Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04868 and BL02180
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:04
# Commandline: needle
# -asequence dna-align/BSNT_04868___fadN.1.5803.seq
# -bsequence dna-align/BL02180___yusL.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04868___fadN-BL02180___yusL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04868___fadN-BL02180___yusL.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04868___fadN
# 2: BL02180___yusL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2548
# Identity: 1786/2548 (70.1%)
# Similarity: 1786/2548 (70.1%)
# Gaps: 257/2548 (10.1%)
# Score: 6146.0
#
#
#=======================================
BSNT_04868___ 1 ATGAAAGAAGAAACGAGTTTCATTTTTTTTGGTCAAAAAATGAATGATTA 50
BL02180___yus 0 -------------------------------------------------- 0
BSNT_04868___ 51 TTCATTCAATGTTCAAGGGGGATATCTCATGCACAAACACATTCGGAAGG 100
|||..|||.||.|||||.||.|
BL02180___yus 1 ----------------------------ATGGTCAAGCATATTCGAAAAG 22
BSNT_04868___ 101 CAGCCGTTTTAGGATCGGGGGTAATGGGTTCCGGGATTGCGGCGCATTTG 150
|.||||||.|.||.||.||.||.|||||||||||.||.|||||.||.||.
BL02180___yus 23 CCGCCGTTATCGGTTCCGGTGTTATGGGTTCCGGCATCGCGGCTCACTTA 72
BSNT_04868___ 151 GCTAACATCGGAATTCCTGTCCTGCTGCTAGATATTGTGCCGAACGATTT 200
||.||.|||||.||||||||..|.|||||.|||||.||||||.|.||.||
BL02180___yus 73 GCCAATATCGGGATTCCTGTATTACTGCTCGATATGGTGCCGCATGAATT 122
BSNT_04868___ 201 GACA---AAGGAAGAGGAAAAAAAGGGGCTG-AC----GAAGGACAGTCC 242
.||| .||||| ||||||||| |||.| || ||| ||| ||
BL02180___yus 123 AACAGATGAGGAA-AGGAAAAAA---GGCCGCACCCTTGAA-GAC---CC 164
BSNT_04868___ 243 GGAGATGCGCAGCAGGCTGAGC-CGG-CAGGCGGTGAAAAAACTGCTGAA 290
|||..||||||...||||| || ||| || ||.||..||||.|||||.||
BL02180___yus 165 GGATGTGCGCAATCGGCTG-GCACGGACA-GCCGTACAAAAGCTGCTAAA 212
BSNT_04868___ 291 ACAAAAGCCCGCTCCCCTCACATCAGCGAAAAATACCTCCTATATTA-CA 339
.|||||.||.|||||.||.||.|||..|||.||||.|..|..|||.| ||
BL02180___yus 213 GCAAAAACCGGCTCCGCTGACTTCAAAGAAGAATATCAGCCGTATCAGCA 262
BSNT_04868___ 340 CCGGGCAATCTGGAGGATGATGCAGAAAAACTGAAAGAAGCAGATTGGAT 389
|.||| ||..||||.||.|||...|||||..|.|||||.||.||.|||||
BL02180___yus 263 CAGGG-AACATGGAAGACGATTTTGAAAAGATTAAAGATGCCGACTGGAT 311
BSNT_04868___ 390 TATTGAGGTCGTTGTCGAAAACCTTGAAGTCAAAAAGAAAATTTTCGCTC 439
||||||.||.||||||||||||||.||..||||||||.||.|.||
BL02180___yus 312 TATTGAAGTTGTTGTCGAAAACCTGGAGATCAAAAAGCAAGTGTT----- 356
BSNT_04868___ 440 TT-----GTGGATGAACATCGAAAGAC-TGGAAGCATCGTCTCAAGCAAC 483
|| ||.|||.||.|..|||| || .||||||||||||...||||||
BL02180___yus 357 TTCAAAGGTCGATCAATACAGAAA-ACAAGGAAGCATCGTCAGCAGCAAC 405
BSNT_04868___ 484 ACATCCGGCATATCAGTGCAGG-AAATGGCTGAAGGCCGGTCGGATGATT 532
|||||.|||||.||.|| |||| |.||||||||.||..||||.|.|||||
BL02180___yus 406 ACATCAGGCATCTCCGT-CAGGCAGATGGCTGAGGGAAGGTCCGCTGATT 454
BSNT_04868___ 533 TTAAAGCCCATTTTCTCGGAACGCATTTTTTTAATCCCGCACGCTATTTA 582
|||||...||.|||.|.||||||||.||.||.|||||.||.|||||||||
BL02180___yus 455 TTAAAAAGCACTTTTTAGGAACGCACTTCTTCAATCCGGCCCGCTATTTA 504
BSNT_04868___ 583 AAGCTGCTGGAGATCATTCCGATTAAGGAAACGGATCCTGATATTTTAAA 632
|||||.||.|||.|.|||||||||.|.||||||||.||.| ||
BL02180___yus 505 AAGCTCCTTGAGGTGATTCCGATTGACGAAACGGAGCCCG--------AA 546
BSNT_04868___ 633 G--------TTTATGAAAGCTTTCGGAGAAAATGTCCTCGGGAAAGGCGT 674
| ||||||||....|||||.|||.|.||.||.||.|||||.||
BL02180___yus 547 GTGCTGTCCTTTATGAAGAAATTCGGCGAAGACGTTCTTGGCAAAGGGGT 596
BSNT_04868___ 675 TGTTACAGCAAAGGACACACCGAACTTTATCGCAAACCGAATCGGGACTT 724
||||..|||.||.|||||.||.|||||||||||.|||||.|||||.||.|
BL02180___yus 597 TGTTGAAGCGAAAGACACGCCAAACTTTATCGCCAACCGCATCGGAACCT 646
BSNT_04868___ 725 ACGGGCTT-CTCGTGACAGTCCAAGAAATGCTGAAAGGCGGTTATCA-GG 772
|| ||||| ||.|||||.||.||.|||||||||||||||||.|| || |.
BL02180___yus 647 AC-GGCTTGCTTGTGACGGTTCAGGAAATGCTGAAAGGCGGCTA-CACGA 694
BSNT_04868___ 773 TCGGGGAGGTTGATTCGATCACAGGACCGCTGATCGGCAGGCCGAAAAGC 822
|.||.||.||.||||||||.|||||.|||||||||||..|.|||||||||
BL02180___yus 695 TAGGCGAAGTCGATTCGATTACAGGTCCGCTGATCGGACGCCCGAAAAGC 744
BSNT_04868___ 823 GCCACCTTTAGAACGCTTGATGTGGTCGGCCTCGATACATTCGCCCACGT 872
||.|||||.||||||||.|||||.||||||||.||||||||..|.|||||
BL02180___yus 745 GCGACCTTCAGAACGCTCGATGTCGTCGGCCTTGATACATTTTCACACGT 794
BSNT_04868___ 873 TGCCCGAAATGTGTATGACAAAGCTGA-TGGCGATGAAAAAGAAGTGTTT 921
||||..||||||.|||.||.||| |.| .|||||.||||||.|.||.||.
BL02180___yus 795 TGCCAAAAATGTCTATAACCAAG-TCACGGGCGAAGAAAAAAACGTTTTC 843
BSNT_04868___ 922 CGCCTTCC--AAGCTTCA-TGAACGATATGCTGGAAAAAGGGTGGATCGG 968
||.||.|| || ||.| ||||| |.|||||.||||||||.||||||||
BL02180___yus 844 CGGCTCCCTGAA--TTTATTGAAC-AAATGCTCGAAAAAGGCTGGATCGG 890
BSNT_04868___ 969 AAGCAAGGCCGGCCAAGGCTTTTATAAAAAAGAAGGAAAA-ACGATTTAT 1017
.|||||.||....|||||.|||||.||||||||||||||| || ||...|
BL02180___yus 891 GAGCAAAGCGAAACAAGGTTTTTACAAAAAAGAAGGAAAAGAC-ATCCTT 939
BSNT_04868___ 1018 GAGCTTGACCCAGTGACGCTTACTTACGGCGAGCGGACAAA-AATGAAAT 1066
|||||.||.||..|||||.|.||.|||.|||.|| |.|||| |.|.|||.
BL02180___yus 940 GAGCTCGATCCGATGACGATGACCTACAGCGCGC-GTCAAACATTAAAAA 988
BSNT_04868___ 1067 CACCGGCACTTGAAGCGGCAAAACAGGCA----AAAGGGACAAAAGCCAA 1112
||.|||.|||.|||||||| ||.||| |||||..||..|||.|.
BL02180___yus 989 CATCGGGACTGGAAGCGGC----CAAGCAAATGAAAGGCGCAGGAGCGAG 1034
BSNT_04868___ 1113 AATGAAAGCGCTTATTTATTCGGATGACAGGGCCGGCCGTTTGCTGTGGA 1162
|.|||||||||||.|||||||.|||||||||||.||..|..|.||.||||
BL02180___yus 1035 ATTGAAAGCGCTTGTTTATTCCGATGACAGGGCGGGAAGCCTCCTTTGGA 1084
BSNT_04868___ 1163 ATATCACTTCTCAAACCCTGCTTTACTCAGCCGAGCTGCTTGGCGAGATT 1212
|.||.||..|||..||.||..|.||.||.||.||||||...||.||.||.
BL02180___yus 1085 AGATTACAGCTCCGACGCTTGTATATTCGGCGGAGCTGACAGGGGAAATC 1134
BSNT_04868___ 1213 GCCGA-TGATATTCAT----GCGATTGACCAAGCCATGAAGTGGGGATTC 1257
||||| .| ||| |||.||||.||.||.|||||.|||||||||
BL02180___yus 1135 GCCGACAG-----CATAACGGCGGTTGATCAGGCGATGAAATGGGGATTC 1179
BSNT_04868___ 1258 GGCTG---GGAACTGGGACCTTTTGAGATGTGGGACGCCATCGGCCT--C 1302
||||| |||| ||.||.|||||.|||||||||..||||||..| .
BL02180___yus 1180 GGCTGGTCGGAA---GGGCCGTTTGAAATGTGGGACAGCATCGGTGTGAA 1226
BSNT_04868___ 1303 AAGCAGTCAGCGGAAAAGCTTGAGCAGCTTGGAGCAGATATGCCTGG--- 1349
|||| ||.|.|.|||||||||| ||||| |.|.||||
BL02180___yus 1227 AAGC--TCGGTGCAAAAGCTTGA---------AGCAG--AGGGCTGGAAG 1263
BSNT_04868___ 1350 --------CTGGATAAAAGAGATGCTGGATAAAGGAAATGAAACCTTCTA 1391
||||.|.||.||.|||||.|..||||||.|||||||||||||
BL02180___yus 1264 GTCGCGGACTGGGTGAAGGAAATGCTCGCAAAAGGACATGAAACCTTCTA 1313
BSNT_04868___ 1392 CATCAAAGAGAACGGAACGGTATTTTA------TTATGACCGCGGCGAAT 1435
|.|.||.||.|||||||.|...||.|| ||.|||..|||||||||
BL02180___yus 1314 CCTTAAGGAAAACGGAAAGACGTTCTACTACTGTTTTGAAAGCGGCGAAT 1363
BSNT_04868___ 1436 ACAGAGCCGTGAAAGAAAACAA-AAAACGAATTCATTTACAAG----CAC 1480
||||.||..|..|||||||||| |||||| ||.||||| | |||
BL02180___yus 1364 ACAGGGCGCTTCAAGAAAACAAGAAAACG-ATCCATTT----GTCGTCAC 1408
BSNT_04868___ 1481 TTAAAGAAACAAAAGGCGTGATTGCGAAAAACAGCGGAGCAAGCTTAATT 1530
|.|||||||||||||||||.||...||||||||||||.|||||.||.||.
BL02180___yus 1409 TCAAAGAAACAAAAGGCGTCATCAAGAAAAACAGCGGGGCAAGTTTGATC 1458
BSNT_04868___ 1531 GACCTTGGAGATGATGTGGCCCTTCTTGAATTTCATTCGAAAAGCAATGC 1580
||..|.||.||||||||.||.||.||.||||||||.|||||||||||.||
BL02180___yus 1459 GATTTAGGCGATGATGTCGCACTGCTCGAATTTCACTCGAAAAGCAACGC 1508
BSNT_04868___ 1581 GATCGGCCTCGATATCATTCAAATGATCCACAAA---GGATTAGAGGAAA 1627
.||||||||.||.|||||||||||| |..||| |...|.||||||.
BL02180___yus 1509 AATCGGCCTGGACATCATTCAAATG---CTGAAATTTGCTCTCGAGGAAG 1555
BSNT_04868___ 1628 CAGAACG-GAATTACAAGGGCCTTGTCATCGGCAATCAAGGGAAAAATTT 1676
.|| ||| .||.||.||.||.|||||.||||||||.||.||.||||||||
BL02180___yus 1556 TAG-ACGCCAACTATAAAGGGCTTGTGATCGGCAACCAGGGCAAAAATTT 1604
BSNT_04868___ 1677 CTGCGTCGGCGCGAATCTCGCCATGATCTTAATGGAAGTCCAAGATGACA 1726
|||||||||.||.||||||||.|||||..|.|||||||..|||||.||||
BL02180___yus 1605 CTGCGTCGGAGCCAATCTCGCGATGATGCTGATGGAAGCTCAAGACGACA 1654
BSNT_04868___ 1727 ACTTTTTGGAAGTTGATTTTGTGATACGCCGTTTTCAGGAGACGATGATG 1776
|||.|.|||||.||||..|..|.||.||.|..||.||.||||||||||||
BL02180___yus 1655 ACTATATGGAAATTGACATGATCATCCGTCAGTTCCAAGAGACGATGATG 1704
BSNT_04868___ 1777 AAGATCAAATACAGTGCGAAACCGGTTGTCGCCGCGCCATTTGGCATGAC 1826
||..|.|||||||||.|.||.|||||.|||||.||.||.||.||||||||
BL02180___yus 1705 AAAGTGAAATACAGTTCCAAGCCGGTCGTCGCTGCTCCGTTCGGCATGAC 1754
BSNT_04868___ 1827 GCTCGGCGGAGGAACGGAAGTATGCCTGCCGGCGGCGCGCATTCAAGCGG 1876
|||.|||||.||.||.||..||||||||||.||.||.||..|||||||..
BL02180___yus 1755 GCTTGGCGGGGGGACTGAGCTATGCCTGCCTGCTGCCCGTGTTCAAGCCT 1804
BSNT_04868___ 1877 CAAGCGAAGCCTATATGGGCCTTGTTGAATCAGGTGTCGGCCTCATCCCT 1926
||||||||.|.||.||||||||.||||||.||||.|||||.||.||.||.
BL02180___yus 1805 CAAGCGAATCATACATGGGCCTCGTTGAAACAGGCGTCGGTCTGATTCCG 1854
BSNT_04868___ 1927 GGCGGAGGGGGAAACAAAGAGCTGTACATCAATCATCTT-----CGCCGC 1971
|||||.||.||.||.||||||||.||..|.|||.| ||| .||.||
BL02180___yus 1855 GGCGGCGGAGGCAATAAAGAGCTTTATTTAAATTA-CTTGAAAGGGCTGC 1903
BSNT_04868___ 1972 -----GGCCTTGATCCG---AT---GAATGCGGCAATGAAAACATTTGAA 2010
|||.||.|.||| || |.|.||.||.||.||.||.|||||.
BL02180___yus 1904 CTGAAGGCGTTAAACCGGATATCCAGGAGGCCGCCATCAAGACGTTTGAG 1953
BSNT_04868___ 2011 ACGATTGCGATGGCGAAAGTGTCCGTTTCCGCTCAAGAGGCTCGTGAGA- 2059
||.|||||..|.||.|||..|||...|||.||||||||.| ||..|||
BL02180___yus 1954 ACAATTGCCCTTGCAAAAACGTCGACTTCGGCTCAAGAAG--CGAAAGAA 2001
BSNT_04868___ 2060 -TGAACATCTTAAAAGAAACGGATCAGATCAGCGTGAATCAAGACCACCT 2108
||||||||||||..|.|..||||||.||||||.|.|||||.||.|||.|
BL02180___yus 2002 CTGAACATCTTAACCGCAGAGGATCAAATCAGCATCAATCAGGATCACTT 2051
BSNT_04868___ 2109 GTTATACGATGCGAAGCAGCT-GGCCGCATCTCTATACGATACCGGCTGG 2157
||||||||||||.||..|.|| |.||..| |.||.|.|||.|.|||||..
BL02180___yus 2052 GTTATACGATGCCAAAAAACTCGTCCTGA-CACTTTCCGAAAGCGGCTAC 2100
BSNT_04868___ 2158 CGGCCGCCTGTAAAAGA-AAAGGTCAAGGTGCCGGGAGAAACCGGTTATG 2206
||.|||||.||.||||| ||||.|| .||||.||||.||||||||.||||
BL02180___yus 2101 CGTCCGCCGGTGAAAGAGAAAGTTC-CGGTGACGGGCGAAACCGGCTATG 2149
BSNT_04868___ 2207 CGGCACTCTTGCTTGGCGCTGAGCAGATGAAGCTGTCCGGCTATATATCT 2256
||||.|||.||||.||.|||||...|.|.||.||.||||||...||.|||
BL02180___yus 2150 CGGCGCTCCTGCTCGGTGCTGAATCGTTAAAACTTTCCGGCGCCATCTCT 2199
BSNT_04868___ 2257 GAGCATGATTTCAAGATCGCGAAAAAACTCGCTTATGTCATTGCGGGCGG 2306
||.||.||..|.|||||.|||||||||||.||.|.||||||.||||||||
BL02180___yus 2200 GAACACGACATGAAGATTGCGAAAAAACTGGCGTTTGTCATCGCGGGCGG 2249
BSNT_04868___ 2307 AAAAGTGCCGTTTGGTACAGAGGTTGATGAAGAGTATTT-----ATTGGA 2351
...|||.||.||.||..|.||.||....|||||.||.|| |||
BL02180___yus 2250 CCGAGTTCCATTCGGCGCCGAAGTAACGGAAGAATACTTGCTCAATT--- 2296
BSNT_04868___ 2352 GATCGAAAGAGAAGCGTTTTTGAG-TTTGGCAGGAGAAGCAAAATCTCAA 2400
|.|||||||||||||||.|||| .|||..| |.|||.|.|||||.||.
BL02180___yus 2297 --TGGAAAGAGAAGCGTTTCTGAGCCTTGTGA-GCGAACCGAAATCGCAG 2343
BSNT_04868___ 2401 GCGAGAATGCAGCATATGCTTGTGAAAGGTAAACCTTTACGGAATTAG 2448
|||||||||||||||||||||||||||||.||||||||.||.||||||
BL02180___yus 2344 GCGAGAATGCAGCATATGCTTGTGAAAGGCAAACCTTTGCGTAATTAG 2391
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