Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00777 and BL02192

See Amino acid alignment / Visit BSNT_00777 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:24
# Commandline: needle
#    -asequence dna-align/BSNT_00777___ydbM.1.5803.seq
#    -bsequence dna-align/BL02192___ydbM.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00777___ydbM-BL02192___ydbM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00777___ydbM-BL02192___ydbM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00777___ydbM
# 2: BL02192___ydbM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1200
# Identity:     824/1200 (68.7%)
# Similarity:   824/1200 (68.7%)
# Gaps:         105/1200 ( 8.8%)
# Score: 2701.0
# 
#
#=======================================

BSNT_00777___      1 --ATG-TCATTATTTATACAAAACGATCAA---CAGCGGCAATGGATGGA     44
                       .|| |||.|||||.| .||||||  .||   ||||.|.|||||.|.||
BL02192___ydb      1 GTGTGTTCAATATTTGT-GAAAACG--GAAAGGCAGCAGGAATGGCTCGA     47

BSNT_00777___     45 GAAAATCGGACGGATT-GCGGATGAATTTCAGCAAACTGCTGCTGAAGAT     93
                     .||||||||| ..||| ||||||||||||.||.||||.||.||..|..||
BL02192___ydb     48 TAAAATCGGA-AAATTGGCGGATGAATTTGAGAAAACAGCAGCGTACTAT     96

BSNT_00777___     94 GACGAACAGGGACGTTTTCCTGCAGAGAAAATACAAAAACTGCGTGATGC    143
                     ||||||||.|.||..|||||.|||||..|.||.|||||.|||||.|||.|
BL02192___ydb     97 GACGAACATGCACAATTTCCCGCAGAACATATTCAAAAGCTGCGGGATTC    146

BSNT_00777___    144 TGGGTATACAGCATTAACATTGCCGG--CATCTCATGGCGGAGGGGGCAT    191
                     .||.||.|||||..|.||  .|.|||  .|..|.|.||.||||..|||||
BL02192___ydb    147 AGGCTACACAGCGCTGAC--GGTCGGAAAAGATTACGGAGGAGAAGGCAT    194

BSNT_00777___    192 TTCTGTTTACGATATGCTCCTGTTTCAAGAGCGGCTTGCACGGGGAGATG    241
                     |||..|.|||||||||||..|||||||.||.||||||||....|||||.|
BL02192___ydb    195 TTCGCTCTACGATATGCTTTTGTTTCAGGAACGGCTTGCCAAAGGAGACG    244

BSNT_00777___    242 CTCCGACGGCTCTTAGCATCGGCTGGCATTTGAGCGTGATCGGGGAGCTT    291
                     ..|||||||||||.||||||||||||||.||.||||||||.|||||.||.
BL02192___ydb    245 GACCGACGGCTCTCAGCATCGGCTGGCACTTAAGCGTGATGGGGGAACTG    294

BSNT_00777___    292 GGAGAAGGCAACAGCTGGGATGAAGACGTATTTGCATTTGTTGCCAAGGA    341
                     |..||.||.|||||||||||....||.||.|||.|||...||.||.|.||
BL02192___ydb    295 GCGGAGGGAAACAGCTGGGACCGGGATGTGTTTTCATCGCTTTCCCATGA    344

BSNT_00777___    342 AGTCCA--AAACGGAGCCGTCATTAACAGGGCGGCGACTGAAGCGAAAAC    389
                     ||  ||  |||.||.||..|.||.|||||.|||||.|.|||||||.|.||
BL02192___ydb    345 AG--CATTAAAGGGCGCGCTGATCAACAGAGCGGCAAGTGAAGCGCAGAC    392

BSNT_00777___    390 CGGAAGCCCGACAAGAGGAGGGCGTCCCGGTACACACGCCGTCAAAAAGG    439
                     .||.|||||||||||||||||.||.|||||.||.||.||.|||||||||.
BL02192___ydb    393 AGGCAGCCCGACAAGAGGAGGACGCCCCGGAACCCATGCAGTCAAAAAGA    442

BSNT_00777___    440 ATGGCAAATGGGCAGTGAACGGGAGAAAAACCTTTACGACGATGTCACAG    489
                     |.|||...|||...||.|||||..|.|||||.||.||.||||||||.|.|
BL02192___ydb    443 ACGGCGGCTGGATTGTAAACGGCCGTAAAACATTCACAACGATGTCTCCG    492

BSNT_00777___    490 GCTCTGGATTATTTTTTAGTAACCGCATGGATTGAGGACAAACAAACAAC    539
                     |.|||.||.||||||.|.||.|||||.||||||||.||.||.||||..|.
BL02192___ydb    493 GTTCTCGACTATTTTCTTGTCACCGCTTGGATTGAAGAGAAGCAAATGAT    542

BSNT_00777___    540 AGGCGTGTTTC-TCATTCATAAAGATGATCCC----GGCTTGTCGATTGA    584
                     .||||| |||| |.||.||||||||||    |    ||||||.|.||.||
BL02192___ydb    543 CGGCGT-TTTCTTGATCCATAAAGATG----CGGAAGGCTTGGCAATAGA    587

BSNT_00777___    585 AGAAACGTGGGATATGATGGCGATGCGGGCGTCTGGGAGCCATGACCTTG    634
                     ||||||||||||||||..|||||||.|||...|.||.|||||.||..|.|
BL02192___ydb    588 AGAAACGTGGGATATGGCGGCGATGAGGGGCACGGGAAGCCACGATTTGG    637

BSNT_00777___    635 TACTGA---------------ACGAAGTCATGCTTGATGAGAATAAGCTG    669
                     |.||||               |||||..||||||||.||      |.|||
BL02192___ydb    638 TGCTGACCGATGTCCGTCTGGACGAATCCATGCTTGTTG------AACTG    681

BSNT_00777___    670 GTGGAACTGCTTCAAGGGCCTCGCGGAGCTAAGCCGAAT----GGCTGGC    715
                     .|||  |||.|..|||..||       |.|||    |||    |||||||
BL02192___ydb    682 TTGG--CTGGTAAAAGAACC-------GATAA----AATCAACGGCTGGC    718

BSNT_00777___    716 TGCTTCACATTCCGGCGATTTATCTTGGTGTGGCTCAAGCTGCTCGTGAC    765
                     |||||||.||.|||||..|.|||.|.||..|.||.|||||.||..|.|||
BL02192___ydb    719 TGCTTCATATACCGGCTGTCTATTTAGGGATCGCACAAGCAGCGAGAGAC    768

BSNT_00777___    766 TATGCAGTGCAATTTGCATCTGAGTATTCTCCAAACAGCTTGAATGGACC    815
                     |||||.||.|||||||||...||.|||...||.|||||||||||.||.||
BL02192___ydb    769 TATGCTGTCCAATTTGCAAAAGACTATCAGCCGAACAGCTTGAAAGGTCC    818

BSNT_00777___    816 GATCAAGAATGTCCCGGCCGTACAGCAAAGAACA----GGCGAAATGGAG    861
                     ||||||..|.||.||.||.||.||||    ..||    ||||||||.||.
BL02192___ydb    819 GATCAAAGAGGTGCCCGCTGTTCAGC----GCCATATCGGCGAAATCGAT    864

BSNT_00777___    862 CTTGAACTGCTCAATGCCAGACACTTTCTTTTCCATATCGCTCAATTGTA    911
                     ||.|||||..|.||.|||.|.||||||.|.|..|||.|.||..|..|.||
BL02192___ydb    865 CTGGAACTCATGAAAGCCCGCCACTTTATGTATCATGTTGCAGAGCTTTA    914

BSNT_00777___    912 TGACGATCCGGAGCGGCGTCCACACTTGACAAGCGAGCTCGGTGCGGCTA    961
                     |||.|||||||||||.||..|.|..||||||.|.|||||.||.||||.||
BL02192___ydb    915 TGATGATCCGGAGCGCCGCGCCCTTTTGACAGGTGAGCTTGGAGCGGTTA    964

BSNT_00777___    962 AGCATATCGTCACAAACGCTGC----GCTGTCTGTTGTTGATAAAGCGAT   1007
                     ||||.|..||.||.||..|.||    |.||||    ||.||.||.|||||
BL02192___ydb    965 AGCACACGGTAACGAATACGGCCATTGATGTC----GTAGACAAGGCGAT   1010

BSNT_00777___   1008 GAGAATTGTCGGGGCCAAAAGCCTGGAACGAACCAACCCGCTTCAGCGCT   1057
                     ||||.|.|||||.||.|||||.||.|.|.||||.||||||||.||..|.|
BL02192___ydb   1011 GAGAGTCGTCGGAGCGAAAAGTCTCGCAAGAACGAACCCGCTCCAAAGAT   1060

BSNT_00777___   1058 ATTACCGTGATGTGCGCGCCGGTCTTCACAACCCGCCGATGGATGACGCC   1107
                     ..|||||.|||||.||.||.||.||.||||||||||||||||||||    
BL02192___ydb   1061 TCTACCGCGATGTCCGGGCGGGCCTCCACAACCCGCCGATGGATGA----   1106

BSNT_00777___   1108 GTGATACA-----CAAGCTGGCGGCTGAAGCGTTTG-AGTCA--TAA---   1146
                      ||..|||     ||||||.||.|  |||    ||| |.|||  .||   
BL02192___ydb   1107 -TGCGACAATCGCCAAGCTTGCAG--GAA----TTGCATTCAGCGAATAG   1149


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