Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_02572 and BL02289

See Amino acid alignment / Visit BSNT_02572 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:13
# Commandline: needle
#    -asequence dna-align/BSNT_02572___ylnF.1.5803.seq
#    -bsequence dna-align/BL02289___sirA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02572___ylnF-BL02289___sirA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02572___ylnF-BL02289___sirA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02572___ylnF
# 2: BL02289___sirA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 557
# Identity:     319/557 (57.3%)
# Similarity:   319/557 (57.3%)
# Gaps:         130/557 (23.3%)
# Score: 813.0
# 
#
#=======================================

BSNT_02572___      1 ATGCTTCCGCTGCACATTAGCCTGGAAAAGAAGAAG--GTTGTGATTGCG     48
                     |||||.|||||||||||||.|.||  ||||...|||  |..||.||||||
BL02289___sir      1 ATGCTGCCGCTGCACATTAACATG--AAAGGCAAAGCCGCAGTCATTGCG     48

BSNT_02572___     49 GG-GGGCGGCAGCAT-----CGCTCTCAGAAGGCTGAAATCGGTGATTTC     92
                     || |||.||.|| ||     |||     |..||||||||.|||||.|..|
BL02289___sir     49 GGCGGGGGGAAG-ATTGCGGCGC-----GGCGGCTGAAAACGGTGCTGGC     92

BSNT_02572___     93 TGAGGGAGCTGATATAACGC-----TCGTCAGTCCGGATGTTGAACCGGA    137
                     .||.||.||    || .|||     ||.||||.||               
BL02289___sir     93 AGAAGGTGC----AT-CCGCGACCGTCATCAGCCC---------------    122

BSNT_02572___    138 AATCAAGCAAATGGCAGAAGAG-----------------CGA----CGTA    166
                       |.|||||    .||||||||                 |||    .|.|
BL02289___sir    123 --TGAAGCA----TCAGAAGAGATGCTCGGATTGATTAACGAACACGGCA    166

BSNT_02572___    167 TCAAATGGGAAAAACGGACAATTGAAAAA----GAA---GATTATCTC--    207
                     ||.|||||.|.||          ||||||    |||   |.|.||.||  
BL02289___sir    167 TCGAATGGAAGAA----------GAAAAAGGCGGAACCCGGTGATTTCAA    206

BSNT_02572___    208 -AATGC-TTTCT--TCATTATTGCTGCGACGGAT---AATGCGGCAGTGA    250
                      ||||| |||||  |||||.|   ||||||.|||   .|||.||||   |
BL02289___sir    207 GAATGCATTTCTGATCATTCT---TGCGACCGATGACCATGAGGCA---A    250

BSNT_02572___    251 ACAAAGAAATTGCCCAATCCGCTTCGCCTTTTCAGCTTGTCAATTGTGTC    300
                     ||||.....|.|||..|||.||..|.|||...|||||.||||||..||..
BL02289___sir    251 ACAAGCGTCTCGCCGCATCGGCAGCTCCTGAGCAGCTCGTCAATGTTGCG    300

BSNT_02572___    301 AGTGACGCTGAGCTTGGCAATGTATATATGCCGAAAATTGTCAAAAGAGG    350
                     |||||.||.|||||.||.|||||||||.|.||.|||||..||||.|||||
BL02289___sir    301 AGTGAAGCGGAGCTGGGAAATGTATATGTTCCAAAAATAATCAACAGAGG    350

BSNT_02572___    351 GCATGTCACTGTGTCTGTTTCTACAAGCGGAGCCAGTCCAAAGCACACGA    400
                     ..|..|.||..|.||.||.||.||||.|||||||||.||....|||||||
BL02289___sir    351 AAACATAACCATATCCGTCTCAACAAACGGAGCCAGCCCGCGCCACACGA    400

BSNT_02572___    401 -AAGAGCTTGCTGAAAACGTGGATAAGCTGATTGACGGCGATTTTATTGC    449
                      .|| |||.||.|.|.|..|.|||.|..||||.||.|..||       ||
BL02289___sir    401 TCAG-GCTGGCCGGACAGATCGATGATTTGATCGATGATGA-------GC    442

BSNT_02572___    450 T----GAAGTGA---ACAGGCTTTATCAGGTGAGAAGGAAGA------AA    486
                     |    .|||.||   ||..|||||..|    ||.||.|||||      ||
BL02289___sir    443 TCGTCCAAGAGATCGACGAGCTTTTCC----GAAAAAGAAGAGGCCTGAA    488

BSNT_02572___    487 ----TAA    489
                         |.|
BL02289___sir    489 CCCTTGA    495


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.