Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04889 and BL02187

See Amino acid alignment / Visit BSNT_04889 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:05
# Commandline: needle
#    -asequence dna-align/BSNT_04889.1.5803.seq
#    -bsequence dna-align/BL02187___yusX.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04889-BL02187___yusX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04889-BL02187___yusX.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04889
# 2: BL02187___yusX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1906
# Identity:    1264/1906 (66.3%)
# Similarity:  1264/1906 (66.3%)
# Gaps:         230/1906 (12.1%)
# Score: 3971.0
# 
#
#=======================================

BSNT_04889         1 ATGGCGCTGCA-------AGGGGTAGGCCAAAGATGGGATCTTGA--TTC     41
                     |||.|..|.||       |.||.||.|       ||||||||.||  || 
BL02187___yus      1 ATGACATTTCATCAACTTAAGGATACG-------TGGGATCTCGAGGTT-     42

BSNT_04889        42 ATTTTTTAAGGGCGGAAGCCAATCGGAAGAATT----CAAAGGTTATATT     87
                      ||.|||||.|||||.|||...||.|..|||||    |||...||| |.|
BL02187___yus     43 -TTCTTTAAAGGCGGGAGCGGCTCCGCCGAATTCCGCCAATATTTA-AAT     90

BSNT_04889        88 GAGAAGCTGTCACAAAGTCTGCGTGCA--TTTCAAGAC---------AGG    126
                     ||||     |.| |||..||||.|.||  |||.|| ||         |||
BL02187___yus     91 GAGA-----TTA-AAACACTGCTTTCAACTTTTAA-ACGTTCGGCCGAGG    133

BSNT_04889       127 -----ACTGATGCGTTTC----AGGTGCC----TGAATCGCCTGAAGAGG    163
                          ||     |||.||    ||..|||    |||||    ||||    
BL02187___yus    134 CTCTTAC-----CGTCTCAAAAAGCGGCCTTGATGAAT----TGAA----    170

BSNT_04889       164 CTGAAGGGCTGACCGCG----TTG-----CTTGAT-TTATTCGAACAGAC    203
                      .|||..||||   |||    |||     .||||| |||         |.
BL02187___yus    171 -AGAAACGCTG---GCGCTTTTTGAAACAATTGATGTTA---------AA    207

BSNT_04889       204 ATCCGTCAAGCTTCAGCAGGCCGGCGCGTTTGTTGCCTGCCTCCAGGCCC    253
                     |||||..||          ||.|.|||.|||||.|..||.|||||.||||
BL02187___yus    208 ATCCGCGAA----------GCAGACGCTTTTGTCGGATGTCTCCAAGCCC    247

BSNT_04889       254 AGAATATCAATGATCAAAAGGCTATAGAGCATCAGGCACTCA--------    295
                     ||.|.|.|...|||..||||||.|         |.||.||.|        
BL02187___yus    248 AGGACACCGCGGATTTAAAGGCGA---------ATGCCCTTAATTTTGAG    288

BSNT_04889       296 -TGAACCGGCTTTCCGCAGATTTTCAATCGTCGCTCGT--TACATTAGAT    342
                      |.|.||||||..|.||.|||...||...|.||||.||  |.|.|.|.|.
BL02187___yus    289 GTCACCCGGCTCGCTGCCGATGCGCAGAAGGCGCTGGTCGTGCTTGACAG    338

BSNT_04889       343 CATAAACTTGTGGACGTAGATCAAGACGTGTGGAAT--GAATTGCTA---    387
                     |  |||.||   |.|||.|..|.|.|  |||.||||  |||  ||.|   
BL02187___yus    339 C--AAATTT---GCCGTTGTCCCAAA--TGTAGAATGGGAA--GCGATCC    379

BSNT_04889       388 -ACAAAACCGGGATTAAGA--------GATATATCTTACATATTAAATGA    428
                      .|||      |||.|| |        |||||..||||.||.||.|||||
BL02187___yus    380 TTCAA------GATGAA-AGCATTTCCGATATCGCTTATATTTTGAATGA    422

BSNT_04889       429 AAGAAGACAGAGGGTTGCCGAAAAGCTTAGCCCCGGTAAAGAAAAACTGA    478
                     .||||||.||.||||..|.|||||||||||..|||...|.||||.|.|||
BL02187___yus    423 GAGAAGAGAGCGGGTAACGGAAAAGCTTAGTTCCGAACAGGAAACATTGA    472

BSNT_04889       479 T---CGGGAACCTTG-CCGTGGACGGATATCACGCTTGGAGTGACTTATA    524
                     |   .||    |||| |.||.|||||||||||.||.|||.|.||..|.||
BL02187___yus    473 TTCAAGG----CTTGTCTGTTGACGGATATCATGCCTGGGGCGATATGTA    518

BSNT_04889       525 CAATATGGTTGTCGGGAAAATGACGATCCCGTATGGGGAAAATGGTGAAA    574
                     |.|.|...|.||||...||||....||.|||||||..|||.||||.||.|
BL02187___yus    519 CGACAGCATCGTCGACCAAATTCAAATTCCGTATGAAGAAGATGGCGAGA    568

BSNT_04889       575 ACAAGCAAT--TGTCTGTCGGTCAGGCGGAGAATATGATGGACCATCAAG    622
                     ..||  |||  ||||||||||.||||||.||||..|||     ||||.|.
BL02187___yus    569 CGAA--AATTCTGTCTGTCGGACAGGCGCAGAACCTGA-----CATCTAA    611

BSNT_04889       623 ACCGTACTGTCAGAAAAA---------CAGTATATGAACGTTTCCGCCA-    662
                     ||    |||.||||||.|         |.||||..|||..|||...||| 
BL02187___yus    612 AC----CTGACAGAAAGATCCGCCGCTCCGTATCGGAAAATTTGGACCAC    657

BSNT_04889       663 AGCTTGGGAGAGCAAGCAAGATATTTTCAGCAACACGCTGAATCATTTGG    712
                     .|||.||.|.||||.|| .|||.|..||||||.||||||||||||..|.|
BL02187___yus    658 GGCTGGGAACAGCACGC-TGATTTGCTCAGCAGCACGCTGAATCACCTCG    706

BSNT_04889       713 CGGGATTCCGGCTCGAAAC--CTATAAGGCGCGTGGCTGGGAGAATGTCC    760
                     |.||.|||.|.||  .|||  ||||.|||||.|.||||||||.|||||..
BL02187___yus    707 CCGGTTTCAGACT--GAACGTCTATGAGGCGAGAGGCTGGGACAATGTAT    754

BSNT_04889       761 TGAAGGAACCGCTGCAAATTAACAGGATGAAAAAAGAAACACTTGATACG    810
                     ||||.|||||||||.|.||.|||.|.|||||..|.|||||.||||||...
BL02187___yus    755 TGAAAGAACCGCTGGACATCAACCGCATGAAGCAGGAAACCCTTGATGTC    804

BSNT_04889       811 ATGTGGCAGGTCATCACTGAAAACAAGAAGCCGTTCGTTCAG----TTTT    856
                     ||||||||||||||.|.|||..|.||.||||||||  |.|||    |.||
BL02187___yus    805 ATGTGGCAGGTCATTATTGATCATAAAAAGCCGTT--TGCAGACTATCTT    852

BSNT_04889       857 TGAACCGGAAAGCATCCATGCTCGGCCTTGAAAAACTCAGCTGGTACGAT    906
                     |  .||||||.||.||..|||||||.||.||.|||||.||||||||.||.
BL02187___yus    853 T--CCCGGAAGGCGTCTTTGCTCGGACTGGATAAACTGAGCTGGTATGAC    900

BSNT_04889       907 GTCGAGGCACCGATCGGTTCTGACGGAAAGGTCTATTCGTAT---GATGA    953
                     |||||.||.|||||||||||.|..|.|||||..|||||||||   ||.|.
BL02187___yus    901 GTCGAAGCGCCGATCGGTTCAGCAGCAAAGGAATATTCGTATCAAGAGGC    950

BSNT_04889       954 AGCCGCAAATATCATTACCAGCCAGTTTTCAACGTTTGGCAAAAAGCTGT   1003
                     ||||||   |.|.||||||.|.||||||..|||||||||.||||||||.|
BL02187___yus    951 AGCCGC---TTTTATTACCGGGCAGTTTAAAACGTTTGGAAAAAAGCTCT    997

BSNT_04889      1004 CCTCATTCACTGAAAAAGCGTTTCGGGACGGCTGGATTGAGGCGGAAGAC   1053
                     ||||.||..|||||||.|||.|..|.|||.|.|||.||||.||.||||||
BL02187___yus    998 CCTCCTTTGCTGAAAAGGCGCTCAGAGACAGATGGGTTGAAGCTGAAGAC   1047

BSNT_04889      1054 AGGAGCGGAAAAAGAGTC--GGCGGCTTTTGCACCAGTTTTCCTGACAGC   1101
                     |||.|.||||||  .|||  ||||||||||||.|||.|||||||||||||
BL02187___yus   1048 AGGGGAGGAAAA--CGTCCGGGCGGCTTTTGCGCCAATTTTCCTGACAGC   1095

BSNT_04889      1102 GGGGAATCCCGGATTTTCATGACATTTTCGGGCAGCGCCTCAAATGTCTC   1151
                     ||||||||..|.||.||.|||||||||.|.||.|||...|||||.||.||
BL02187___yus   1096 GGGGAATCAAGAATATTTATGACATTTGCAGGAAGCCAGTCAAACGTTTC   1145

BSNT_04889      1152 TACTCTT-GCGCATGAACTCGGGCACGCGTTCCATCAGGAAGCAATGCTC   1200
                     .|| ||| ||||||||.||.||.||.||.||.|||||||||.|.|||||.
BL02187___yus   1146 CAC-CTTGGCGCATGAGCTTGGCCATGCCTTTCATCAGGAATCCATGCTG   1194

BSNT_04889      1201 GACGTCAGGCCGTTAAACCGCTCCTACGCCATGAATGTTGCAGAAACAGC   1250
                     ||||||||||||.|.|||.|..|.||.||.||||||||.||.|||||.||
BL02187___yus   1195 GACGTCAGGCCGCTGAACAGGGCGTATGCGATGAATGTGGCGGAAACGGC   1244

BSNT_04889      1251 TTCAACGTTTGCAGAGATGATAGTCGCGGACGCGACTGTCCAGCAGGCCG   1300
                     .||.||.||||||||.|||||.||.||.||.|||.|..|..|.||.||||
BL02187___yus   1245 GTCCACCTTTGCAGAAATGATCGTGGCCGATGCGGCGTTAAAACAAGCCG   1294

BSNT_04889      1301 ----AGACGAGGGAAGAGAAGCTTGTTCTTCTGGAGGATAAAGTGCAAAG   1346
                         ||||    |||||.||..|.||.||||||||.|||||.||.||..|
BL02187___yus   1295 GTTCAGAC----GAAGAAAAAATCGTCCTTCTGGAAGATAAGGTTCAGCG   1340

BSNT_04889      1347 AAGTGTTGCGTTCTTCATGAACATTCACGCAAGATTTCTATTCGAAACGA   1396
                     .||.||.||.||.||.|||||||||||||||||.||.|||||.|||||..
BL02187___yus   1341 GAGCGTCGCCTTTTTTATGAACATTCACGCAAGGTTCCTATTTGAAACCC   1390

BSNT_04889      1397 GATTCTACGAGGAACGAAAGCGGGGAGTGGTACCGGCCAGCCGCTTGAAT   1446
                     |.||||||||.||||||||....||.||.|||.|.|||.|..|..||||.
BL02187___yus   1391 GCTTCTACGATGAACGAAAAAACGGCGTCGTATCCGCCGGAAGGCTGAAC   1440

BSNT_04889      1447 GAGCTGATGGAAGAGGCACAAAGAGAGGCATACTGCAATGCGTTAGAAGA   1496
                     ||.|||||||||||.||.||.|.|||.||.|..|||..||||.|.|..||
BL02187___yus   1441 GAACTGATGGAAGAAGCTCAGAAAGAAGCGTTTTGCGGTGCGCTTGGCGA   1490

BSNT_04889      1497 ATATCATCCGCTTTTTTGGGCATCAAAACTTCACTTTCACATCACGAGGG   1546
                     .|||||||||..|||||||||||||||.|||||.|||.|.||.|||...|
BL02187___yus   1491 GTATCATCCGTATTTTTGGGCATCAAAGCTTCATTTTTATATTACGTCTG   1540

BSNT_04889      1547 TGCCGTTTTACAATTTCCCTTATACATTCGGCTACCTATTTTCTCTTGGC   1596
                     |.||||||||||||||.||||||||.|||||||||.|.|||||.||||||
BL02187___yus   1541 TTCCGTTTTACAATTTTCCTTATACGTTCGGCTACTTGTTTTCGCTTGGC   1590

BSNT_04889      1597 ATTTACGCGCTGGCGCTTGAAGAAAAA----AATGCATTTGAAGAGAAGT   1642
                     ||||||||||..|||||    ||||.|    ...|||||||||||.||.|
BL02187___yus   1591 ATTTACGCGCAAGCGCT----GAAAGAGGGTGCGGCATTTGAAGAAAAAT   1636

BSNT_04889      1643 ATATGGCGCTATTGCGCGATACTGCTTCTATGACAGTGGAGGATTTGGCG   1692
                     ||||.||.||.||....|||||.||.||.|||.|.||.||.||..||||.
BL02187___yus   1637 ATATTGCTCTCTTAAAAGATACAGCCTCCATGTCTGTTGAAGAACTGGCC   1686

BSNT_04889      1693 ATGAAGCATTTGGGCGCTGACATCACGAAGCGTGATTTTTGGGAGAATGC   1742
                     |||||||||.|.|||||.||..|.||||||||.|||||.|||||....||
BL02187___yus   1687 ATGAAGCATCTCGGCGCCGATCTGACGAAGCGGGATTTCTGGGAAGCGGC   1736

BSNT_04889      1743 CATCAAGCTGGCTGTGCGTGACGCCGAAACCTTTTT-GCAAATGACCGAA   1791
                     |||..|||.||||||.||.||.||.|||.|.||||| || .|||||..||
BL02187___yus   1737 CATTCAGCCGGCTGTCCGAGATGCAGAAGCATTTTTAGC-GATGACATAA   1785

BSNT_04889      1792 TCTTAA   1797
                           
BL02187___yus   1785 ------   1785


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