Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02584 and BL02296
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:14
# Commandline: needle
# -asequence dna-align/BSNT_02584___priA.1.5803.seq
# -bsequence dna-align/BL02296___priA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02584___priA-BL02296___priA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02584___priA-BL02296___priA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02584___priA
# 2: BL02296___priA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2506
# Identity: 1805/2506 (72.0%)
# Similarity: 1805/2506 (72.0%)
# Gaps: 176/2506 ( 7.0%)
# Score: 6362.0
#
#
#=======================================
BSNT_02584___ 1 ATGAATTTTGCCGAAGTCATCGTTGATGTGAGCACCAAAAATATAGACAG 50
|||||.||.||.|||||.|||||.|||||.|..||.||||||||.|||||
BL02296___pri 1 ATGAACTTCGCTGAAGTGATCGTCGATGTTACAACGAAAAATATCGACAG 50
BSNT_02584___ 51 GCCTTTTGATTATAAAATCCCAGACCATCTCAAGGGCATGATCAAAACGG 100
.||.||||||||....|||||.|||.|..||||.||.|||||.||||..|
BL02296___pri 51 ACCGTTTGATTACCGCATCCCCGACAAATTCAAAGGTATGATTAAAAAAG 100
BSNT_02584___ 101 GGATGCGGGTCATTGTTCCGTTTGGCCCCCGTAAGATTCAAGGATTTGTG 150
|||||||.||.||.||||||||.|||.||||.||.||.||.||||||||.
BL02296___pri 101 GGATGCGCGTGATCGTTCCGTTCGGCGCCCGCAAAATCCAGGGATTTGTC 150
BSNT_02584___ 151 A-CAGCAGTCAAAGAAGCATCTGACCTATCGGGAAAATCTGTCAAGGAAG 199
| |||| ||.||||||.|.||.||.||..|.||....||.||.|||||..
BL02296___pri 151 ACCAGC-GTGAAAGAATCGTCGGAGCTTGCCGGCCGTTCGGTTAAGGATA 199
BSNT_02584___ 200 TAGAGGGTTTATTAGATCTTACACCTGTTCTGACAGAGGAGCTTATGGAT 249
|.||||.|.|..|.|||||..|.||.|||.||||.||||||||..|.||.
BL02296___pri 200 TCGAGGATATCCTTGATCTGGCGCCCGTTTTGACGGAGGAGCTGCTTGAG 249
BSNT_02584___ 250 CTGTCATCATGGCTGTCAGACAAAACGCTGTCTTTTAAAATAACGGCGCT 299
||||||...||||||.||||.|||||.||.|||||||||||.|||||..|
BL02296___pri 250 CTGTCAGACTGGCTGACAGAAAAAACACTTTCTTTTAAAATTACGGCTTT 299
BSNT_02584___ 300 TCAAGCAATGCTGCCTGCCGCCTTAAAGGCGAAATATGAAAAAGAATTAA 349
.||.||.|||||.||.||.||..|.||.||.|||||.|..||||||.|.|
BL02296___pri 300 GCAGGCGATGCTCCCCGCGGCTATGAAAGCAAAATACGGCAAAGAAATCA 349
BSNT_02584___ 350 A---AATTGCACACGGCG-----CCGATCTTCCGCCGCAAGTGGAACGGC 391
| .|| ||||| ||| ||||| .||||.||
BL02296___pri 350 AGGTGAT------CGGCGATAAACCG--CTTCC---------CGAACCGC 382
BSNT_02584___ 392 ---------TGTTTACTGAAACAAAGACGCTGTTGTATTCGGATATACCC 432
||||..|..|||.|.|||||||.|..|||||.||||||...
BL02296___pri 383 TAAAAACCTTGTTCTCGCAAAAAGAGACGCTTTCTTATTCCGATATAAAT 432
BSNT_02584___ 433 GATCATGATACGCTGAAACTGATTCAAAGGCATGTTCAAAAAGGGGACAT 482
||.||.|..||..|.||.||||||||..|.||.||||||.||||..|..|
BL02296___pri 433 GACCACGGAACATTAAAGCTGATTCAGCGCCAGGTTCAAGAAGGCAATCT 482
BSNT_02584___ 483 TGACGTGACGTATAAAGTCGCGCAAAAAACCAATAAAAAAATGGTCAG-- 530
|||.|||.||||||||||...|||.|||||.||.|||||||||...||
BL02296___pri 483 TGAAGTGGCGTATAAAGTAAAGCAGAAAACAAACAAAAAAATGCGGAGAA 532
BSNT_02584___ 531 -----------------------GCATATTCAGGCAAATGCGAGTAAAGA 557
|.|.|||.| |||||
BL02296___pri 533 TGATCGCCCCCCTTTGCGCGAAAGAACATTTA-------------AAAGA 569
BSNT_02584___ 558 AGAGCTTGCTAAGCAGGCTGAGGGATTGTC-CCGCCAAGCAGCAAAACAG 606
||.|||||| .||..|.|| ||| |||||.|..|||||.
BL02296___pri 570 AGCGCTTGC------------CGGCCTCTCTCCG-CAAGCTGTCAAACAA 606
BSNT_02584___ 607 CAGGCGATTCTTCACTTTCTCATCTCTGAGCCGGAAGGTG--------TG 648
.|.|||||.|||||.|||.||||| || |||.||.|.| ||
BL02296___pri 607 AAAGCGATCCTTCAGTTTTTCATC---GA-CCGCAAAGAGGGCGGCGCTG 652
BSNT_02584___ 649 AAAATTCCTGCTGCGGAATTGTGCAAAAAAACGGACACGAGCTCT---GC 695
||||.||...|||..||..|.|.||||||| .|.||||| ||
BL02296___pri 653 ----TTCCGGCAAAGGATCTGATCGACAAAACGG---GGGGCTCTTCCGC 695
BSNT_02584___ 696 AACCATCAAAACCCTTATCCAAAAAGGGCTTTTGAAGGAAAGCTATGAAG 745
..||.|.|||.|.||.|||.|.||.|||||.||.|||||||||.|.||.|
BL02296___pri 696 GTCCTTGAAAGCGCTCATCGACAAGGGGCTGTTAAAGGAAAGCGAAGAGG 745
BSNT_02584___ 746 AGGTTTACAGAGATCCCTATCAGGACAAAATGTTCAAAAAAACAGAGCCC 795
||||||||||.|||||.||||||||||.|||||||||||||||.||.||.
BL02296___pri 746 AGGTTTACAGGGATCCTTATCAGGACAGAATGTTCAAAAAAACCGAACCG 795
BSNT_02584___ 796 CTGCCGCTGACAGACGAACAGAGGGC-TGCCTTCGAGCCCATACGCGAGA 844
||.||||||||.||.||.||| |.|| .||||.||||.|.||| ||| ||
BL02296___pri 796 CTTCCGCTGACTGAAGAGCAG-GCGCAGGCCTACGAGGCGATA-GCG-GA 842
BSNT_02584___ 845 CATTGGACAGCGATGA------GCATAAAGTGTTCCTCCTTCACGGCGTG 888
||.| |.|||.|| |||..|.|||||.||.||||||||.|||
BL02296___pri 843 ---TGCA-ATCGAAGAAAAGCGGCACGATGTGTTTCTTCTTCACGGAGTG 888
BSNT_02584___ 889 ACAGGAAGCGGAAAAACCGAAATTTATCTGCAATCAATTGAAAAAGTACT 938
||.||||||||||||||.|||.|.|||||||||||.||.|||||.||.||
BL02296___pri 889 ACCGGAAGCGGAAAAACGGAAGTCTATCTGCAATCGATCGAAAAGGTGCT 938
BSNT_02584___ 939 GGCGAAA---GGAAAAGAAGCCATCGTCCTCGTACCGGAAATATCGCTGA 985
|| || ||.||||||||.|||||.|||||.||||||||.||.||||
BL02296___pri 939 GG---AAGCCGGCAAAGAAGCGATCGTTCTCGTTCCGGAAATTTCCCTGA 985
BSNT_02584___ 986 CGCCGCAAATGGTCAACCGCTTCAAGGGCCGCTTCGGCTCCCAGGTGGCA 1035
|||||||.||||||||||||||.||.||.|||||.|||||.|||||.||.
BL02296___pri 986 CGCCGCAGATGGTCAACCGCTTTAAAGGGCGCTTTGGCTCGCAGGTAGCC 1035
BSNT_02584___ 1036 GTCATGCACAGCGGTTTATCCACAGGAGAAAAATATGACGAGTGGCGTAA 1085
||..||||||||||..|.||.|||||||||||||||||.||.|||||.||
BL02296___pri 1036 GTACTGCACAGCGGGCTTTCAACAGGAGAAAAATATGATGAATGGCGGAA 1085
BSNT_02584___ 1086 AATCCACCGGAAGGAAGTACGGCTTGTCGTCGGTGCCAGATCCGCGATTT 1135
|||||||||.||.|||||.||||||||||||||.||..|.||.|||||||
BL02296___pri 1086 AATCCACCGCAAAGAAGTCCGGCTTGTCGTCGGGGCGCGCTCGGCGATTT 1135
BSNT_02584___ 1136 TTGCTCCGTTTGAAAATCTAGGAATGATAATCATCGATGAAGAGCACGAG 1185
|.||.||||||||||||||.||.|||||.||.||.||||||||||||||.
BL02296___pri 1136 TCGCGCCGTTTGAAAATCTCGGCATGATTATAATTGATGAAGAGCACGAA 1185
BSNT_02584___ 1186 TCTTCCTATAAACAGGAAGAAATGCCGCGCTATCATGCGAAAGAGGTGGC 1235
.|.||.||.||.|||||.||.||||||.|.||.|||||||||||.|.|||
BL02296___pri 1186 ACATCGTACAAGCAGGAGGAGATGCCGAGATACCATGCGAAAGAAGCGGC 1235
BSNT_02584___ 1236 -AATCAAGCGGGCCGAGCATCACAGCTGCCCGGTTGTATTAGGGAGTGCT 1284
|.|||| .|||||.|..|.|||.|.||.|||||.||..|.||.|||||.
BL02296___pri 1236 GATTCAA-AGGGCCAAATACCACCGGTGTCCGGTCGTGCTCGGCAGTGCG 1284
BSNT_02584___ 1285 ACGCCGACATTAGAGTCATATGCAAGAGCGCAAAAGGGCGTATACGAGCT 1334
||||||||..|.||.||.|..||.||.|||.||||.|||||.|||.||||
BL02296___pri 1285 ACGCCGACGCTCGAATCGTTCGCGAGGGCGAAAAAAGGCGTGTACAAGCT 1334
BSNT_02584___ 1335 TCTTTCACTGAAGCACCGTGTTAACCATCGGGTGATGCCTGAGGTTTCGC 1384
||||||.||.||||||||.||.||.||.|..||.|||||.||.||.||.|
BL02296___pri 1335 TCTTTCTCTCAAGCACCGCGTCAATCACCAAGTCATGCCCGACGTGTCTC 1384
BSNT_02584___ 1385 TTGTCGATATGAGAGAGGAGCTTAGAAACGGCAATCGCTCGATGTTTTCA 1434
|.|||||||||||||||||.||..|.|.|||.||.||||||||||||||.
BL02296___pri 1385 TCGTCGATATGAGAGAGGAACTGCGCAGCGGAAACCGCTCGATGTTTTCC 1434
BSNT_02584___ 1435 GTTGAATTGATGGAAAAGCTTGAAGAAACGATTGCCAAGGGTGAGCAGGC 1484
...||.||.||||....||||||.|||||..|||..||.||.||||||||
BL02296___pri 1435 AAAGACTTAATGGCCGGGCTTGAGGAAACTCTTGAAAAAGGAGAGCAGGC 1484
BSNT_02584___ 1485 GGTGCTGTTTTTAAATAAGAGGGGCTATTCTTCCTTTGTGATGTGCAGGG 1534
.||.|||||||||||.||.||.||||||||.||.|||||.||||||||||
BL02296___pri 1485 CGTTCTGTTTTTAAACAAAAGAGGCTATTCCTCATTTGTCATGTGCAGGG 1534
BSNT_02584___ 1535 ATTGCGGCTATGTCCCGCAATGCCCGCACTGCGACATTTCCATGACGTAT 1584
|.|||||.||||||...||.||.||.||.||.||.|||||..|||||||.
BL02296___pri 1535 ACTGCGGATATGTCATCCAGTGTCCTCATTGTGAAATTTCATTGACGTAC 1584
BSNT_02584___ 1585 CATCGTTACGGCCAAAGGCTGAAATGCCATTATTGCGGACATGAAGA--- 1631
||..|.||.||.||..|.|||||.||||||||.|||||..||||| |
BL02296___pri 1585 CACAGGTATGGACAGCGTCTGAAGTGCCATTACTGCGGCTATGAA-ACCG 1633
BSNT_02584___ 1632 GCCTGTTCCG-CACACTTGTCCTGAATGCGCAAGCGAGCATATCCGCTTT 1680
||.|| ||| || |..||.||.|||||||.|||||||||||||||||..
BL02296___pri 1634 GCATG--CCGTCA-AGCTGCCCCGAATGCGGAAGCGAGCATATCCGCTAC 1680
BSNT_02584___ 1681 TTCGGAACGGGAACACAGCGAGTGGAGGAAGAGCTGACAAAAGTGCTGCC 1730
||.||.||.||.||||||||.||.||.|||||..||||.||.||.|||||
BL02296___pri 1681 TTTGGTACAGGCACACAGCGGGTCGAAGAAGAATTGACGAAGGTTCTGCC 1730
BSNT_02584___ 1731 AAGTGCGAGAGTGATTCGGATGGATGTTGACACGACATCACGGAAAGGCG 1780
...|||.||.|||||.||.||||||||.||.||.||.|||.|.||.||.|
BL02296___pri 1731 GGCTGCAAGGGTGATCCGCATGGATGTCGATACAACCTCAAGAAAGGGAG 1780
BSNT_02584___ 1781 CCCATGAAAAATTACTGTCA-GCTTTCGGAGAAGGAAAAGCGGATATTCT 1829
|.||||||||..|.||..|| .||||.|.|| |||..||||.|||||.||
BL02296___pri 1781 CGCATGAAAAGCTGCTCACATCCTTTGGCAG-AGGCGAAGCCGATATCCT 1829
BSNT_02584___ 1830 TCTCGGAACGCAAATGATCGCGAAAGGGCTTGATTTTCCG--AATGTCAC 1877
.||.||||||||.||||||||.||||||||.||||| || ||.|||||
BL02296___pri 1830 GCTTGGAACGCAGATGATCGCCAAAGGGCTCGATTT--CGAAAACGTCAC 1877
BSNT_02584___ 1878 GCTTGTCGGAGTGTTAAGTGCTGATACAACACTTCATATTCCTGATTTCA 1927
|||.|||||.||.||.||.||.|||||.|..|||||.||.||.|||||||
BL02296___pri 1878 GCTCGTCGGTGTCTTGAGCGCGGATACGATGCTTCACATCCCCGATTTCA 1927
BSNT_02584___ 1928 GATCGGCTGAAAAAACATTTCAGCTGTTAACGCAAGTCAGCGGCCGGGCA 1977
||.|.|||||||||||.||.||||||.|.|||||.||.|||||..|.||.
BL02296___pri 1928 GAGCCGCTGAAAAAACGTTCCAGCTGATGACGCAGGTGAGCGGAAGAGCG 1977
BSNT_02584___ 1978 GGCAGGCATGAAAAGCCCGGCCATGTCATCATTCAAACGTATACACCGTC 2027
||..|.||.||||||||.|||.|.||.||||||||.|||||.||||||||
BL02296___pri 1978 GGGCGCCACGAAAAGCCGGGCAAGGTGATCATTCAGACGTACACACCGTC 2027
BSNT_02584___ 2028 TCATTACAGTATCCAGCTGACGAAAACACACGATTATGAAACGTTCTATC 2077
.||||||||.||.|||||.||.|||||.||.|||||||||||.||||..|
BL02296___pri 2028 CCATTACAGCATTCAGCTCACAAAAACGCATGATTATGAAACATTCTTCC 2077
BSNT_02584___ 2078 AGCATGAAATGGCGCACAGGAGAGAGCAATCCTATCCGCCATACTACTAT 2127
.|||.||.|||..||||||.||.||.||..|||||||.|||||.||.|||
BL02296___pri 2078 GGCAGGAGATGCTGCACAGAAGGGAACAGGCCTATCCTCCATATTATTAT 2127
BSNT_02584___ 2128 TTGGCTCTTGTGACTGTTTCTCATGAGGAAGTGGCGAAAGCAGC---GGT 2174
|||||.||.||.|..||.||.||.|||||||||.||||.||.|| .||
BL02296___pri 2128 TTGGCGCTGGTCAGCGTATCGCACGAGGAAGTGACGAAGGCGGCACTCGT 2177
BSNT_02584___ 2175 TACAGCTGAAAAAATCGCTCA---TTTTTTGAAAGCAAACTGCGGAGCTG 2221
.| ||||||||||||| || .|||...||||.|.|.|.| .||| |
BL02296___pri 2178 GA---CTGAAAAAATCGC-CACCTATTTAAAAAAGAACATTTC-AAGC-G 2221
BSNT_02584___ 2222 ACACGAAAATTCTCGGACCAAGCGCGTCGCCGATAGCCAGGATCAAAGAT 2271
|..||||.||||||||.||...|||.||.|||||.|||||||||||||||
BL02296___pri 2222 AGGCGAAGATTCTCGGCCCTGTCGCATCTCCGATCGCCAGGATCAAAGAT 2271
BSNT_02584___ 2272 AGATATCGCTATCAATGCGTGATAAAATACAAACAGGAAACCCAGTT--- 2318
||||||||||||||||||||||||||||||||||||||||.||||.|
BL02296___pri 2272 AGATATCGCTATCAATGCGTGATAAAATACAAACAGGAAAACCAGCTTAC 2321
BSNT_02584___ 2319 ATC--TGCTTTATTGAAGAAGATACTGGAACATTATAAACGCGAAATTGA 2366
||| ||||| ||.||.||..||||.|||||.|||||.||.|||||
BL02296___pri 2322 ATCGTTGCTT-----AAAAACATTATGGATCATTACAAACGAGACATTGA 2366
BSNT_02584___ 2367 ACAAAAACATGTAAT----GATTTCAATTGATATGAATCCTTATATGATG 2412
|||||| |.||| ||||||.||.||.||||||||.|||||||||
BL02296___pri 2367 ACAAAA----GCAATTGGCGATTTCGATCGACATGAATCCATATATGATG 2412
BSNT_02584___ 2413 ATGTAA 2418
||||||
BL02296___pri 2413 ATGTAA 2418
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