Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00772 and BL02190

See Amino acid alignment / Visit BSNT_00772 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:24
# Commandline: needle
#    -asequence dna-align/BSNT_00772___ydbK.1.5803.seq
#    -bsequence dna-align/BL02190___ydbK.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00772___ydbK-BL02190___ydbK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00772___ydbK-BL02190___ydbK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00772___ydbK
# 2: BL02190___ydbK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 829
# Identity:     505/829 (60.9%)
# Similarity:   505/829 (60.9%)
# Gaps:         122/829 (14.7%)
# Score: 1342.5
# 
#
#=======================================

BSNT_00772___      1 TTGTCTAAATTAATTTGGAATGAACATATGAAACTTTTTAATCGGAAGGT     50
                     .|||.||||.|.|||...||.||.|||.|.|||.|..|.||.||.||.||
BL02190___ydb      1 ATGTTTAAACTGATTCAAAACGAGCATGTTAAATTGCTGAAGCGCAAAGT     50

BSNT_00772___     51 CACTTTGGTTTCCCTTATCCTGATGGCTGTCTTTCAATTCTTCATGGCAT    100
                     .||.||.||.||.||....|||||.|..|||||||||||..||.|.||..
BL02190___ydb     51 AACATTTGTATCGCTGGCGCTGATTGTAGTCTTTCAATTTCTCCTCGCGC    100

BSNT_00772___    101 TGATCATTAAACGGATTGTCATCAGTGCCGGAACAGATGAAAACTTCATC    150
                     |.||||..|||.|.||..|.||..|.|||||..||||.||..|.||.|||
BL02190___ydb    101 TCATCACCAAAAGAATCCTGATGGGCGCCGGGGCAGAGGATCATTTTATC    150

BSNT_00772___    151 GGCTATTTATCGTATACACCGAGCCTGAACATTTTGCTGCA--GGCTTTA    198
                     ||||||||.||.|..||.||.|.||||||.||..|..||||  |||||| 
BL02190___ydb    151 GGCTATTTTTCATTCACCCCAAACCTGAATATCCTCTTGCAGGGGCTTT-    199

BSNT_00772___    199 ACGATCGTAATTGCAGCAACAATTGTTTCGATGGAATTTGATAAAAAGAC    248
                      ||||.||..|.||.||..|||||.|.||..|.||||.||||||||||||
BL02190___ydb    200 -CGATTGTGGTGGCGGCTTCAATTATATCCTTTGAATATGATAAAAAGAC    248

BSNT_00772___    249 GATCAAATTTTTGCTCATTCGTCCGGTTAAACGCCAAAAG---GTCTTTT    295
                     ||||||.||||||||.||.||.||.||.|.|.|..|||||   .||.|| 
BL02190___ydb    249 GATCAAGTTTTTGCTGATCCGCCCTGTCAGAAGAGAAAAGATTCTCGTT-    297

BSNT_00772___    296 GGTCAAAATTAATCAC-AGTCGTGATGGTCAGCTTCTATTTG--------    336
                       ||.||||...|.|| || ||||.|.|..|||    |||||        
BL02190___ydb    298 --TCTAAATACGTGACGAG-CGTGCTCGCAAGC----ATTTGGCTTTTTA    340

BSNT_00772___    337 -TATTTGGCATACTAC--ATTCTGGCATTATTATTCGGTCTCGTGTTTTT    383
                      ||||     ||||||  |||.|  |..||||.|||||.||..|.|||||
BL02190___ydb    341 TTATT-----TACTACGGATTTT--CTATATTGTTCGGCCTGCTCTTTTT    383

BSNT_00772___    384 TGGCACATCGGTGA--CT----------GCGGA----------ATCAAAG    411
                     .|||      ||||  ||          |||||          |||||  
BL02190___ydb    384 CGGC------GTGAAGCTCGACGAAAAAGCGGAGCCGCTCTTTATCAA--    425

BSNT_00772___    412 ACATTGCTGGTCAACACTTTGGCGCTGATCGGGTCAAACTGGCTTGAAGC    461
                         |.| |||.||.|         ||||||||.|..|.|||.|||||  
BL02190___ydb    426 ----TAC-GGTGAAAA---------TGATCGGGACGCAGTGGTTTGAA--    459

BSNT_00772___    462 TGTA---ATGATGGGATTATTCGGGCTGCTTTGTTCTTCGC--TGTTCCG    506
                      |||   |||||||..|.|||.|.|.|  |||.|.||..||  |.|||..
BL02190___ydb    460 -GTATGGATGATGGTTTCATTTGCGTT--TTTATGCTCGGCATTATTCAA    506

BSNT_00772___    507 CAACAGCGCGGT-AGCAGTTGTTGTTTCTTTTGTCGTTTTATACGGAGCG    555
                     .|.|||||||.| |||| |..|.||.||..|||||||..|.|||||.||.
BL02190___ydb    507 AAGCAGCGCGCTCAGCA-TCATGGTGTCGATTGTCGTGCTGTACGGCGCC    555

BSNT_00772___    556 AGTACACTTGTTCAGCTCATGAAGTTGTTTGAAAACAAGTGGGGCAGCTT    605
                     |..|..|||||...|.|.|||..||..||.|||||...|...||||..||
BL02190___ydb    556 AAAATGCTTGTGACGATTATGGCGTATTTGGAAAAGCCGCTCGGCAAGTT    605

BSNT_00772___    606 TTTGCTTTTTGCGAACACAGACTTTACGCAATACGGAAGCGGAGAGACA-    654
                     |||..|.||.||.||.||.||.||.|||||.||||   .|||||||.|| 
BL02190___ydb    606 TTTATTGTTCGCCAATACCGATTTAACGCAGTACG---CCGGAGAGGCAA    652

BSNT_00772___    655 --GCGTTGTTTTCAGGCATGACGCCATTGTTCTCAATTGGAATTCTCATC    702
                       .||.|.|||.|.||.||||||||.||.|||||         .|||.||
BL02190___ydb    653 AGCCGCTTTTTGCCGGGATGACGCCTTTATTCTC---------GCTCTTC    693

BSNT_00772___    703 ATACATGCCATATTCTTCATCGTTGTT------------GGC-TGGTGGT    739
                     || |.| |..|||.|.|| ||| ||||            ||| ||||||.
BL02190___ydb    694 AT-CGT-CTTTATCCATC-TCG-TGTTTTTTCTCGGAACGGCATGGTGGG    739

BSNT_00772___    740 GCTTCTGTAAACGGGATGTTCGGGTCTAA    768
                     ||||.||.|||||.|||.|...|||.|||
BL02190___ydb    740 GCTTTTGCAAACGCGATATGAAGGTATAA    768


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_00772 and BL02190

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
