTACAGGCGCTTTGAGAT    269

BSNT_03874___    243 TCTTGCAGCTGTGATAAACGG-----TGCTGCCTTAATTCTTATTTCTCT    287
                     |.|.||.||..|.||.||.||     ..||||     ||.|.|||||.||
BL02167___czc    270 TTTGGCTGCGTTTATCAATGGCATCACCCTGC-----TTTTGATTTCACT    314

BSNT_03874___    288 TTATATCATTTATGAAGCAATCGAACGCTTCTCTAATCCACCAAAAGTAG    337
                     ||||||..|||..||||||..|.|.|||||.|..|..||.||..||||.|
BL02167___czc    315 TTATATTTTTTGGGAAGCATACAATCGCTTTTTCAGCCCGCCGGAAGTCG    364

BSNT_03874___    338 CAACAACTGGAATGCTTACAATTAGTATCATCG--GGTTAGTTGTGAATC    385
                     |...||..||.||||||.|.|||       .||  ||||.|       ||
BL02167___czc    365 CGGGAAGGGGTATGCTTGCGATT-------GCGACGGTTGG-------TC    400

BSNT_03874___    386 TATTGGTC------------GCTTGGATTATGATGAGTGGCGGAGATACA    423
                     |.||.|||            ||.|||.|.||.||||..|||   ||.|||
BL02167___czc    401 TGTTCGTCAACATTGCTGCGGCCTGGGTAATAATGAAAGGC---GACACA    447

BSNT_03874___    424 AAGAATAATCTGAATATAAGAGGA--GCTTATTTACATGTAATAAGCGAT    471
                     |.....|||.|.|||||  |.|||  ||||.|||.||..|.||..|||||
BL02167___czc    448 AGCGGGAATTTAAATAT--GCGGAGCGCTTTTTTGCACATCATCGGCGAT    495

BSNT_03874___    472 ATGCTCGGCTCTGTAGGTGCCATTTTAGCTGCCATCCTCATCATCTTCT-    520
                     |||||.||||||.|.||.||.||..|.||.|.|.||||.||..|.|||| 
BL02167___czc    496 ATGCTGGGCTCTTTCGGGGCGATCATCGCGGGCCTCCTTATGCTTTTCTT    545

BSNT_03874___    521 ---TTGGATGGGGCTGGGCAGACCCATTGGCTAGTATCATTGTGGCTATT    567
                        |||||    .|...||.||.|||.|.||.||...|.|.||.|||..|
BL02167___czc    546 CAATTGGA----ACATCGCCGATCCAATCGCCAGCGCCGTCGTCGCTGCT    591

BSNT_03874___    568 CTTGTTCTAAGAAGCGGTTACAATGTGACTAAAGATTCCATTCACATATT    617
                     .|.|||||....|||||.|.....|||||.|||||.||..|.||.|||||
BL02167___czc    592 TTGGTTCTCGTCAGCGGCTGGCGGGTGACGAAAGACTCGGTGCATATATT    641

BSNT_03874___    618 AATGGAAGGAACTCCAGAAA-ATATCGATGTC---------TA-------    650
                     |||||||||||..|| |||| |.||.|||| |         ||       
BL02167___czc    642 AATGGAAGGAAAACC-GAAAGACATTGATG-CGGAGGCGCTTAAAAACGG    689

BSNT_03874___    651 --TGATAT-CAT----TCGTACAATTGAAGGGACAGAGGGAATTCAAAAC    693
                       ||.|.| |||    |||..|      |||||     ||          
BL02167___czc    690 CCTGCTTTCCATCCCGTCGGTC------AGGGA-----GG----------    718

BSNT_03874___    694 ATTCATGATTTACACATATGGTCTATCACAAGCGGATTGAATGC--TCTT    741
                      ||||.||..|.|||||.|||||.|||.| |.|.|||   ||||  ||.|
BL02167___czc    719 -TTCACGACCTCCACATTTGGTCGATCTC-ATCCGAT---ATGCCGTCAT    763

BSNT_03874___    742 T---CTTGCCATGCAGTTGTTGACGATCAAC--TGAC--------CATTT    778
                     |   | ||||||...||.|..||.|| .|||  ||||        .||||
BL02167___czc    764 TAAGC-TGCCATATCGTAGCGGATGA-AAACAGTGACAGGGATAGAATTT    811

BSNT_03874___    779 CAGA--AAG--TGAAAATATTTTACGCAA-AATTGAACATGAACTTGAGC    823
                     .|.|  |||  |.|||||||.|.|.|.|| |||..|||.||     ||||
BL02167___czc    812 TAAAACAAGTATCAAAATATCTAAGGAAAGAATGCAACGTG-----GAGC    856

BSNT_03874___    824 ATAAAGGCATTACGCACGTAACCATTCAAATGGAAACCGAAGCGCATAAT    873
                     ||               ||.||..|||||||.| ||..|.||||| |..|
BL02167___czc    857 AT---------------GTGACGGTTCAAATAG-AAGGGGAGCGC-TGTT    889

BSNT_03874___    874 CACGACAATGCGATCCTTTGT-CAGCCCAAAATGGAGAAGCCGCGTGACC    922
                     |.|..| ||| .|||    || |||||     |||           ||.|
BL02167___czc    890 CCCCTC-ATG-AATC----GTGCAGCC-----TGG-----------GAGC    917

BSNT_03874___    923 --ACCATCACC---ATTAA    936
                       ||||||.||   .||||
BL02167___czc    918 AAACCATCCCCGCTCTTAA    936


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