Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03405 and BL02219

See Amino acid alignment / Visit BSNT_03405 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:21
# Commandline: needle
#    -asequence dna-align/BSNT_03405___cmk.1.5803.seq
#    -bsequence dna-align/BL02219___cmk.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03405___cmk-BL02219___cmk.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03405___cmk-BL02219___cmk.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03405___cmk
# 2: BL02219___cmk
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 721
# Identity:     493/721 (68.4%)
# Similarity:   493/721 (68.4%)
# Gaps:          86/721 (11.9%)
# Score: 1658.0
# 
#
#=======================================

BSNT_03405___      1 ATGGAAAAGAAATTATCGATTGCAATTGACGGCCCGGCAGCTGCGGGGAA     50
                     ||||||||||||||||..||||||||.||||||||.||.||.||.||.||
BL02219___cmk      1 ATGGAAAAGAAATTATGCATTGCAATAGACGGCCCTGCGGCAGCCGGAAA     50

BSNT_03405___     51 AAGCACCGTTGCCAAAATTGTGGCTGAGAAAAAA-TCGTACATATATATT     99
                     |||||||||.||.|||||.||||| .|||||||| |||||.||.||||||
BL02219___cmk     51 AAGCACCGTGGCGAAAATCGTGGC-CAGAAAAAAGTCGTATATTTATATT     99

BSNT_03405___    100 GATACAGGAGCAATGTATCGGGCGATTACGTACGCGGCTTTA---CAGGA    146
                     |||||.||.||.|||||..|||||||||||||      |.||   |.|||
BL02219___cmk    100 GATACGGGTGCCATGTACAGGGCGATTACGTA------TCTAGCGCTGGA    143

BSNT_03405___    147 AAA---CGTTGATCTGACAGATGAAGAAAAACTG-GCTGA--GC--TGCT    188
                     |||   |||||||.|.|..||.||||     |.| |||||  ||  ||.|
BL02219___cmk    144 AAAGGGCGTTGATTTAAACGACGAAG-----CGGCGCTGACGGCCTTGTT    188

BSNT_03405___    189 AAAGCGGACAGA------CATTGAGCTAA---TTACAACAAAAGATGGAC    229
                     |||      |||      |||.||.||.|   ||.|..|..|||..|..|
BL02219___cmk    189 AAA------AGAATCTGCCATCGATCTCACGGTTTCGCCTGAAGGAGAGC    232

BSNT_03405___    230 AAAAAGTGCTTGTA----AACGGCACAGATGTAACTGAGGCGATCAGAAC    275
                     |.||.||  ||.||    |  |||..|||||||||.|||||||||.|.||
BL02219___cmk    233 AGAAGGT--TTATATCGCA--GGCGAAGATGTAACAGAGGCGATCCGCAC    278

BSNT_03405___    276 AGATGAAGTCAGCAACCAAGTTTCAATTGCGGCCAAGCACAGAAGTG-TC    324
                     .|||...||.|||||||||||.||.||.|..|||||..|| |..|.| ||
BL02219___cmk    279 GGATAGCGTGAGCAACCAAGTCTCCATCGTCGCCAAATAC-GCCGGGATC    327

BSNT_03405___    325 AGAGAAGAAATGGTGAAACGCCAGCAGCAGCTTGGGGAAAAAGGCGGCGT    374
                     .|.|||||||||..||||.|.|||||||||||.|..|||||||||||.||
BL02219___cmk    328 CGCGAAGAAATGACGAAAAGGCAGCAGCAGCTGGCTGAAAAAGGCGGAGT    377

BSNT_03405___    375 CGTCATGGATGGTCGTGACATCGGGACGCATGTGCTGCCAAATGCAGAAG    424
                     |||||||||.||.||.||||||||.||.||.||.||.||.|||||.||||
BL02219___cmk    378 CGTCATGGACGGCCGCGACATCGGAACCCACGTTCTCCCGAATGCGGAAG    427

BSNT_03405___    425 TAAAAATCTTTCTTTTGGCATCTGTTGAAGAGAGAGCGAAACGCCGTTAT    474
                     |.|||||.|||||.|||||.||.||.||.|||.|.||.||||||||.|.|
BL02219___cmk    428 TGAAAATATTTCTCTTGGCGTCCGTCGAGGAGCGGGCAAAACGCCGCTTT    477

BSNT_03405___    475 GAAGAAAATGTGAAAAAAGGCTTTGATGTCAACTACGAAACATTAATTGA    524
                     ||||||||.||.||||||||.|...||||.||.||.|||||         
BL02219___cmk    478 GAAGAAAACGTCAAAAAAGGGTACAATGTAAATTATGAAAC---------    518

BSNT_03405___    525 GGAAATTGCAAGAAGA-------------GACAAGCTTGATTCAGAGCGC    561
                        ..|||| ||||||             |||||.||.||||||||||||
BL02219___cmk    519 ---GCTTGC-AGAAGAAATCAGGCGCCGTGACAAACTCGATTCAGAGCGC    564

BSNT_03405___    562 GAAGTATCTCCGCTGCGTAAAGCAGAAGACGCTCTTGAAATCGACACGAC    611
                     ||..|.||.|||.||...|||||.||.||.||.|||||||||||||||||
BL02219___cmk    565 GAGATTTCCCCGTTGAAAAAAGCGGACGATGCGCTTGAAATCGACACGAC    614

BSNT_03405___    612 ATCGCTTTCCATTCAAGAGGTAGCTGATAAAATCCTCGAGGCTGTGGAGC    661
                     .||..|..|.||..|.||.||.||.||.|||||.||..||..|||.||..
BL02219___cmk    615 TTCATTGACGATCGATGAAGTGGCCGAAAAAATTCTGCAGATTGTAGACA    664

BSNT_03405___    662 AAAAGTCCCGCTGA-------    675
                     |||||    |||.|       
BL02219___cmk    665 AAAAG----GCTCAAAAATAA    681


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