Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02571 and BL02287

See Amino acid alignment / Visit BSNT_02571 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:13
# Commandline: needle
#    -asequence dna-align/BSNT_02571___ylnE.1.5803.seq
#    -bsequence dna-align/BL02287___sirB.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02571___ylnE-BL02287___sirB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02571___ylnE-BL02287___sirB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02571___ylnE
# 2: BL02287___sirB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 828
# Identity:     556/828 (67.1%)
# Similarity:   556/828 (67.1%)
# Gaps:          84/828 (10.1%)
# Score: 1777.0
# 
#
#=======================================

BSNT_02571___      1 ATGAAACAAGCAATTTTATATGTCGGCCACGGCAGCCGGGTCAAAAAAGC     50
                     |||||||||||.|||||||||.|||||||.||.|||||..|.||||.|||
BL02287___sir      1 ATGAAACAAGCGATTTTATATATCGGCCATGGAAGCCGTCTGAAAAGAGC     50

BSNT_02571___     51 GCAGCAAGAAGCCGCAGCCTTTTTGGAAGGATGCAAGGCTCACATCTCTG    100
                     .||...||||||.||.||.||||||||..|.|||||.|...||||.||.|
BL02287___sir     51 CCAAACAGAAGCAGCCGCTTTTTTGGAGAGCTGCAAAGAAAACATGTCCG    100

BSNT_02571___    101 TGCCAGTACAAGAAATCAGCTTTTTAGAGCTTCAGGAG---CCGACAATT    147
                     ..||..|.||.||||| |.||||||.|...||  ||.|   |||...||.
BL02287___sir    101 CCCCCATTCAGGAAAT-ATCTTTTTTGGAATT--GGCGGCACCGGATATC    147

BSNT_02571___    148 GAGACAGGATTTGAAGCATGTGTGAAGCAAGGCGCCACTCATATCGCAGT    197
                     ||.||.||.|||.||||.||||||.|..|.||.||.||.||||||||.|.
BL02287___sir    148 GAAACCGGCTTTAAAGCGTGTGTGGAAAAGGGGGCGACGCATATCGCGGC    197

BSNT_02571___    198 GGTGCCTCTGCTTCTTTTAACAGCTGCGCATGCAAAACATGATATTCCGG    247
                     .|||||.||.||.||.||.|||||.||.|||||.|||...||.||.||.|
BL02287___sir    198 CGTGCCGCTTCTCCTCTTGACAGCCGCACATGCCAAAAGGGACATCCCTG    247

BSNT_02571___    248 AAGAAATTGCCCGTGCTGCATCTCGATATCCGTCAGTCCGCATTTCATAC    297
                     ||||..|||||||||||.|.||.|..||.||.||.|||.||.|..|.|||
BL02287___sir    248 AAGAGCTTGCCCGTGCTTCCTCACAGTACCCTTCCGTCAGCGTCGCTTAC    297

BSNT_02571___    298 GGAAAGCCGATCGGGATTGACGAAGAAGTAGTCAAGGCTGTATATCAC--    345
                     ||||||||||||||..|.||..|.|||||.|||||.||.|| |.|.||  
BL02287___sir    298 GGAAAGCCGATCGGCGTCGATCAGGAAGTCGTCAAAGCGGT-TTTTACAA    346

BSNT_02571___    346 ----CGAATGAAA----GACATAGGTGTTCCATATGAAAATGCCAGAGTG    387
                         |||| ||||    |||        .|||||||||.||||.|||||.
BL02287___sir    347 GGATCGAA-GAAACGGGGAC--------GCCATATGAACATGCAAGAGTC    387

BSNT_02571___    388 GTACTCATCGGAAGGGGAAGTTCAGATCCTGATGTCAAAAGAGACGTAAC    437
                     ||..|.||||||||||||||.||.|||||.|||||||||.|.||.||...
BL02287___sir    388 GTGTTGATCGGAAGGGGAAGCTCTGATCCGGATGTCAAACGGGATGTTTA    437

BSNT_02571___    438 TGGTA-TTGCTAATCTTCTTCAG-GAAATGATTCCAGTCAAGGAAGTCAT    485
                     ||.|| ||||.|| |..| |.|| ||..|.|..|||||..|.||.|||||
BL02287___sir    438 TGATATTTGCGAA-CGGC-TGAGAGACCTCACACCAGTGGATGAGGTCAT    485

BSNT_02571___    486 TCCGTGCTTTTTGACAGCATGCGGCCCTAATTACAAAGAGGTTTTTTCAG    535
                     |||.||||||.|||||||.||.|..||..|.|||...||.||.|||..|.
BL02287___sir    486 TCCCTGCTTTATGACAGCCTGTGAGCCGCACTACCTGGATGTGTTTAAAC    535

BSNT_02571___    536 AACTTAAAAAAGATGACGGCATAACAACCTTTATCGTTCCATATTTGCTC    585
                     |.||||||.||...|||||.|.|||.||.||.||||||||.|||.||||.
BL02287___sir    536 AGCTTAAAGAACGGGACGGAAAAACGACATTCATCGTTCCGTATCTGCTG    585

BSNT_02571___    586 TTTACGGGTATGCTGATGAATGAAATCGAACGAGAGGTTCAGAAA-TTAA    634
                     ||.||.||||||||||||||.||.||.|||    |||    |||| ...|
BL02287___sir    586 TTCACCGGTATGCTGATGAACGAGATTGAA----AGG----GAAACCGCA    627

BSNT_02571___    635 AAGCTCA-------TAATCCGAACGTC------------TACCTCTCTTC    665
                     |||||.|       .||||||||.|||            ||||       
BL02287___sir    628 AAGCTGAAAGAAACGAATCCGAATGTCGTGCTGACGGATTACC-------    670

BSNT_02571___    666 CTATATCGGTTTTCATCCTCATGTGAAAAACGCATTTTTGAACCGTGTGA    715
                          ||||.||.||.||.|||||.||||||||.||||||.||||.|| |
BL02287___sir    671 -----TCGGCTTCCACCCCCATGTAAAAAACGCCTTTTTGCACCGCGT-A    714

BSNT_02571___    716 GAGAAACTGCGG-------CAAATTCTGAGGGACAATTTGATTTTGATGG    758
                     |||.||  ||||       ||||    |..||.|..|||||||||...||
BL02287___sir    715 GAGGAA--GCGGTTATCAACAAA----GCCGGCCGCTTTGATTTTACAGG    758

BSNT_02571___    759 AGATTCATATGCTTCCGCTGCACATTAG    786
                     ||..|||.|||||.|||||||||||||.
BL02287___sir    759 AGCATCAGATGCTGCCGCTGCACATTAA    786


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02571 and BL02287

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
