Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00794 and BL02201
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:25
# Commandline: needle
# -asequence dna-align/BSNT_00794___alr.1.5803.seq
# -bsequence dna-align/BL02201___alr.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00794___alr-BL02201___alr.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00794___alr-BL02201___alr.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00794___alr
# 2: BL02201___alr
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1252
# Identity: 816/1252 (65.2%)
# Similarity: 816/1252 (65.2%)
# Gaps: 164/1252 (13.1%)
# Score: 2463.5
#
#
#=======================================
BSNT_00794___ 1 ATGAGCACAAAACCTTTTTACAGAGATACGTGGGCGGAAATTGACTTGTC 50
||||||..||||||.||.||.|||.|.||.|||||.|||||.||.||..|
BL02201___alr 1 ATGAGCTTAAAACCATTCTATAGAAAGACATGGGCCGAAATCGATTTAAC 50
BSNT_00794___ 51 CGCGATAAAGGAAAATGTCAGCAATATGAAAAAACATATCGGTGAACATG 100
.||..||||.|||||.|||.||||||||||....||.|||||.||.||||
BL02201___alr 51 GGCTTTAAAAGAAAACGTCCGCAATATGAAGCGGCACATCGGCGAGCATG 100
BSNT_00794___ 101 TCCACCTGATGGCAGTTGTGAAAGCAAACGCCTACGGGCATGGTGATGCA 150
|||.|||||||||.||.||.|||||.||.||||||||.||.||.||||||
BL02201___alr 101 TCCGCCTGATGGCCGTCGTTAAAGCGAATGCCTACGGACACGGGGATGCA 150
BSNT_00794___ 151 GAAACAGCAAAGGCTGCTCTTGACGCAGGTGC-TTCATGCTTGGCGGTGG 199
.|...|||.|||||.|||||||..|.|||.|| |.|||.||| ||.||||
BL02201___alr 151 CAGGTAGCGAAGGCGGCTCTTGCAGAAGGGGCGTCCATTCTT-GCTGTGG 199
BSNT_00794___ 200 CCATTTTGGATGAAGCGATTTCACT----GCGTAAAAAGGGATTGAAGGC 245
|..|.||||||||||||.||||.|| ||| .|.||||||||| |.
BL02201___alr 200 CTTTATTGGATGAAGCGCTTTCGCTGAGGGCG---CAGGGGATTGAA-GA 245
BSNT_00794___ 246 GCCTATATTGGTGCTCGGCGCGGTTCCCCCGGAGTATGTGGCA---ATCG 292
.||.||..|.||.|||||.||.||.||..|.||.||| ||| ||.|
BL02201___alr 246 ACCGATTCTTGTCCTCGGTGCAGTGCCGACCGAATAT---GCAAGCATTG 292
BSNT_00794___ 293 CTGCTGA-----GTATGA-CGTGACCTTAACGGGTTATTCTGTTGAATGG 336
|.||.|| |.||.| |||| ||.||.||.||.||.|..|||
BL02201___alr 293 CCGCGGAAAAGCGCATTATCGTG------ACTGGCTACTCCGTCGGCTGG 336
BSNT_00794___ 337 CTTCAGGAGGCTGCCC---------------GCCACACGAAAAAAGGTTA 371
||..|.||.| |||.| ||| .|||.|..
BL02201___alr 337 CTGAAAGACG-TGCTCGGTTTTCTGAATGAGGCC--------GAAGCTCC 377
BSNT_00794___ 372 TCTTCATTTTCATCTGAAGGTCGATACGGGGATGAACAGGCTTGG-TGTA 420
||||.|.|.||||.|||||.||||.|||||.|||..|.|.||||| || .
BL02201___alr 378 TCTTGAATATCATTTGAAGATCGACACGGGCATGGGCCGCCTTGGCTG-C 426
BSNT_00794___ 421 AAAACAGAGGAAGAAGTTC--AGAACGTGATGGCCATTCTTGACCGCAAC 468
|||||.||.|||| ||.|| |||| .||||||..| ||||||.|.|
BL02201___alr 427 AAAACGGAAGAAG-AGATCAAAGAA-ATGATGGAGA----TGACCGAATC 470
BSNT_00794___ 469 CCTCGTT----TAAAGTGCAAAGGGGTATTTACCCATTTTGCGACAGCGG 514
...||.| |.||.||.|..||.||.||.||.|||||.||.||.||||
BL02201___alr 471 GAACGATAAGCTCAATTGTACGGGCGTGTTCACTCATTTCGCCACGGCGG 520
BSNT_00794___ 515 ATGAAAAAGAAAGAGGCTATTTCTTAATGCAGTTTGAGCGCTTTAAAGAG 564
|.|||||.||.|..|..||||||...||||||.||||.||||||||||||
BL02201___alr 521 ACGAAAAGGACACCGATTATTTCAACATGCAGCTTGACCGCTTTAAAGAG 570
BSNT_00794___ 565 CTGAT-TGC-----TCCGCT--GCCGTTAAAGAATCTGATGGTCCACTGC 606
||||| .|| .||||| .||||| |||||||.|| |.|
BL02201___alr 571 CTGATCAGCCCCCTCCCGCTTGACCGTT--------TGATGGTGCA-TTC 611
BSNT_00794___ 607 G-CGAACAGCGCCGCCGGACTCCGGCT-----GAAAAAAGGCTTTTTTAA 650
| |.|||||||||||.||.||.| ||| |||.| || |.|||||
BL02201___alr 612 GTCAAACAGCGCCGCGGGTCTGC-GCTTCAGGGAACA---GC-TATTTAA 656
BSNT_00794___ 651 TGCAGTCAGATTCGGCATCGGCATGTATGGCCTTCGC-CCGTCTGCTGAC 699
|||.|||.|.|||||||||||||||||.|| .||.|| |||||..|.||.
BL02201___alr 657 TGCCGTCCGCTTCGGCATCGGCATGTACGG-TTTGGCGCCGTCAACCGAA 705
BSNT_00794___ 700 ATTTCGGACGAGATACCGTTTCAGCTGCGTCCGGCA---TTTACCCTGCA 746
||....||||||.|.|||||||..||||| ||.| |||.|.||.||
BL02201___alr 706 ATAAAAGACGAGCTGCCGTTTCGTCTGCG---GGAAGTGTTTTCGCTTCA 752
BSNT_00794___ 747 TTCGACG--CTGTCGCATGTCAAACTGATCAGAAAAGGCGAGAGCGTCAG 794
|.| || ||..|.|||||.|||...||.|.||||||||||||||||||
BL02201___alr 753 TAC--CGAACTCACCCATGTGAAAAAAATTAAAAAAGGCGAGAGCGTCAG 800
BSNT_00794___ 795 CTACGGAGCCGA-GTACACAGCAGAAAAAGACACATGGATCGGGACGGTG 843
|||||| |.||| .||.|||||..|....|||..||||||||||||.||.
BL02201___alr 801 CTACGG-GGCGACATATACAGCTCAGCGCGACGAATGGATCGGGACAGTC 849
BSNT_00794___ 844 CCTGTAGGCTATGCGGACGGCTGGCT-----------CCGAAAATTGAAA 882
||.||.||.|||||.|||||.||||| ||| |||.
BL02201___alr 850 CCCGTCGGGTATGCCGACGGATGGCTGAGGCGCCTGGCCG------GAAC 893
BSNT_00794___ 883 GGGACTGACATCCTTGTGAAGGGAAAACGCTTGAAAATTGCCGGCCGAAT 932
||.|.|| ||..|..|.|||||||||...|||||.||.||..||||
BL02201___alr 894 GGAAGTG-----CTGATCGACGGAAAACGCCAAAAAATAGCAGGGAGAAT 938
BSNT_00794___ 933 TTGCATGGACCAATTTATGGTGGAGCTGGATCAGGAATATCC-GCCGGGC 981
.|||||||||||.||.|||.|....||.|...|.|||||.|| |.| |||
BL02201___alr 939 CTGCATGGACCAGTTCATGATTTCCCTTGCCGAAGAATACCCTGTC-GGC 987
BSNT_00794___ 982 ACAAAAGTCACATTAATTGGCCGGCAGGGGGATGAATATATTTCCATGGA 1031
|||||.||.||.||.||.||...|||....||.||||..||.||..|.||
BL02201___alr 988 ACAAAGGTTACCTTGATCGGAAAGCAAAAAGACGAATGGATCTCAGTCGA 1037
BSNT_00794___ 1032 TGAGA-----------TTGCAGGAAGGCTCGAAACCATTAACTATGAGGT 1070
.||.| |||||| ||.||.||.|||||..|
BL02201___alr 1038 CGAAATCGCCCAAAATTTGCAG-----------ACGATCAATTATGAAAT 1076
BSNT_00794___ 1071 GGCCTGTACAATAAGTTCCCGTGTTCCCCGTATGTTTTTGGAAAATGGGA 1120
..||||||..||||||||..|.||.|||||||||||||||||||||||||
BL02201___alr 1077 TACCTGTATGATAAGTTCAAGGGTGCCCCGTATGTTTTTGGAAAATGGGA 1126
BSNT_00794___ 1121 GTATAATGGAAGTAAGAAATCCTTTATTGCAGGTAAATACAAGCAAT--T 1168
|||||||||||.||||.|||||..|.||||..| |.|||| |
BL02201___alr 1127 GTATAATGGAAATAAGGAATCCGATCTTGCCTG--------ATCAATCCT 1168
BSNT_00794___ 1169 AA 1170
.|
BL02201___alr 1169 GA 1170
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