Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_03427 and BL02233

See Amino acid alignment / Visit BSNT_03427 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:23
# Commandline: needle
#    -asequence dna-align/BSNT_03427___ypbB.1.5803.seq
#    -bsequence dna-align/BL02233.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03427___ypbB-BL02233.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03427___ypbB-BL02233.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03427___ypbB
# 2: BL02233
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1199
# Identity:     685/1199 (57.1%)
# Similarity:   685/1199 (57.1%)
# Gaps:         280/1199 (23.4%)
# Score: 1640.0
# 
#
#=======================================

BSNT_03427___      1 -------TTGTCATTAAATTACTTCGATATTATGGTTCTCGATTGCCTTT     43
                            |  |||||   ||  ||.||          |.||||||...||
BL02233            1 ATGCCGGT--TCATT---TT--TTTGA----------CGCGATTGTGCTT     33

BSNT_03427___     44 GCAAA-----------ATAAACGGGGAACGGTCGGGAAGCGCTGTTTTTC     82
                     | |.|           ||.||.||.||.||.||...||||||.||.|.||
BL02233           34 G-ACATTCTGTCATCCATGAAGGGTGAGCGTTCTCCAAGCGCGGTCTATC     82

BSNT_03427___     83 ACCTATTCAAAGGCAAGAGATCGTCACAAACCATTCAAGATGCCGGCTTA    132
                     |..||||.|||||.||.||.||||||||.||.||.||.||.|||||.|||
BL02233           83 ATTTATTAAAAGGAAAAAGGTCGTCACAGACGATACAGGACGCCGGTTTA    132

BSNT_03427___    133 TTTCAGAC--TGCAAAATACTTTGGAATGGCGGC---------GCAATGT    171
                     |||  |.|  |.||||||||||        ||||         ||..|| 
BL02233          133 TTT--GCCGTTTCAAAATACTT--------CGGCTTTTGTTCGGCTCTG-    171

BSNT_03427___    172 TCGAGA-AGCGATGTTTCTG--AGTCGCTTGACAA-GCTTGAA-AAGCAT    216
                     |||||| ||| |.||..|.|  || ||.|   ||| |.||||| .||.| 
BL02233          172 TCGAGAGAGC-AGGTGGCAGCCAG-CGTT---CAACGATTGAAGCAGGA-    215

BSNT_03427___    217 TCATATCTCTCGCCA-ATGTCTGAAA---CAGATA------CATACAAAG    256
                         .|||.|.|.|| |     ||||   |.||.|      |.||||..|
BL02233          216 ----GTCTTTGGTCAGA-----GAAAAAGCGGAAAGCGGCGCTTACACCG    256

BSNT_03427___    257 TGACAGCCAGCGGCGCAGCAG------------TTTTAAGGCATGCCC-T    293
                     |.||.|..|..||.|.|||.|            ||||      ||||| |
BL02233          257 TCACCGAAAAAGGAGAAGCGGAACTTGCCGGCTTTTT------TGCCCTT    300

BSNT_03427___    294 TAGCGAGCGGCCTTGGCCCGTTCATTGTCACGGC-GCTCATTATCAGCAG    342
                     ||       .||.||||||...||||.||||||| ||| ||||||||..|
BL02233          301 TA-------TCCGTGGCCCCGCCATTTTCACGGCGGCT-ATTATCAGGCG    342

BSNT_03427___    343 GCTGCCGGTGTGCTTTGGAAAAGGCTTTCGCTGCTTG-TGCAGGTCCTAT    391
                     ||.|||...|||.|.|||..||||.|.||||| .||| |.||.||.||.|
BL02233          343 GCAGCCAAAGTGATGTGGGCAAGGATGTCGCT-TTTGATCCAAGTGCTCT    391

BSNT_03427___    392 CCCATAA-----ACAGCAAGGGAGCAGGC-AGTATATCCCTGTCACAAAG    435
                     ||.|.||     ||.||      |.|.|| .||||.|.||..||..|||.
BL02233          392 CCAACAAGCTTTACCGC------GAACGCGTGTATTTGCCGATCGTAAAA    435

BSNT_03427___    436 GATCATAAGACACTTC---ACTGGG-----------TAAAGAAATACCTG    471
                     |||.||.|||   |||   ||||||           |.||||||      
BL02233          436 GATTATCAGA---TTCAGAACTGGGTTAAACAGTATTTAAGAAA------    476

BSNT_03427___    472 TCCCGGCATACGGATCATATAGAGATGGCAAAAAGCC--TTTTTGCCATG    519
                       ||||.||.|.|.|.|.|.||.|          |||  .|||..|||  
BL02233          477 --CCGGAATGCTGCTGAAACAGCG----------GCCCAGTTTCACCA--    512

BSNT_03427___    520 CTTGAG-GCGCATTTGAAAAAGA----------TTGAAAACA-----AAG    553
                         || ||     |||||.|||          ||.|||.||     || 
BL02233          513 ----AGAGC-----TGAAAGAGAAGCTGTCTGTTTTAAATCATGATGAA-    552

BSNT_03427___    554 CAG--CGCAAATTTTTGTCTACTCCTTAACCTCGCACCATCGGATC----    597
                     |||  ||| .||||||||..|||||.|.||.||       |.||.|    
BL02233          553 CAGGCCGC-TATTTTTGTTCACTCCCTGACATC-------CAGAACAAAA    594

BSNT_03427___    598 ---GGTTATACTAGCAGGCAGCTTGCTGATACGCTGAAA-GAA----GAC    639
                        ||.|||||...|||.||||||.|.||.|     ||| |||    ||.
BL02233          595 GCGGGCTATACATTCAGACAGCTTTCCGAAA-----AAATGAACCTTGAT    639

BSNT_03427___    640 GAATGGTATGTC-TATAT-CA-TGTTTTGGG--CTTCGGTACATTATTTT    684
                     ||.|||||   | ||||| || |||||||||  .|||  |.||..|||||
BL02233          640 GAGTGGTA---CATATATGCACTGTTTTGGGATGTTC--TGCACCATTTT    684

BSNT_03427___    685 ATTCATTCTCTTCCGGAGT-GTGAAGAT--GCTTTGTTAAAGGATCTCCT    731
                     |||||.|| |..||..|.| |||||..|  |||||.|.|||.|  |||.|
BL02233          685 ATTCAATC-CGCCCAAAATGGTGAAAGTCCGCTTTTTCAAACG--CTCAT    731

BSNT_03427___    732 TTCTGATGTGCACTTAG-ATAATGCCCTGACAGAGTCGACGAGGAAAACA    780
                     |..|||..|.| |||.| ||.|||..||||||.|.||||||||.||||| 
BL02233          732 TCATGACATTC-CTTTGAATGATGGTCTGACACAATCGACGAGAAAAAC-    779

BSNT_03427___    781 TGGCAGATGGTC---------AAACAAGGGTTTCCGATACATCGAATTGC    821
                             |.||         |||.||||||.|.|.|||.|.||.||.||
BL02233          780 --------GCTCTTTCTTATAAAAGAAGGGTATACAATAGACCGGATCGC    821

BSNT_03427___    822 TGAAATCAGAAAGCTGAAAACAGCGACGATTGAAGACCACATTGTCGAGA    871
                     ..||||.||||||||||||...||||||||.||.||.||||||||.||.|
BL02233          822 AAAAATTAGAAAGCTGAAATTGGCGACGATCGAGGATCACATTGTGGAAA    871

BSNT_03427___    872 TTTCTCTCCATGAGCCTGCGTTTATGATTAATGATTATGTATCAGCAGAA    921
                     |..|..|.|||||.||..|.|||...||..||.|.||.||.||...|||.
BL02233          872 TCGCCATTCATGATCCGTCTTTTTCCATCGATCAGTACGTGTCGAAAGAG    921

BSNT_03427___    922 GACCAGCTCCAA----ATCGCAGAGTTTGCCAAACGGATGCGGACGAATA    967
                     ||.|||    ||    ||.||.||.|.|||.|.|..||..|..||.||||
BL02233          922 GAACAG----AAAATTATTGCCGATTATGCGATAGCGAACCAAACCAATA    967

BSNT_03427___    968 AAATCAAACAAATTCGCGACGGGCTGGAACAGCGG----TTCAGCTACTT   1013
                     ||||||.|||||||...||.||.||    |.||||    |.|||.||.||
BL02233          968 AAATCAGACAAATTAAAGAGGGACT----CGGCGGCCGATACAGTTATTT   1013

BSNT_03427___   1014 TCAAATCAGACTGGCATTGAC-AAAGCAGGTG--CAGCAATATGACTAA   1059
                     |.|||||.|.|||||..||.| |||.| ||||  |||.|  |||..|||
BL02233         1014 TAAAATCCGCCTGGCCCTGTCGAAAAC-GGTGATCAGGA--ATGGATAA   1059


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.