Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00789 and BL02199

See Amino acid alignment / Visit BSNT_00789 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:25
# Commandline: needle
#    -asequence dna-align/BSNT_00789___ydbT.1.5803.seq
#    -bsequence dna-align/BL02199___ydbT.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00789___ydbT-BL02199___ydbT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00789___ydbT-BL02199___ydbT.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00789___ydbT
# 2: BL02199___ydbT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1624
# Identity:     998/1624 (61.5%)
# Similarity:   998/1624 (61.5%)
# Gaps:         287/1624 (17.7%)
# Score: 2770.0
# 
#
#=======================================

BSNT_00789___      1 ---ATGTCTGAACCGAAACGCCTGCACCCGGCGGCAGTCATTTTGAA-TT     46
                        |||||||||||||.||||.|||||||.||.||.||||||.|.|| ||
BL02199___ydb      1 ATGATGTCTGAACCGAGACGCATGCACCCTGCCGCCGTCATTCTCAACTT     50

BSNT_00789___     47 TAT-----GCCATACCATTATTCAAACGATAAAAAATATCATTCTGCCAT     91
                     |||     |||      ||.||.|.|||.|.||||||.|.||     |||
BL02199___ydb     51 TATCAAAGGCC------TTGTTGAGACGGTTAAAAATTTTAT-----CAT     89

BSNT_00789___     92 TCTTTTTTGTGT----ATATTGTCAATTCAAAC-CATACTGTC----CGT    132
                     ||..|||.|.||    ||.||.|.||.||||.| ||.||.|||    .|.
BL02199___ydb     90 TCCATTTGGCGTGGTGATTTTTTTAAATCAATCGCAAACAGTCAAAATGA    139

BSNT_00789___    133 TTTTACGGAGCCATTGCGCTCGG-TGTGCTGTTCATC-TGGCTT--GTAG    178
                     |       |||.||.|| |.||| .||||||||..|| |.||||  ||.|
BL02199___ydb    140 T-------AGCGATCGC-CGCGGCCGTGCTGTTTTTCATTGCTTTGGTTG    181

BSNT_00789___    179 CGGCAAGCATTATCAAATGGAGAAGGTTTACCTATCGAATTGAAGATGAT    228
                     .|.|.|||||.|||||.|||||.|..|||||.||.||.||.|||||.|||
BL02199___ydb    182 TGACGAGCATCATCAAGTGGAGCAAATTTACATACCGTATCGAAGAGGAT    231

BSNT_00789___    229 GAATTTAGAATTGAAGAAGGCTTATTTGTTACGAAAAAGCGATACATATC    278
                     |||||..||||.||.||||||||..|...||.||||||..|.||.||..|
BL02199___ydb    232 GAATTGCGAATAGAGGAAGGCTTGATCAATAAGAAAAAAAGGTATATTCC    281

BSNT_00789___    279 GATTGATCGGATTCAAACAATGAATACGAGCGCGGGCCTTGTCCAGCAAA    328
                     |||.||.|||||||||||.||.||.||.|||||.|||||..|.||.||||
BL02199___ydb    282 GATCGAACGGATTCAAACGATCAACACAAGCGCAGGCCTCATTCAACAAA    331

BSNT_00789___    329 TCTTTAAGCTTGTGAAGCTGCAAATTGAAACAGCAGGCGGAGGCAAGGAG    378
                     |.||.|||||.||||||||.|||.|.|||||.|||.|||||||.|.|||.
BL02199___ydb    332 TGTTCAAGCTGGTGAAGCTTCAAGTCGAAACGGCAAGCGGAGGAACGGAA    381

BSNT_00789___    379 GCAGAAGCCGTTCTTTC------TGCTATTTCTGTTGAAGAAGCGGAACG    422
                     ||.||||      ||||      .||.|||.|....|.||||||.|||||
BL02199___ydb    382 GCGGAAG------TTTCCCTGGTCGCCATTACCCAGGCAGAAGCCGAACG    425

BSNT_00789___    423 CATCAAAGAAGCTGTCTTT-----AAGAAAAAAGCG--CAAAGA------    459
                     .||..|..||||  .||||     |.||||||||||  ..||||      
BL02199___ydb    426 TATTCAGCAAGC--GCTTTTCGAAAGGAAAAAAGCGGCGGAAGACACGGG    473

BSNT_00789___    460 ---CGA----------------GAAAATGAACTTGATGAAGAACGGC--T    488
                        |||                |||   |||..||.||||||  |||  .
BL02199___ydb    474 GACCGATGTCCCGGTTCCGCTGGAA---GAAACTGCTGAAGA--GGCGGA    518

BSNT_00789___    489 TGAACCTGAAGAGGAGTTGGTTCCGGCCGT--TGAGGTGCAAGAGCACTA    536
                     .|||.|.||||||         |||   ||  |||.||.|||        
BL02199___ydb    519 GGAAGCGGAAGAG---------CCG---GTAATGATGTACAA--------    548

BSNT_00789___    537 TCGCATGAACGCGAAAGAATTGCTCTT---GGCCGCTTCTACCTCCGGCG    583
                        .||||.||...|.||   ||||||   .||||||||.|||||..|||
BL02199___ydb    549 ---AATGACCGGCCAGGA---GCTCTTAACCGCCGCTTCAACCTCAAGCG    592

BSNT_00789___    584 GAATCGGAGTCATTATCTCCGCTGTATTTGCACTTATTTC---CCAGCTT    630
                     |.|||||.||.|||||.||.|..|||||  |.|||.||||   |.|| |.
BL02199___ydb    593 GCATCGGCGTTATTATTTCAGGGGTATT--CGCTTTTTTCACTCAAG-TC    639

BSNT_00789___    631 GATGA--------AGTGCTGCCAATGGATTGGTTATTTGATAAATTTTCC    672
                     |||||        |.|        ||||||||.|.|.|||....|||.|.
BL02199___ydb    640 GATGATTTCTTTGATT--------TGGATTGGCTGTATGACCGCTTTGCT    681

BSNT_00789___    673 TTCCTT----CAGC-------ACGCCAGTATTGGTATTTACGCGGTACTC    711
                     ||  ||    ||||       .|||| ||..|.|.|||..|        |
BL02199___ydb    682 TT--TTTGAACAGCGCAGGTGCCGCC-GTCATCGCATTGGC--------C    720

BSNT_00789___    712 GTTTTTATCGGTT----TATTTATCGCCTGGATTTTCAGCATCG-CGGGC    756
                     |..|||    |||    |.||.|||||.|||.|..||||||||| |||| 
BL02199___ydb    721 GCCTTT----GTTGCCCTTTTCATCGCATGGCTGCTCAGCATCGTCGGG-    765

BSNT_00789___    757 ATGATGTTTAGATACGCGAACTTTCAAATCATAAAAAAAGAGCAGGAACT    806
                     |||.|.||.|.|||.|||||.|||....||.|....||||||.|.|||.|
BL02199___ydb    766 ATGCTTTTGAAATATGCGAATTTTACTGTCGTGCGTAAAGAGAAAGAAAT    815

BSNT_00789___    807 GGTGATTTCAAGGGGAATTATTGAAAAACATCAAGTCACGATTCCGTT--    854
                     .||.|||||.||.||..|.||||||||.||.|||.|||||||||||.|  
BL02199___ydb    816 CGTCATTTCCAGAGGGCTGATTGAAAAGCAACAAATCACGATTCCGCTCC    865

BSNT_00789___    855 -GCGAAAAATACAAGCCATTAAAATCAAAGAAAATATCATTCGCCAGCTT    903
                      |||   .||.|||||.|||||||||||.||.|...|.||..|.||||.|
BL02199___ydb    866 AGCG---GATTCAAGCGATTAAAATCAAGGAGAGCCTGATCAGGCAGCCT    912

BSNT_00789___    904 TTCGGATTTGTAACGGTGTCTATCGTCAGCGCAGGAGGCGGCGACCGGGA    953
                     ||.|||.|||.|.|.||..|.||||||||||||||.||...||.||.|||
BL02199___ydb    913 TTTGGACTTGCAGCCGTCACGATCGTCAGCGCAGGCGGAAACGTCCTGGA    962

BSNT_00789___    954 AAAAGAAGAAGGCGCTTTGA-CCATTCTCTTTCCAATGATTCATAAAAAA   1002
                     |.||||..||       |.| ||||..|.||||||||.| |||..|||||
BL02199___ydb    963 AGAAGATAAA-------TCAGCCATCTTATTTCCAATCA-TCAGCAAAAA   1004

BSNT_00789___   1003 AAGCTTC------CGTACATGCTC--CGAA--CATTTACGCCGGAATATA   1042
                     ||...||      |||     |||  ||||  ||||    |||||.|||.
BL02199___ydb   1005 AATAATCAATCAGCGT-----CTCGGCGAATTCATT----CCGGATTATG   1045

BSNT_00789___   1043 CGCTGGAAGAAAACTGCCGA-------CGCCTGCCGCGGCGCGCGTTGAA   1085
                     |||.||||||       |||       |||.|||||...||||||.||..
BL02199___ydb   1046 CGCCGGAAGA-------CGATTTGAACCGCTTGCCGAAACGCGCGCTGCG   1088

BSNT_00789___   1086 ACGCTATTTGTTCCG----TTCTGTCATTTTTTCAC--TCTTTTTGATCA   1129
                     .||||||.|..|.||    |.|||.|...||.||.|  ||.||..|  |.
BL02199___ydb   1089 CCGCTATATCCTGCGCGCATCCTGGCCGGTTCTCGCCGTCGTTCCG--CT   1136

BSNT_00789___   1130 TTCCGTTATGTATCTTCTTTCAGCCATGGGGCTATCTGTCAGTCATCCTG   1179
                     ||||.||.||       ||||.|||||||||||||.||||.|...|..||
BL02199___ydb   1137 TTCCATTCTG-------TTTCCGCCATGGGGCTATTTGTCCGCTGTATTG   1179

BSNT_00789___   1180 CTGCCGATAGAGTTGCTCTTCGGCTATCTCGCGTATAAAGAGGCTGCATG   1229
                     .|.||..|..|.|.|.||.||||||||.||.|.||....||.||.|.|||
BL02199___ydb   1180 ATTCCTTTTTACTGGATCATCGGCTATTTCTCATACCGCGATGCCGGATG   1229

BSNT_00789___   1230 GACGATCAACGG--GGACCGTCTTCAGCTGACGTCTAGATTTATAGGCAG   1277
                     ||.|||||.|||  |.|...||.|||  ||.|.||..|.||.||.|||||
BL02199___ydb   1230 GAAGATCAGCGGCAGCAAAATCATCA--TGTCATCGCGCTTCATCGGCAG   1277

BSNT_00789___   1278 AACAACCGC---CATTGTACTGAAAAAACGAATGCAGGTCTGC-AAGTTC   1323
                     |||||||||   ||||..||   ..|..||.||||||||.|.| ||| ||
BL02199___ydb   1278 AACAACCGCTGTCATTCAAC---GCAGGCGCATGCAGGTTTTCGAAG-TC   1323

BSNT_00789___   1324 AGCCAATCCTATTTCCA--AAAGAAAGGCCGCTTGTATACCATTTCTACT   1371
                     ||||..||.||||||||  ..||||| .|.|||||| |.|.|||..|||.
BL02199___ydb   1324 AGCCGCTCGTATTTCCAGCGCAGAAA-ACAGCTTGT-TTCGATTCATACA   1371

BSNT_00789___   1372 TCAGTGAAATCATCGAGCCAT------ATGGAAGAA-TTAACGGTGAGGG   1414
                     |||...|||||.||      |      |||| |||| ||..|||||...|
BL02199___ydb   1372 TCAACAAAATCGTC------TGTTTTAATGG-AGAAGTTTTCGGTGGCTG   1414

BSNT_00789___   1415 ATGTAGGTGAAGAG---GATGCAGCC---TTCATTTTAAACTGGTACTCA   1458
                     ||||   |||.|||   |||.|.|.|   .|||||..|   |||||.|||
BL02199___ydb   1415 ATGT---TGAGGAGAAAGATTCGGACGATATCATTGCA---TGGTATTCA   1458

BSNT_00789___   1459 TATGAAAA---AGCGGACGGTTAA   1479
                     ||||||||   ||.|.||||||||
BL02199___ydb   1459 TATGAAAAAAGAGTGAACGGTTAA   1482


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