Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00767 and BL02188

See Amino acid alignment / Visit BSNT_00767 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:24
# Commandline: needle
#    -asequence dna-align/BSNT_00767___dctP.1.5803.seq
#    -bsequence dna-align/BL02188.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00767___dctP-BL02188.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00767___dctP-BL02188.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00767___dctP
# 2: BL02188
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1527
# Identity:     732/1527 (47.9%)
# Similarity:   732/1527 (47.9%)
# Gaps:         543/1527 (35.6%)
# Score: 1365.0
# 
#
#=======================================

BSNT_00767___      1 ATGAAACTGTT-----TAAAAATTTAACAGTTCAGGTCATAACCGCGGTC     45
                     |||||   |||     .|||||||              ||.|.|||..|.
BL02188            1 ATGAA---GTTAGCAACAAAAATT--------------ATTATCGCTCTA     33

BSNT_00767___     46 ATCATCGGGGTCA-TTGTCGG------GCTG---GTC---TGGCCGGAT-     81
                     .|..||||.| || |.|||||      .|||   |||   |..|||||| 
BL02188           34 TTGCTCGGTG-CAGTCGTCGGTATTATACTGAACGTCACTTCACCGGATT     82

BSNT_00767___     82 --GTCGGCAAAGAAATGAAACCGCTTGGCGATACATTTATCAA-------    122
                       .||.||||            ||||   .||||||||.|  |       
BL02188           83 TATTCAGCAA------------GCTT---AATACATTTTT--ATTCGGGC    115

BSNT_00767___    123 CGCT-------------GTTAA---AAT---GGTGATC---GCACCAATT    150
                     ||||             .||||   |||   |.||.||   |.|||.|||
BL02188          116 CGCTCGGCACGATCTTCCTTAACTTAATCAAGATGCTCGTTGTACCGATT    165

BSNT_00767___    151 ATTTTCTTCACAATCGTTCTC--------GGGATTGCAAAAATGGGCGAT    192
                     .|||||||        |||||        |||.|.|||..|.|.||.|||
BL02188          166 GTTTTCTT--------TTCTCTGACTTTAGGGGTAGCAGGACTTGGAGAT    207

BSNT_00767___    193 ATGAAGAAGGTTGGAAAAGTAGGGGGAAAAGCGTT--------------T    228
                     ...|||||..|.||.|.|.|.||.|..|||.||.|              |
BL02188          208 CCAAAGAAATTGGGCAGAATCGGTGCCAAAACGATTTCTTTCTTTTTAAT    257

BSNT_00767___    229 ATCTATTTCGAGGTTGTCACCACCCTCGCACTCATTATCGGTTTATTTGT    278
                     |.|||.|.|.|  |||.||            |.||||||||   |.||| 
BL02188          258 AACTACTGCAA--TTGCCA------------TTATTATCGG---ACTTG-    289

BSNT_00767___    279 CGTCAATATTATGAAGCCGGGTGCGGGTCTTGATTACAGCAAGCTTGAAA    328
                           |.|||           |||    |||.|  ||.|||.|.||.||
BL02188          290 ------TTTTA-----------GCG----TTGGT--CATCAAACCTGGAA    316

BSNT_00767___    329 AGGGAGATGTATC---ACA----ATACA-------CGCAAAATGGCGGTC    364
                     .|        |||   |||    |||||       ||.||.||     ||
BL02188          317 CG--------ATCGGAACATATGATACAAGCGCTGCGGAATAT-----TC    353

BSNT_00767___    365 AG----GGAATCGACTGGATTGAATTTGTTACAC--------ACATTGTT    402
                     ||    |.||.||.|    ..|.||||.|.||||        |.||..||
BL02188          354 AGCCCAGAAAGCGCC----AAGCATTTCTGACACGCTTTTGAATATCATT    399

BSNT_00767___    403 CCATCCAATATGGTTGATGCCTTCGCAAAAGGGGACATTTTGCAGGTCTT    452
                     ||..|.||...||||.|.||..|.||..||||..|.||..||||..||  
BL02188          400 CCGACAAACCCGGTTCAGGCAATGGCTGAAGGAAATATGCTGCAAATC--    447

BSNT_00767___    453 ATTCTTTTCTATTCTTTTCGGAGTGGGTCTTGCGGCATTA--------GG    494
                     |||..||||  |.|.|||.|  ||.|||||  |||.||||        ||
BL02188          448 ATTGCTTTC--TCCATTTTG--GTCGGTCT--CGGAATTACGATGCTGGG    491

BSNT_00767___    495 CGAAAAAG-GGA----------AAAGCGTCATTGATTTCTTCGACAAGGT    533
                     |.|||||| |||          |||  ||..||||        |||.|||
BL02188          492 CAAAAAAGCGGACGCTCTTCTCAAA--GTGGTTGA--------ACAGGGT    531

BSNT_00767___    534 TTCTCACGTTTTTTTCAAAATTATCGGCTACATTATGCGTGCCGCGCCAA    583
                                       ||..|||.|    ||.||  ||.||..|.|||
BL02188          532 ------------------AACGATCTG----ATGAT--GTACCTGGTCAA    557

BSNT_00767___    584 TCGGGGCA-----TTCGGGGCG-ATGGCGTATACAATCGGACACTTCGGG    627
                     ||..|.||     ||||.|.|| |.||    |||..||          ||
BL02188          558 TCTTGTCATGAAGTTCGCGCCGTACGG----TACGTTC----------GG    593

BSNT_00767___    628 CTCGATT-------CCATC--AAACC---GCTGGCAAGC--TTAATG--A    661
                     ||.||||       |.|||  ||.||   |||||.|.||  ||||.|  |
BL02188          594 CTTGATTGCCGGGGCAATCGGAAGCCAGGGCTGGGACGCCATTAAAGCAA    643

BSNT_00767___    662 TGTCTGTTTATATTA----CGATGTTC-----CTGTTCGTATTTGTTGCT    702
                     ||....|||||||.|    ||.|.|||     ||||||  |||       
BL02188          644 TGGGGCTTTATATGATCGTCGTTATTCTGGCGCTGTTC--ATT-------    684

BSNT_00767___    703 TTAAATATCATCTGCA-AGCTTTACG-------GATTCAGCCTGTGGAA-    743
                        .|||.||||..|| |    ||||       ||||..||.|.|||.| 
BL02188          685 ---CATACCATCGTCACA----TACGGCGCAGCGATTGCGCTTCTGGCAA    727

BSNT_00767___    744 ----TTACCTTCGC-----TTCATTAAGGAT------GAGCTTCTGATCG    778
                         ..|||  |||     |||.||||.|||      |||.||      .
BL02188          728 AGCGGAACC--CGCTCACATTCTTTAAAGATTTTTCAGAGGTT------A    769

BSNT_00767___    779 TGCTTG--GCACAAGCTCTTC--------------CGAATCGGTGCTTCC    812
                     ||||||  ||       ||||              |.|..||..||||||
BL02188          770 TGCTTGTTGC-------CTTCAGTACGTCCAGCAGCAACGCGACGCTTCC    812

BSNT_00767___    813 GCGTAT-GATGGAT-------AAAATGGAGCGCTACGGCTGTTCCAAATC    854
                     | ||.| |||||||       |||   ||..|||  |...||||||.|.|
BL02188          813 G-GTTTCGATGGATGTCGCTCAAA---GAAAGCT--GAAAGTTCCAGAGC    856

BSNT_00767___    855 CGTTGTCGGGCTAGTTATTCCGAC-----GGGCTATTCGTTTAACCTCGA    899
                     ||.|.||..|||  ||.|.|.|.|     |.||||  ||.|.|||.|.||
BL02188          857 CGATCTCAAGCT--TTGTCCAGCCGCTCGGAGCTA--CGATCAACATGGA    902

BSNT_00767___    900 CGGCAC----ATCCATTTATTTAT-CAA----TGGCGACTGTCTTTCTGG    940
                     |||.||    |||         || |||    ||||.||.||||||.|.|
BL02188          903 CGGAACGGCGATC---------ATGCAAGGGGTGGCAACAGTCTTTATCG    943

BSNT_00767___    941 CACAGGTGTTTGG-AGTAGAC------CTCAGCATCGGCCAGCAAATTAC    983
                     |.|||||||..|| |.| |||      |||| ||     ||||...|.|.
BL02188          944 CTCAGGTGTACGGCAAT-GACCTGTCGCTCA-CA-----CAGCTGTTGAT    986

BSNT_00767___    984 GATTATCCTC------GTTCTGATGCTGACATCGAAGGGAGCGGCAGGTG   1027
                     |.||.|.|||      ||.||  |||...||||    |||.|.||.||||
BL02188          987 GGTTGTTCTCACGGCAGTGCT--TGCCAGCATC----GGAACAGCGGGTG   1030

BSNT_00767___   1028 TGACAGGAAGCGGATTTATCGTCCTTGCC--------TCAACGCTGTCAG   1069
                     |..|.||...||||.|.||..|.||.|||        ||||         
BL02188         1031 TTCCGGGTGTCGGACTCATTATGCTCGCCATGGTTCTTCAA---------   1071

BSNT_00767___   1070 CGCTGCAG--GTCATTCCGCTGGAGGGTCTTGCACTCCTGCTCGGGGTCG   1117
                         .|||  |.|.||||..|.|||||..||||.||..|..|.||..|.|
BL02188         1072 ----ACAGTTGGCCTTCCAGTTGAGGGAATTGCGCTAATATTGGGAATTG   1117

BSNT_00767___   1118 ACCGTTT------CATGAGT-GAAGGAAGAGCCATTGTGAACCTAATCGG   1160
                     ||||..|      |||||.| |.|.|    ||   |||.||...||..||
BL02188         1118 ACCGACTTCTGGACATGATTCGTACG----GC---TGTCAATACAACAGG   1160

BSNT_00767___   1161 AAACGGAATCGC--CA----CGATCATTGTTGCCAAAAGCGAAAATGAAT   1204
                        ||  || ||  ||    ||.||||.||..||.|.|..|||||     
BL02188         1161 ---CG--AT-GCAGCATGTGCGGTCATCGTCACCGAGACGGAAAA-----   1199

BSNT_00767___   1205 TTGATGAAGCA----AAAAGCGTAG--------AGGCTGTTGAAG---GC   1239
                          |||.||    ||||.||.||        ||     |||||   .|
BL02188         1200 -----GAAACACGGCAAAATCGAAGCCCCTCATAG-----TGAAGTGTCC   1239

BSNT_00767___   1240 ATGAAAAAAATGAAAACAGCAGTCTGA   1266
                     .||.||                     
BL02188         1240 GTGTAA---------------------   1245


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