Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_04887 and BL02183

See Amino acid alignment / Visit BSNT_04887 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:05
# Commandline: needle
#    -asequence dna-align/BSNT_04887___yusV.1.5803.seq
#    -bsequence dna-align/BL02183___yusV.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04887___yusV-BL02183___yusV.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04887___yusV-BL02183___yusV.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04887___yusV
# 2: BL02183___yusV
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 892
# Identity:     624/892 (70.0%)
# Similarity:   624/892 (70.0%)
# Gaps:          77/892 ( 8.6%)
# Score: 2312.5
# 
#
#=======================================

BSNT_04887___      1 ATGTATATAGAAAACGTGCAATACATAGTGCTGCTAAAAAGCCAGCAAAA     50
                                                                       
BL02183___yus      0 --------------------------------------------------      0

BSNT_04887___     51 AGGAGCGGTTATGGGTATGAGTGCAATTTCTACAGAAACGCTGAGCTTAG    100
                                     ||||||||.|||||.|||||||||.|.|||||||
BL02183___yus      1 ----------------ATGAGTGCCATTTCAACAGAAACGTTAAGCTTAG     34

BSNT_04887___    101 GATACGGGGATGCCGTTATTATTGATGAGTTGAATTTAACAATTCCCAAA    150
                     |.||.||.||..|..|.||||||||||||||.||.|||||.||.||.|||
BL02183___yus     35 GTTATGGAGAAACAATCATTATTGATGAGTTAAACTTAACGATCCCAAAA     84

BSNT_04887___    151 GGTGAAATTACCGTATTTATTGGCAGCAATGGCTGCGGAAAATCGACACT    200
                     ||||||||.|||||||||||.||||||||.||||||||.||.|||||.||
BL02183___yus     85 GGTGAAATCACCGTATTTATCGGCAGCAACGGCTGCGGTAAGTCGACTCT    134

BSNT_04887___    201 TTTACGTTCATTAGCGCGCCTGATGAAGCCGAGAGGCGGTTCAGTGCTGC    250
                     ..|.||.||..|.||.||..||||||||||.|..||||||||.|||||.|
BL02183___yus    135 CCTTCGGTCTCTCGCACGTTTGATGAAGCCAAAGGGCGGTTCGGTGCTCC    184

BSNT_04887___    251 TGGAAGGAAGAGCGATTGCCAAGCTTCCGACGAAGGAAGTCGCAAAAGAG    300
                     |.|||||.||..|.||.|||||||||||||||||.|||||.|||||.|||
BL02183___yus    185 TCGAAGGCAGCTCCATCGCCAAGCTTCCGACGAAAGAAGTGGCAAAGGAG    234

BSNT_04887___    301 CTCGCAATCCTGCCCCAAGGTCCTTCGGCTCCTGAGGGGCTGACGGTGCA    350
                     ||.||.||.||.||.|||||.|||||||||||.||.||..||||.||.|.
BL02183___yus    235 CTGGCCATTCTTCCTCAAGGCCCTTCGGCTCCGGAAGGCTTGACCGTTCT    284

BSNT_04887___    351 TCAGCTGGTGAAGCAAGGAAGATATCCTTACCAAAACTGGCTGAAGCAGT    400
                     .|||||.||.|||||.||..|.||||||||||||||||||||||||||.|
BL02183___yus    285 CCAGCTCGTTAAGCAGGGGCGGTATCCTTACCAAAACTGGCTGAAGCAAT    334

BSNT_04887___    401 GGTCAAAAGAGGATGAGGAAGCAGTTGAAAGAGCGCTTAAAGCAACAAAG    450
                     |||||..|||.|||||.||.||.||..||||.||..|.|||||.||||..
BL02183___yus    335 GGTCAGCAGAAGATGAAGAGGCCGTGCAAAGGGCTTTGAAAGCGACAAGA    384

BSNT_04887___    451 CTTGAGGACATGGCTGACCGCGCCGTTGATTCTTTGTCAGGCGGACAGCG    500
                     .|.||.||..|||||||.||..|.||.|||||.||||||||.||.|||||
BL02183___yus    385 ATGGAAGAACTGGCTGAGCGTACAGTCGATTCCTTGTCAGGAGGCCAGCG    434

BSNT_04887___    501 CCAGCGGGCTTGGATTGCGATGACGCTTGCCCAGGAAACGGATATCATCC    550
                     .|||||.||||||||.|||||||||||.||||||||||||||||||||..
BL02183___yus    435 GCAGCGCGCTTGGATCGCGATGACGCTCGCCCAGGAAACGGATATCATTT    484

BSNT_04887___    551 TTCTTGACGAGCCGACGACGTATTTAGACATGACGCATCAAATTGAAATT    600
                     |.||.||.||.||||||||.||.||.||.||||||||||||||.||||||
BL02183___yus    485 TACTGGATGAACCGACGACATACTTGGATATGACGCATCAAATCGAAATT    534

BSNT_04887___    601 CTTGATTTGCTGTTTGAGCTGAATGAAAAGGAAGGCCGGACGATTGTTAT    650
                     ||.||..|..|||||||..|.||||||.|.|||...||.|||||.||.||
BL02183___yus    535 CTGGACCTATTGTTTGAATTAAATGAACACGAAAAGCGCACGATCGTGAT    584

BSNT_04887___    651 GGTACTCCATGACTTAAACTTGGCGTGCCGCTATGCACACCATCTCGTGG    700
                     |||.||.||.||.||.|||.|.||.||||||||.||.||.||.|||||.|
BL02183___yus    585 GGTGCTGCACGATTTGAACCTCGCCTGCCGCTACGCCCATCACCTCGTCG    634

BSNT_04887___    701 CCATAAAAGACAAACGGATTTATGCAGAAGGCCGTCCGGAAGAGGTC---    747
                     |.||.|||||.|||..|||.|||||.||||||||.||.|||    ||   
BL02183___yus    635 CGATTAAAGATAAAAAGATATATGCCGAAGGCCGGCCTGAA----TCCAT    680

BSNT_04887___    748 -ATCACTTGTGATCTTGTGCAAAATGTGTTTTCTATGAACTGTCAGGTTA    796
                      ||||..||..|.|||||.||..|.||.|||...|||.||||..|.||.|
BL02183___yus    681 TATCAACTGCAAGCTTGTACAGGACGTTTTTGAAATGGACTGCGAAGTGA    730

BSNT_04887___    797 CACAGGACCCGCTCTTCGGAACGCCTCTTTGCATTCCTCATGGCAGGGGC    846
                     |..|.||.|||||.|||||.|||||.|..||||||||..|.||.|..||.
BL02183___yus    731 CGAAAGATCCGCTTTTCGGCACGCCGCACTGCATTCCGTACGGAAAAGGA    780

BSNT_04887___    847 AGATGCATTGTCCAGGAAGCGGCTTTCACATCACATGGATAA    888
                     ||||||||.||||||.|.|.||  |||| .||.||||..|||
BL02183___yus    781 AGATGCATCGTCCAGCAGGTGG--TTCA-GTCCCATGCTTAA    819


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.